Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
AFF1_chr4_86930011_87146039	86978177	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01192.hp1 HG01123.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0213 a0001c0001t0004g0228 a0001c0001t0004g0213 a0001c0001t0004g0228	2	294	0.0068	18	c.38+ others(35): Show c.38+29613_38+29630dupTTTTTTTTTTTTTTTTTT	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	2/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	86985181	C C	CTATATAT others(11): Show CTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0022 a0001c0004t0022	a0001c0004t0022g0243 a0001c0004t0022g0243	1	294	0.0034	18	c.38+ others(35): Show c.38+36627_38+36644dupTATATATATATATATATA	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	2/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	87022543	G G	GATATATA others(11): Show GATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01167.hp1	a0013 a0013	a0013c0020 a0013c0020	a0013c0020t0061 a0013c0020t0061	a0013c0020t0061g0171 a0013c0020t0061g0171	1	294	0.0034	18	c.39- others(35): Show c.39-23608_39-23607insCACATATATATATATATA	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	2/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	87022662	G G	GTGTGTGT others(11): Show GTGTGTGTATATATATAGC	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00558.hp1 others(106): Show HG00140.hp2 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00673.hp1 HG00741.hp2 HG01074.hp1 HG01109.hp1 HG01123.hp1 HG01192.hp1 HG01243.hp2 HG01256.hp1 HG01256.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01516.hp1 HG01517.hp1 HG01978.hp1 HG01993.hp1 HG02015.hp1 HG02040.hp1 HG02056.hp1 HG02056.hp2 HG02071.hp2 HG02083.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02280.hp1 HG02451.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02698.hp1 HG02738.hp1 HG02809.hp1 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02970.hp2 HG02976.hp1 HG03130.hp1 HG03195.hp1 HG03225.hp1 HG03239.hp1 HG03486.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03669.hp1 HG03942.hp1 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG06807.hp2 NA18612.hp2 NA18747.hp1 NA18940.hp1 NA18940.hp2 NA18944.hp2 NA18948.hp1 NA18951.hp2 NA18953.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18961.hp2 NA18964.hp2 NA18965.hp1 NA18968.hp2 NA18970.hp2 NA18971.hp1 NA18977.hp1 NA18977.hp2 NA18981.hp1 NA18985.hp1 NA18985.hp2 NA18988.hp2 NA18992.hp1 NA18994.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp2 NA19001.hp2 NA19009.hp2 NA19011.hp2 NA19043.hp1 NA19055.hp2 NA19056.hp1 NA19057.hp2 NA19060.hp1 NA19060.hp2 NA19066.hp1 NA19070.hp2 NA19081.hp2 NA19088.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 others(4): Show a0001 a0003 a0004 a0009 a0012 a0017 a0018	a0001c0001 a0001c0003 a0001c0004 others(10): Show a0001c0001 a0001c0003 a0001c0004 a0001c0007 a0001c0011 a0001c0014 a0001c0017 a0003c0012 a0004c0009 a0009c0024 a0012c0021 a0017c0026 a0018c0013	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(31): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0001t0012 a0001c0001t0029 a0001c0001t0030 a0001c0001t0031 a0001c0001t0035 a0001c0001t0047 a0001c0001t0048 a0001c0001t0051 a0001c0001t0064 a0001c0001t0065 a0001c0003t0001 a0001c0003t0007 a0001c0003t0020 a0001c0003t0027 a0001c0003t0062 a0001c0003t0066 a0001c0003t0067 a0001c0004t0023 a0001c0004t0046 a0001c0007t0008 a0001c0011t0008 a0001c0014t0005 a0001c0017t0005 a0003c0012t0004 a0004c0009t0004 a0009c0024t0001 a0012c0021t0030 a0017c0026t0036 a0018c0013t0070	a0001c0001t0001g0031 a0001c0001t0001g0046 a0001c0001t0001g0119 others(106): Show a0001c0001t0001g0031 