Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTN4_chr3_2093866_3062959	2340710	T T	TATATAGA others(11): Show TATATAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0106 a0001c0004t0001g0106	1	116	0.0086	18	c.-89 others(35): Show c.-89+1478_-89+1479insTATAGAGAGAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(11): Show TATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0038 a0001c0002t0001g0038	1	116	0.0086	18	c.-89 others(35): Show c.-89+1478_-89+1479insTATATAGAGAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340711	A A	AGAGAGAG others(11): Show AGAGAGAGAGAGAGGGAGG	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0003 a0003	a0003c0019 a0003c0019	a0003c0019t0002 a0003c0019t0002	a0003c0019t0002g0031 a0003c0019t0002g0031	1	116	0.0086	18	c.-89 others(35): Show c.-89+1491_-89+1492insGGAGGGAGAGAGAGAGAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400424	T T	TATATATA others(11): Show TATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0094 a0001c0003t0001g0094	1	116	0.0086	18	c.-89 others(37): Show c.-89+61194_-89+61195insTATATATATATATACATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2527409	A A	ATGCTGCT others(11): Show ATGCTGCTGCTGCTGCTGC	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0007 a0007	a0007c0018 a0007c0018	a0007c0018t0003 a0007c0018t0003	a0007c0018t0003g0062 a0007c0018t0003g0062	1	116	0.0086	18	c.-88 others(37): Show c.-88-43998_-88-43981dupCTGCTGCTGCTGCTGCTG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2607610	C C	CCACACAC others(11): Show CCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02717.hp2 HG02818.hp2 others(2): Show HG02647.hp1 HG02717.hp2 HG02818.hp2 HG03516.hp2 NA18906.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0013 a0005c0012 a0001c0001 a0001c0013 a0005c0012	a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 a0001c0013t0007 a0005c0012t0009	a0001c0001t0001g0059 a0001c0001t0004g0042 a0001c0001t0008g0043 others(2): Show a0001c0001t0001g0059 a0001c0001t0004g0042 a0001c0001t0008g0043 a0001c0013t0007g0056 a0005c0012t0009g0093	5	116	0.0431	18	c.55+ others(35): Show c.55+36068_55+36069insCACACACACACACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2834898	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTCTTT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02622.hp1 HG02622.hp2 others(3): Show HG02257.hp2 HG02622.hp1 HG02622.hp2 HG03041.hp1 HG03139.hp1 HG03453.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0006 a0002c0014 others(1): Show a0001c0001 a0001c0006 a0002c0014 a0003c0008	a0001c0001t0001 a0001c0001t0008 a0001c0006t0002 others(3): Show a0001c0001t0001 a0001c0001t0008 a0001c0006t0002 a0002c0014t0001 a0003c0008t0001 a0003c0008t0013	a0001c0001t0001g0033 a0001c0001t0008g0089 a0001c0006t0002g0060 others(3): Show a0001c0001t0001g0033 a0001c0001t0008g0089 a0001c0006t0002g0060 a0002c0014t0001g0016 a0003c0008t0001g0084 a0003c0008t0013g0109	6	116	0.0517	18	c.454 others(37): Show c.454+15331_454+15332insCTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2834898	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01261.hp2 HG02165.hp1 others(8): Show HG01175.hp1 HG01261.hp2 HG02165.hp1 HG02165.hp2 HG02897.hp1 HG02965.hp2 HG03041.hp2 HG03471.hp1 HG03516.hp1 HG03540.hp1 HG03831.hp2	a0001 a0004 a0001 a0004	a0001c0002 a0001c0003 a0001c0004 others(3): Show a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0010 a0004c0011	a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 others(6): Show a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0003t0011 a0001c0004t0001 a0001c0005t0001 a0001c0005t0010 a0001c0010t0003 a0004c0011t0003	a0001c0002t0002g0078 a0001c0002t0003g0024 a0001c0002t0005g0002 others(8): Show a0001c0002t0002g0078 a0001c0002t0003g0024 a0001c0002t0005g0002 a0001c0003t0011g0113 a0001c0004t0001g0020 a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0005t0010g0001 a0001c0005t0010g0085 a0001c0010t0003g0077 a0004c0011t0003g0111	11	116	0.0948	18	c.454 others(37): Show c.454+15324_454+15341dupTTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2864740	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG03453.hp2 HG02132.