a0001c0001t0001g0046 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0124 a0001c0001t0001g0133 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0158 a0001c0001t0001g0161 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0221 a0001c0001t0001g0292 a0001c0001t0002g0160 a0001c0001t0002g0201 a0001c0001t0002g0226 a0001c0001t0002g0246 a0001c0001t0002g0263 a0001c0001t0003g0027 a0001c0001t0003g0065 a0001c0001t0003g0069 a0001c0001t0003g0245 a0001c0001t0004g0028 a0001c0001t0004g0035 a0001c0001t0004g0063 a0001c0001t0004g0123 a0001c0001t0004g0155 a0001c0001t0004g0159 a0001c0001t0004g0202 a0001c0001t0004g0203 a0001c0001t0004g0204 a0001c0001t0004g0209 a0001c0001t0004g0212 a0001c0001t0004g0213 a0001c0001t0004g0215 a0001c0001t0004g0220 a0001c0001t0004g0222 a0001c0001t0004g0223 a0001c0001t0004g0224 a0001c0001t0004g0227 a0001c0001t0004g0228 a0001c0001t0004g0238 a0001c0001t0009g0208 a0001c0001t0009g0216 a0001c0001t0009g0217 a0001c0001t0009g0218 a0001c0001t0009g0219 a0001c0001t0009g0230 a0001c0001t0009g0232 a0001c0001t0009g0233 a0001c0001t0012g0056 a0001c0001t0029g0229 a0001c0001t0029g0236 a0001c0001t0030g0234 a0001c0001t0031g0129 a0001c0001t0031g0131 a0001c0001t0035g0264 a0001c0001t0047g0148 a0001c0001t0048g0134 a0001c0001t0051g0109 a0001c0001t0064g0244 a0001c0001t0065g0214 a0001c0003t0001g0179 a0001c0003t0001g0180 a0001c0003t0007g0206 a0001c0003t0007g0235 a0001c0003t0020g0178 a0001c0003t0020g0183 a0001c0003t0027g0186 a0001c0003t0027g0188 a0001c0003t0062g0182 a0001c0003t0066g0207 a0001c0003t0067g0187 a0001c0004t0023g0104 a0001c0004t0023g0250 a0001c0004t0046g0105 a0001c0007t0008g0210 a0001c0007t0008g0211 a0001c0007t0008g0237 a0001c0011t0008g0110 a0001c0014t0005g0181 a0001c0017t0005g0097 a0003c0012t0004g0121 a0003c0012t0004g0122 a0004c0009t0004g0057 a0004c0009t0004g0225 a0009c0024t0001g0150 a0012c0021t0030g0231 a0017c0026t0036g0260 a0018c0013t0070g0010	109	294	0.3708	18	c.39- others(35): Show c.39-23489_39-23488insAGCTGTGTGTATATATAT	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	2/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF1_chr4_86930011_87146039	87063228	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18953.hp2 NA18959.hp1 HG01978.hp1 NA18953.hp2 NA18959.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0048 a0001c0001t0001 a0001c0001t0048	a0001c0001t0001g0124 a0001c0001t0001g0133 a0001c0001t0048g0134 a0001c0001t0001g0124 a0001c0001t0001g0133 a0001c0001t0048g0134	3	294	0.0102	18	c.105 others(39): Show c.1059+15645_1059+15662dupTTTTTTTTTTTTTTTTTT	AFF1	ENSG00000172493.23	transcript	ENST00000395146.9	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
AFF2_chrX_148495617_149005663	148500637	T T	TGCCGCCG others(11): Show TGCCGCCGCCGCCGCCGCC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01243.hp1 HG03486.hp1 NA18974.hp1 others(4): Show HG01243.hp1 HG03486.hp1 NA18974.hp1 NA18988.hp1 NA19043.hp1 NA19083.hp1 NA19085.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0003c0008 others(1): Show a0001c0001 a0001c0002 a0003c0008 a0004c0006	a0001c0001t0012 a0001c0001t0043 a0001c0001t0044 others(4): Show a0001c0001t0012 a0001c0001t0043 a0001c0001t0044 a0001c0001t0046 a0001c0002t0047 a0003c0008t0045 a0004c0006t0012	a0001c0001t0012g0168 a0001c0001t0043g0006 a0001c0001t0044g0127 others(4): Show a0001c0001t0012g0168 a0001c0001t0043g0006 a0001c0001t0044g0127 a0001c0001t0046g0165 a0001c0002t0047g0108 a0003c0008t0045g0010 a0004c0006t0012g0011	7	169	0.0414	18	c.-43 others(27): Show c.-431_-414dupCGCCGCCGCCGCCGCCGC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/21	413	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581337	T T	TACGTGTA others(11): Show TACGTGTACACACACATAC	intron_variant intron_variant	MODIFIER	HG00673.hp1 NA19063.hp1 HG00673.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0086 a0001c0001t0005 a0001c0001t0086	a0001c0001t0005g0021 a0001c0001t0086g0031 a0001c0001t0005g0021 a0001c0001t0086g0031	2	169	0.0118	18	c.48- others(35): Show c.48-70658_48-70657insGTACACACACATACACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581337	T T	TACGTGTA others(11): Show TACGTGTACACACATATAC	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG01978.hp1 HG02015.hp1 others(7): Show HG01943.hp1 HG01978.hp1 HG02015.hp1 HG02071.hp1 HG02258.hp1 HG02630.hp2 NA18612.hp1 NA18747.hp1 NA18960.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0021 a0001c0001t0033 a0001c0001t0051 others(7): Show a0001c0001t0021 a0001c0001t0033 a0001c0001t0051 a0001c0001t0055 a0001c0001t0068 a0001c0001t0069 a0001c0001t0073 a0001c0001t0115 a0001c0002t0029 a0001c0007t0080	a0001c0001t0021g0103 a0001c0001t0033g0083 a0001c0001t0051g0069 others(7): Show a0001c0001t0021g0103 a0001c0001t0033g0083 a0001c0001t0051g0069 a0001c0001t0055g0025 a0001c0001t0068g0169 a0001c0001t0069g0047 a0001c0001t0073g0074 a0001c0001t0115g0080 a0001c0002t0029g0149 a0001c0007t0080g0162	10	169	0.0592	18	c.48- others(35): Show c.48-70658_48-70657insGTACACACATATACACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581421	T T	TACGTGTA others(11): Show TACGTGTACACACATATAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG06807.hp1 HG01884.hp2 HG06807.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0031 a0001c0003t0028 a0001c0002t0031 a0001c0003t0028	a0001c0002t0031g0148 a0001c0003t0028g0005 a0001c0002t0031g0148 a0001c0003t0028g0005	2	169	0.0118	18	c.48- others(35): Show c.48-70574_48-70573insGTACACACATATACACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581448	G G	GTCTACGT others(11): Show GTCTACGTGTACACACATA	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0012 a0001c0001t0042g0012	1	169	0.0059	18	c.48- others(35): Show c.48-70550_48-70549insCTACGTGTACACACATAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581451	T T	TACGTGTA others(11): Show TACGTGTACACACATATAC	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02129.hp1 HG02056.hp1 HG02129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0027 a0001c0001t0002 a0001c0001t0027	a0001c0001t0002g0054 a0001c0001t0027g0017 a0001c0001t0002g0054 a0001c0001t0027g0017	2	169	0.0118	18	c.48- others(35): Show c.48-70544_48-70543insGTACACACATATACACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581481	T T	TACGTGTA others(11): Show TACGTGTACACACATATAC	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0017 a0001c0001t0027g0017	1	169	0.0059	18	c.48- others(35): Show c.48-70514_48-70513insGTACACACATATACACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581508	G G	GTATACGT others(11): Show GTATACGTGTACACACATA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0080 a0001c0007t0080	a0001c0007t0080g0162 a0001c0007t0080g0162	1	169	0.0059	18	c.48- others(35): Show c.48-70484_48-70483insGTACACACATATATACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581538	G G	GTATACGT others(11): Show GTATACGTGTACACACATA	intron_variant intron_variant	MODIFIER	HG00673.hp1 NA19063.hp1 HG00673.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0086 a0001c0001t0005 a0001c0001t0086	a0001c0001t0005g0021 a0001c0001t0086g0031 a0001c0001t0005g0021 a0001c0001t0086g0031	2	169	0.0118	18	c.48- others(35): Show c.48-70454_48-70453insGTACACACATATATACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581568	G G	GTATACGT others(11): Show GTATACGTGTACACACATA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01106.hp1 HG02738.hp1 others(6): Show HG00140.hp1 HG01106.hp1 HG02738.hp1 HG02818.hp2 HG04115.hp1 HG04199.hp1 HG04228.