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0001 a0001c0006t0002 a0001c0001t0001 a0001c0006t0002	a0001c0001t0001g0012 a0001c0006t0002g0060 a0001c0001t0001g0012 a0001c0006t0002g0060	2	116	0.0172	18	c.455 others(35): Show c.455-1997_455-1996insAAAAAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2878553	C C	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0050 a0001c0001t0001g0050	1	116	0.0086	18	c.653 others(35): Show c.653-4572_653-4555dupGTGTGTGTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2961231	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG02738.hp1 HG01175.hp2 HG02738.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0006 a0001c0002t0001 a0001c0003t0006	a0001c0002t0001g0038 a0001c0003t0006g0040 a0001c0002t0001g0038 a0001c0003t0006g0040	2	116	0.0172	18	c.135 others(39): Show c.1359-27112_1359-27095dupAAAAAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2969515	G G	GGATTATT others(11): Show GGATTATTATTATTATTAT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0010 a0001c0005t0010	a0001c0005t0010g0001 a0001c0005t0010g0001	1	116	0.0086	18	c.135 others(39): Show c.1359-18829_1359-18812dupGATTATTATTATTATTAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2969516	G G	GATTATTA others(11): Show GATTATTATTATTATTATT	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02559.hp1 HG02622.hp2 others(2): Show HG02074.hp1 HG02559.hp1 HG02622.hp2 HG03139.hp2 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0005 a0001c0009 others(1): Show a0001c0002 a0001c0005 a0001c0009 a0003c0008	a0001c0002t0001 a0001c0002t0012 a0001c0005t0001 others(2): Show a0001c0002t0001 a0001c0002t0012 a0001c0005t0001 a0001c0009t0004 a0003c0008t0001	a0001c0002t0001g0088 a0001c0002t0012g0013 a0001c0005t0001g0104 others(2): Show a0001c0002t0001g0088 a0001c0002t0012g0013 a0001c0005t0001g0104 a0001c0009t0004g0005 a0003c0008t0001g0084	5	116	0.0431	18	c.135 others(39): Show c.1359-18822_1359-18805dupATTATTATTATTATTATT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99253897	T T	TTATATAT others(11): Show TTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19070.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0016 a0001c0001t0014g0016	1	66	0.0152	18	c.-20 others(39): Show c.-209-71439_-209-71422dupATATATATATATATATAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99338919	G G	GATATATA others(11): Show GATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0002 a0004c0004t0002	a0004c0004t0002g0041 a0004c0004t0002g0041	1	66	0.0152	18	c.-71 others(37): Show c.-71+13446_-71+13463dupATATATATATATATATAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99727312	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG02965.hp2 NA19070.hp2 HG01099.hp2 HG02965.hp2 NA19070.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0001c0001t0014 a0002c0002t0003 a0001c0001t0003 a0001c0001t0014 a0002c0002t0003	a0001c0001t0003g0022 a0001c0001t0014g0016 a0002c0002t0003g0037 a0001c0001t0003g0022 a0001c0001t0014g0016 a0002c0002t0003g0037	3	66	0.0455	18	c.56- others(35): Show c.56-92227_56-92210dupAAAAAAAAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99738616	C C	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01123.hp2 HG01496.hp2 others(3): Show HG00738.hp1 HG01123.hp2 HG01496.hp2 HG02257.hp2 HG02735.hp1 NA19070.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0006 a0001c0001t0012 a0001c0001t0015 others(3): Show a0001c0001t0006 a0001c0001t0012 a0001c0001t0015 a0002c0002t0001 a0002c0002t0003 a0003c0003t0002	a0001c0001t0006g0032 a0001c0001t0012g0018 a0001c0001t0015g0064 others(3): Show a0001c0001t0006g0032 a0001c0001t0012g0018 a0001c0001t0015g0064 a0002c0002t0001g0003 a0002c0002t0003g0036 a0003c0003t0002g0012	6	66	0.0909	18	c.56- others(35): Show c.56-80919_56-80902dupGTGTGTGTGTGTGTGTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99792573	G G	GTGTGTGT others(11): Show GTGTGTGTGTGTGTCTGTC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02723.hp2 HG01243.hp1 HG02723.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0004 a0001c0001t0004 a0002c0002t0004	a0001c0001t0004g0044 a0002c0002t0004g0039 a0001c0001t0004g0044 a0002c0002t0004g0039	2	66	0.0303	18	c.56- others(35): Show c.56-26968_56-26967insGTGTGTGTGTCTGTCTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99930796	A A	AACACACA others(11): Show AACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0009 a0009	a0009c0012 a0009c0012	a0009c0012t0008 a0009c0012t0008	a0009c0012t0008g0026 a0009c0012t0008g0026	1	66	0.0152	18	c.673 others(37): Show c.673+14653_673+14670dupCACACACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99981077	G G	GATATATA others(11): Show GATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01169.hp1 HG02004.hp1 HG00733.hp2 HG01169.hp1 HG02004.