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 others(4): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 a0001c0001t0037 a0001c0001t0083 a0001c0001t0084 a0001c0001t0118	a0001c0001t0001g0082 a0001c0001t0005g0001 a0001c0001t0005g0009 others(6): Show a0001c0001t0001g0082 a0001c0001t0005g0001 a0001c0001t0005g0009 a0001c0001t0005g0022 a0001c0001t0007g0089 a0001c0001t0037g0037 a0001c0001t0083g0024 a0001c0001t0084g0030 a0001c0001t0118g0088	9	169	0.0533	18	c.48- others(35): Show c.48-70424_48-70423insGTACACACATATATACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581568	G G	GTCTACGT others(11): Show GTCTACGTGTACACACATA	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02630.hp2 NA19088.hp1 HG00621.hp1 HG02630.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0064 a0001c0002t0029 a0001c0001t0003 a0001c0001t0064 a0001c0002t0029	a0001c0001t0003g0042 a0001c0001t0064g0084 a0001c0002t0029g0149 a0001c0001t0003g0042 a0001c0001t0064g0084 a0001c0002t0029g0149	3	169	0.0178	18	c.48- others(35): Show c.48-70430_48-70429insCTACGTGTACACACATAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581647	T T	TACACGTA others(11): Show TACACGTATACGTGTACAC	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0095 a0001c0004t0095	a0001c0004t0095g0113 a0001c0004t0095g0113	1	169	0.0059	18	c.48- others(35): Show c.48-70351_48-70350insCACGTATACGTGTACACA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148704440	A A	ATATATAT others(11): Show ATATATATTTATATATGTG	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0105 a0001c0002t0105	a0001c0002t0105g0117 a0001c0002t0105g0117	1	169	0.0059	18	c.104 others(39): Show c.1041+41679_1041+41680insTTATATATGTGTATATAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148761956	T T	TATATAGA others(11): Show TATATAGATATAGATATAG	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG02886.hp2 HG01943.hp1 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0051 a0001c0001t0006 a0001c0001t0051	a0001c0001t0006g0120 a0001c0001t0051g0069 a0001c0001t0006g0120 a0001c0001t0051g0069	2	169	0.0118	18	c.104 others(39): Show c.1042-47880_1042-47863dupTAGATATAGATATAGATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148824060	C C	CCTCTCTC others(11): Show CCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02615.hp2 HG02622.hp1 others(7): Show HG02074.hp1 HG02615.hp2 HG02622.hp1 HG02886.hp2 NA18943.hp1 NA18970.hp1 NA18995.hp1 NA19012.hp1 NA19240.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0001t0006 a0001c0001t0014 others(5): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0014 a0001c0001t0022 a0001c0001t0065 a0001c0001t0067 a0001c0002t0018 a0001c0002t0087	a0001c0001t0004g0043 a0001c0001t0006g0120 a0001c0001t0014g0055 others(7): Show a0001c0001t0004g0043 a0001c0001t0006g0120 a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0022g0134 a0001c0001t0065g0056 a0001c0001t0067g0057 a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0087g0147	10	169	0.0592	18	c.108 others(39): Show c.1087-13580_1087-13563dupCTCTCTCTCTCTCTCTCT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	4/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148839894	G G	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02258.hp1 HG01891.hp2 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0110 a0001c0007t0080 a0001c0001t0110 a0001c0007t0080	a0001c0001t0110g0118 a0001c0007t0080g0162 a0001c0001t0110g0118 a0001c0007t0080g0162	2	169	0.0118	18	c.117 others(37): Show c.1173+2186_1173+2203dupGTGTGTGTGTGTGTGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	5/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148975943	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0014 a0001c0001t0059g0014	1	169	0.0059	18	c.340 others(37): Show c.3405-1986_3405-1969dupAAAAAAAAAAAAAAAAAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	16/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148983953	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG01258.hp1 HG01433.hp1 others(11): Show HG00609.hp1 HG01258.hp1 HG01433.hp1 HG01884.hp1 HG02055.hp1 HG02280.hp2 HG02451.hp1 HG02615.hp2 HG02622.hp2 HG02698.hp1 HG02976.hp1 HG02976.hp2 NA18948.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0002 a0001c0001t0008 a0001c0001t0052 others(10): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0052 a0001c0001t0062 a0001c0001t0089 a0001c0001t0104 a0001c0002t0019 a0001c0002t0032 a0001c0002t0078 a0001c0002t0087 a0001c0002t0091 a0001c0003t0026 a0001c0003t0030	a0001c0001t0002g0062 a0001c0001t0008g0051 a0001c0001t0008g0059 others(11): Show a0001c0001t0002g0062 a0001c0001t0008g0051 a0001c0001t0008g0059 a0001c0001t0052g0064 a0001c0001t0062g0087 a0001c0001t0089g0110 a0001c0001t0104g0049 a0001c0002t0019g0107 a0001c0002t0032g0114 a0001c0002t0078g0152 a0001c0002t0087g0147 a0001c0002t0091g0136 a0001c0003t0026g0157 a0001c0003t0030g0158	14	169	0.0828	18	c.362 others(37): Show c.3623+3178_3623+3179insAAAAAAAAAAAAAAAAAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	19/20		INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF3_chr2_99540419_100147590	99648911	A A	ACTCTCTC others(11): Show ACTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0041 a0001c0001t0004g0041	1	100	0.0100	18	c.118 others(35): Show c.1184+714_1184+715insAGAGAGAGAGAGAGAGAG	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	13/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	99648917	A A	ACACACAC others(11): Show ACACACACACACACACTCT	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0059 a0002c0002t0001g0059	1	100	0.0100	18	c.118 others(35): Show c.1184+708_1184+709insAGAGTGTGTGTGTGTGTG	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	13/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	99724271	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01167.hp1 HG02523.hp2 others(7): Show HG01071.hp1 HG01167.hp1 HG02523.hp2 HG02630.hp1 HG03130.hp2 HG03209.hp2 HG03516.hp1 HG03540.hp2 NA20300.hp1 NA20300.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0003c0006 a0005c0011 a0001c0001 a0003c0006 a0005c0011	a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 others(7): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0012 a0001c0001t0022 a0001c0001t0025 a0001c0001t0033 a0003c0006t0001 a0003c0006t0006 a0005c0011t0009	a0001c0001t0002g0033 a0001c0001t0003g0100 a0001c0001t0007g0044 others(7): Show a0001c0001t0002g0033 a0001c0001t0003g0100 a0001c0001t0007g0044 a0001c0001t0012g0008 a0001c0001t0022g0019 a0001c0001t0025g0053 a0001c0001t0033g0038 a0003c0006t0001g0068 a0003c0006t0006g0052 a0005c0011t0009g0012	10	100	0.1000	18	c.109 others(37): Show c.1091+2788_1091+2805dupAAAAAAAAAAAAAAAAAA	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	11/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	100014783	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02647.hp1 HG02809.hp2 HG02559.hp2 HG02647.hp1 HG02809.