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0009 a0002c0002t0022 a0001c0001t0001 a0001c0001t0009 a0002c0002t0022	a0001c0001t0001g0054 a0001c0001t0009g0043 a0002c0002t0022g0013 a0001c0001t0001g0054 a0001c0001t0009g0043 a0002c0002t0022g0013	3	66	0.0455	18	c.878 others(37): Show c.878-20947_878-20930dupTATATATATATATATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100072990	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0023 a0001c0001t0010g0023	1	66	0.0152	18	c.143 others(37): Show c.1430-1150_1430-1133dupAAAAAAAAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	12/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100204297	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19000.hp2 NA19070.hp2 NA19000.hp2 NA19070.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0014 a0004c0004t0002 a0001c0001t0014 a0004c0004t0002	a0001c0001t0014g0016 a0004c0004t0002g0001 a0001c0001t0014g0016 a0004c0004t0002g0001	2	66	0.0303	18	c.188 others(39): Show c.1884+10664_1884+10681dupTATATATATATATATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	15/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100342152	G G	GACACACA others(11): Show GACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02965.hp1 HG02258.hp1 HG02965.hp1	a0006 a0010 a0006 a0010	a0006c0006 a0010c0010 a0006c0006 a0010c0010	a0006c0006t0011 a0010c0010t0011 a0006c0006t0011 a0010c0010t0011	a0006c0006t0011g0033 a0010c0010t0011g0009 a0006c0006t0011g0033 a0010c0010t0011g0009	2	66	0.0303	18	c.303 others(35): Show c.3030+961_3030+978dupCACACACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	23/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1098785	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	232	0.0043	18	c.-83 others(35): Show c.-83+5666_-83+5667insTATATATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1098787	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01175.hp2 HG02602.hp1 HG01099.hp2 HG01175.hp2 HG02602.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0002t0002g0020 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0002t0002g0020	3	232	0.0129	18	c.-83 others(35): Show c.-83+5668_-83+5669insTATATATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1098789	C C	CACATATA others(11): Show CACATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19065.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0035 a0001c0001t0001g0035	1	232	0.0043	18	c.-83 others(35): Show c.-83+5670_-83+5671insCATATATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1098789	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0093 a0001c0001t0001g0093	1	232	0.0043	18	c.-83 others(35): Show c.-83+5681_-83+5698dupTATATATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1119322	C C	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00733.hp1 others(41): Show HG00140.hp1 HG00140.hp2 HG00733.hp1 HG00735.hp1 HG01070.hp2 HG01074.hp2 HG01169.hp1 HG01175.hp1 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG02074.hp2 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02698.hp2 HG02976.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp2 HG03453.hp1 HG03471.hp2 HG03669.hp2 HG04115.hp1 HG06807.hp1 NA18612.hp2 NA18906.hp1 NA18948.hp2 NA18969.hp1 NA18972.hp1 NA18979.hp1 NA19000.hp2 NA19043.hp1 NA19043.hp2 NA19065.hp1 NA19065.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0001c0003 others(10): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0013 a0002c0011 a0002c0014 a0002c0017 a0005c0026	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(13): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0002t0009 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0001 a0001c0013t0001 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0005c0026t0001	a0001c0001t0001g0024 a0001c0001t0001g0035 a0001c0001t0001g0086 others(41): Show a0001c0001t0001g0024 a0001c0001t0001g0035 a0001c0001t0001g0086 a0001c0001t0001g0129 a0001c0001t0001g0141 a0001c0001t0001g0156 a0001c0002t0001g0116 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0125 a0001c0002t0001g0160 a0001c0002t0001g0227 a0001c0002t0003g0079 a0001c0002t0009g0205 a0001c0003t0001g0042 a0001c0003t0001g0064 a0001c0003t0001g0081 a0001c0003t0001g0092 a0001c0003t0001g0165 a0001c0004t0001g0034 a0001c0004t0001g0060 a0001c0004t0001g0061 a0001c0004t0001g0090 a0001c0004t0001g0158 a0001c0004t0002g0038 a0001c0005t0001g0182 a0001c0005t0001g0189 a0001c0005t0001g0215 a0001c0006t0001g0195 a0001c0006t0001g0216 a0001c0007t0001g0014 a0001c0007t0001g0015 a0001c0007t0001g0017 a0001c0007t0001g0100 a0001c0007t0001g0133 a0001c0008t0001g0075 a0001c0008t0001g0211 a0001c0008t0001g0212 a0001c0013t0001g0199 a0002c0011t0001g0006 a0002c0011t0001g0217 a0002c0014t0001g0232 a0002c0017t0001g0179 a0005c0026t0001g0091	44	232	0.1897	18	c.-83 others(37): Show c.-83+26216_-83+26233dupTGTGTGTGTGTGTGTGTG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1160344	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00609.hp1 HG00735.hp2 others(13): Show HG00423.hp1 HG00609.hp1 HG00735.hp2 HG01074.hp1 HG01256.hp1 HG01361.hp2 HG02040.hp1 HG02040.hp2 HG02074.hp2 HG02109.hp2 HG02451.hp2 HG02630.hp2 HG02738.hp1 NA18961.hp2 NA19000.hp2 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0007 a0002c0011	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 a0001c0006t0001 a0001c0007t0001 a0002c0011t0001	a0001c0001t0001g0067 a0001c0001t0001g0097 a0001c0001t0001g0141 others(13): Show a0001c0001t0001g0067 a0001c0001t0001g0097 a0001c0001t0001g0141 a0001c0001t0001g0171 a0001c0001t0002g0124 a0001c0002t0001g0209 a0001c0003t0001g0011 a0001c0003t0001g0026 a0001c0003t0001g0092 a0001c0003t0001g0142 a0001c0003t0001g0224 a0001c0003t0001g0225 a0001c0004t0001g0065 a0001c0006t0001g0216 a0001c0007t0001g0052 a0002c0011t0001g0217	16	232	0.0690	18	c.55+ others(35): Show c.55+12288_55+12305dupTATATATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245217	T T	TATAACAT others(11): Show TATAACATATATATATAAC	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0164 a0001c0005t0001g0164	1	232	0.0043	18	c.358 others(37): Show c.358+17227_358+17228insACATATATATATAACATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1280459	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03710.hp1 homoSapiens_chm13v2.hp1 HG03710.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0002 a0001c0007 a0001c0002 a0001c0007	a0001c0002t0001 a0001c0007t0001 a0001c0002t0001 a0001c0007t0001	a0001c0002t0001g0122 a0001c0007t0001g0102 a0001c0002t0001g0122 a0001c0007t0001g0102	2	232	0.0086	18	c.454 others(35): Show c.454+1957_454+1974dupTTTTTTTTTTTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	5/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1348157	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp2 HG02055.hp1 others(2): Show HG00642.hp1 HG00642.hp2 HG02055.hp1 HG02258.hp1 HG03516.hp1	a0001 a0003 a0001 a0003	a0001c0004 a0001c0005 a0003c0015 a0001c0004 a0001c0005 a0003c0015	a0001c0004t0002 a0001c0005t0001 a0001c0005t0002 others(1): Show a0001c0004t0002 a0001c0005t0001 a0001c0005t0002 a0003c0015t0001	a0001c0004t0002g0039 a0001c0005t0001g0164 a0001c0005t0002g0019 others(2): Show a0001c0004t0002g0039 a0001c0005t0001g0164 a0001c0005t0002g0019 a0003c0015t0001g0007 a0003c0015t0001g0008	5	232	0.0216	18	c.136 others(37): Show c.1365-4165_1365-4148dupAAAAAAAAAAAAAAAAAA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1406642	G G	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp2 HG00733.hp1 HG01099.hp2 others(2): Show HG00423.hp2 HG00733.hp1 HG01099.hp2 HG01256.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0019 a0001c0001 a0001c0004 a0001c0019	a0001c0001t0001 a0001c0001t0002 a0001c0004t0002 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0004t0002 a0001c0019t0001	a0001c0001t0001g0046 a0001c0001t0001g0152 a0001c0001t0002g0124 others(2): Show a0001c0001t0001g0046 a0001c0001t0001g0152 a0001c0001t0002g0124 a0001c0004t0002g0038 a0001c0019t0001g0202	5	232	0.0216	18	c.32 others(29): Show c.3224_*3225insGTGTGTGTGTGTGTGTGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding		2426		chr3	TogoVar
CNTNAP2_chr7_146111801_148425998	146422359	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0018 a0001c0001t0007g0018	1	40	0.0250	18	c.97+ others(37): Show c.97+305399_97+305400insATATATATATATATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146426185	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	40	0.0250	18	c.97+ others(37): Show c.97+309220_97+309237dupAAAAAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146622131	A A	ATATATAT others(11): Show ATATATATATACACACACG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG02486.hp1 others(11): Show HG00735.hp2 HG01891.hp1 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02717.hp1 HG02717.hp2 HG02897.hp1 HG03139.hp2 HG03225.hp2 HG03239.hp1 NA18522.hp1 NA19030.hp1 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0011 a0001c0012 a0001c0013 a0001c0018 a0001c0019 a0002c0017 a0003c0007 a0004c0014	a0001c0001t0001 a0001c0001t0007 a0001c0001t0018 others(11): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0003t0011 a0001c0005t0008 a0001c0011t0016 a0001c0012t0004 a0001c0013t0003 a0001c0018t0002 a0001c0019t0006 a0002c0017t0015 a0003c0007t0017 a0004c0014t0021	a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0018g0001 others(11): Show a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0018g0001 a0001c0002t0001g0008 a0001c0003t0011g0023 a0001c0005t0008g0005 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0017t0015g0037 a0003c0007t0017g0031 a0004c0014t0021g0022	14	40	0.3500	18	c.98- others(37): Show c.98-152130_98-152129insCACACACGTATATATATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146639465	T T	TATTCCCA others(11): Show TATTCCCATTTTGTGGGGG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG02486.hp1 others(11): Show HG00735.hp2 HG01891.hp1 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02717.hp1 HG02717.hp2 HG02897.hp1 HG03139.hp2 HG03225.hp2 HG03239.hp1 NA18522.hp1 NA19030.hp1 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0011 a0001c0012 a0001c0013 a0001c0018 a0001c0019 a0002c0017 a0003c0007 a0004c0014	a0001c0001t0001 a0001c0001t0007 a0001c0001t0018 others(11): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0003t0011 a0001c0005t0008 a0001c0011t0016 a0001c0012t0004 a0001c0013t0003 a0001c0018t0002 a0001c0019t0006 a0002c0017t0015 a0003c0007t0017 a0004c0014t0021	a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0018g0001 others(11): Show a0001c0001t0001g0038 a0001c0001t0007g0020 a0001c0001t0018g0001 a0001c0002t0001g0008 a0001c0003t0011g0023 a0001c0005t0008g0005 a0001c0011t0016g0019 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0017t0015g0037 a0003c0007t0017g0031 a0004c0014t0021g0022	14	40	0.3500	18	c.98- others(37): Show c.98-134795_98-134794insGTGGGGGATTCCCATTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146665783	T T	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02486.hp2 NA19030.hp2 HG02486.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0016 a0001c0003 a0002c0016	a0001c0003t0011 a0002c0016t0004 a0001c0003t0011 a0002c0016t0004	a0001c0003t0011g0023 a0002c0016t0004g0024 a0001c0003t0011g0023 a0002c0016t0004g0024	2	40	0.0500	18	c.98- others(37): Show c.98-108473_98-108472insAAAAAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146671429	T T	TCACACAC others(11): Show TCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0002 a0002	a0002c0017 a0002c0017	a0002c0017t0015 a0002c0017t0015	a0002c0017t0015g0037 a0002c0017t0015g0037	1	40	0.0250	18	c.98- others(37): Show c.98-102836_98-102819dupACACACACACACACACAC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146760409	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0002 a0002	a0002c0016 a0002c0016	a0002c0016t0004 a0002c0016t0004	a0002c0016t0004g0024 a0002c0016t0004g0024	1	40	0.0250	18	c.98- others(35): Show c.98-13846_98-13829dupTTTTTTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146964893	T T	TGGCCAGA others(11): Show TGGCCAGATTTGGTCTGGG	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02451.hp1 HG02896.hp2 others(5): Show HG00735.hp1 HG02451.hp1 HG02896.hp2 HG02897.hp2 HG02976.hp2 HG03239.hp2 NA19030.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0010	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0003t0020 a0001c0004t0003 a0001c0006t0014 a0001c0010t0002	a0001c0001t0001g0038 a0001c0002t0001g0007 a0001c0002t0002g0040 others(5): Show a0001c0001t0001g0038 a0001c0002t0001g0007 a0001c0002t0002g0040 a0001c0003t0020g0017 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0006t0014g0033 a0001c0010t0002g0014	8	40	0.2000	18	c.403 others(37): Show c.403-79007_403-79006insTTTGGTCTGGGGGCCAGA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147317796	G G	GTGTGTAT others(11): Show GTGTGTATATGTGTATATA	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	1	40	0.0250	18	c.149 others(39): Show c.1498+17509_1498+17510insGTATATGTGTATATATGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147317804	G G	GTGTATAT others(11): Show GTGTATATATGTGTATGTA	intron_variant intron_variant	MODIFIER	HG02886.hp1 NA20129.hp2 HG02886.hp1 NA20129.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0013 a0001c0003t0023 a0001c0003t0013 a0001c0003t0023	a0001c0003t0013g0010 a0001c0003t0023g0030 a0001c0003t0013g0010 a0001c0003t0023g0030	2	40	0.0500	18	c.149 others(39): Show c.1498+17515_1498+17516insGTATATATGTGTATGTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147421585	C C	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03139.hp1 HG03540.hp2 HG01891.hp2 HG03139.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0008 a0001c0001 a0001c0003 a0001c0008	a0001c0001t0006 a0001c0003t0004 a0001c0008t0001 a0001c0001t0006 a0001c0003t0004 a0001c0008t0001	a0001c0001t0006g0009 a0001c0003t0004g0029 a0001c0008t0001g0025 a0001c0001t0006g0009 a0001c0003t0004g0029 a0001c0008t0001g0025	3	40	0.0750	18	c.167 others(39): Show c.1670+25817_1670+25834dupGTGTGTGTGTGTGTGTGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	10/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147448484	G G	GTATATAT others(11): Show GTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0009 a0001c0001t0006g0009	1	40	0.0250	18	c.167 others(39): Show c.1671-37447_1671-37430dupATATATATATATATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	10/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147486889	C C	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02630.hp1 HG03225.hp2 others(1): Show HG01891.hp1 HG02630.hp1 HG03225.hp2 NA20129.hp1	a0001 a0004 a0001 a0004	a0001c0006 a0001c0012 a0001c0018 others(1): Show a0001c0006 a0001c0012 a0001c0018 a0004c0014	a0001c0006t0009 a0001c0012t0004 a0001c0018t0002 others(1): Show a0001c0006t0009 a0001c0012t0004 a0001c0018t0002 a0004c0014t0021	a0001c0006t0009g0028 a0001c0012t0004g0026 a0001c0018t0002g0012 others(1): Show a0001c0006t0009g0028 a0001c0012t0004g0026 a0001c0018t0002g0012 a0004c0014t0021g0022	4	40	0.1000	18	c.177 others(35): Show c.1777+858_1777+875dupGTGTGTGTGTGTGTGTGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147510850	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG03239.hp1 NA19030.hp2 HG02897.hp1 HG03239.hp1 NA19030.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0002c0016 a0003c0007 a0001c0002 a0002c0016 a0003c0007	a0001c0002t0001 a0002c0016t0004 a0003c0007t0017 a0001c0002t0001 a0002c0016t0004 a0003c0007t0017	a0001c0002t0001g0008 a0002c0016t0004g0024 a0003c0007t0017g0031 a0001c0002t0001g0008 a0002c0016t0004g0024 a0003c0007t0017g0031	3	40	0.0750	18	c.177 others(39): Show c.1777+24813_1777+24830dupTATATATATATATATATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147635198	A A	ATATATAT others(11): Show ATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG02896.hp1 NA21309.hp2 HG02896.hp1 NA21309.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0020 a0001c0001 a0005c0020	a0001c0001t0018 a0005c0020t0005 a0001c0001t0018 a0005c0020t0005	a0001c0001t0018g0001 a0005c0020t0005g0016 a0001c0001t0018g0001 a0005c0020t0005g0016	2	40	0.0500	18	c.189 others(37): Show c.1898-3905_1898-3904insATATATATATATATGTAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	12/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147802794	G G	GGGGAGAG others(11): Show GGGGAGAGGGAGAGGGAGA	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0019 a0001c0009t0019	a0001c0009t0019g0027 a0001c0009t0019g0027	1	40	0.0250	18	c.209 others(41): Show c.2099-100751_2099-100734dupGGAGAGGGAGAGGGAGAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147839939	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0015 a0001c0015	a0001c0015t0001 a0001c0015t0001	a0001c0015t0001g0011 a0001c0015t0001g0011	1	40	0.0250	18	c.209 others(39): Show c.2099-63609_2099-63608insCACACACACACACACACA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar

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