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0004 a0001c0005t0005 a0001c0005t0027 a0001c0005t0004 a0001c0005t0005 a0001c0005t0027	a0001c0005t0004g0086 a0001c0005t0005g0092 a0001c0005t0027g0085 a0001c0005t0004g0086 a0001c0005t0005g0092 a0001c0005t0027g0085	3	100	0.0300	18	c.54- others(33): Show c.54-5869_54-5852dupAAAAAAAAAAAAAAAAAA	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	4/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	100104798	A A	AGCCGCCG others(11): Show AGCCGCCGCCGCCGCCGCC	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG04115.hp1 HG00438.hp2 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0006 a0001c0001t0001 a0001c0003t0006	a0001c0001t0001g0062 a0001c0003t0006g0063 a0001c0001t0001g0062 a0001c0003t0006g0063	2	100	0.0200	18	c.-64 others(33): Show c.-64-298_-64-281dupGGCGGCGGCGGCGGCGGC	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	3/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	100129382	C C	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0003 a0001c0001t0016g0003	1	100	0.0100	18	c.-22 others(33): Show c.-227-94_-227-77dupCACACACACACACACACA	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	1/24			chr2	TogoVar
AFF3_chr2_99540419_100147590	100129416	G G	GTGTGTGT others(11): Show GTGTGTGTGTGTGTGTGTA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01106.hp2 HG01358.hp2 others(1): Show HG00738.hp1 HG01106.hp2 HG01358.hp2 HG04115.hp1	a0001 a0001	a0001c0003 a0001c0014 a0001c0003 a0001c0014	a0001c0003t0001 a0001c0003t0002 a0001c0003t0006 others(1): Show a0001c0003t0001 a0001c0003t0002 a0001c0003t0006 a0001c0014t0004	a0001c0003t0001g0065 a0001c0003t0002g0064 a0001c0003t0006g0063 others(1): Show a0001c0003t0001g0065 a0001c0003t0002g0064 a0001c0003t0006g0063 a0001c0014t0004g0099	4	100	0.0400	18	c.-22 others(35): Show c.-227-111_-227-110insTACACACACACACACACA	AFF3	ENSG00000144218.21	transcript	ENST00000672756.2	protein_coding	1/24			chr2	TogoVar
AFMID_chr17_78182362_78212702	78187960	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG06807.hp2 HG01433.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0388 a0001c0001t0013g0291 a0001c0001t0001g0388 a0001c0001t0013g0291	2	446	0.0045	18	c.63+ others(31): Show c.63+539_63+556dupAAAAAAAAAAAAAAAAAA	AFMID	ENSG00000183077.16	transcript	ENST00000409257.10	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr17	TogoVar
AFP_chr4_73431221_73461174	73434131	A A	ATATATCT others(11): Show ATATATCTACATCTATATC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG01192.hp2 NA18964.hp2 others(4): Show HG00639.hp1 HG01192.hp2 NA18964.hp2 NA18974.hp1 NA18981.hp1 NA19012.hp1 NA19086.hp1	a0001 a0010 a0001 a0010	a0001c0001 a0001c0005 a0010c0011 a0001c0001 a0001c0005 a0010c0011	a0001c0001t0002 a0001c0005t0002 a0010c0011t0002 a0001c0001t0002 a0001c0005t0002 a0010c0011t0002	a0001c0001t0002g0005 a0001c0001t0002g0076 a0001c0001t0002g0101 others(2): Show a0001c0001t0002g0005 a0001c0001t0002g0076 a0001c0001t0002g0101 a0001c0005t0002g0002 a0010c0011t0002g0021	7	390	0.0180	18	c.-21 others(29): Show c.-2132_-2131insTATATCTACATCTATATC	AFP	ENSG00000081051.8	transcript	ENST00000395792.7	protein_coding		2089		chr4	TogoVar
AFTPH_chr2_64519328_64598005	64555989	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02135.hp1 NA18953.hp1 others(8): Show HG02040.hp2 HG02135.hp1 NA18953.hp1 NA18961.hp1 NA18972.hp1 NA18977.hp2 NA18981.hp1 NA19009.hp2 NA19011.hp2 NA19057.hp1 NA19079.hp2	a0002 a0006 a0002 a0006	a0002c0002 a0006c0006 a0002c0002 a0006c0006	a0002c0002t0002 a0006c0006t0002 a0002c0002t0002 a0006c0006t0002	a0002c0002t0002g0334 a0002c0002t0002g0335 a0002c0002t0002g0336 others(8): Show a0002c0002t0002g0334 a0002c0002t0002g0335 a0002c0002t0002g0336 a0002c0002t0002g0337 a0002c0002t0002g0338 a0002c0002t0002g0342 a0002c0002t0002g0345 a0002c0002t0002g0350 a0002c0002t0002g0355 a0002c0002t0002g0359 a0006c0006t0002g0354	11	372	0.0296	18	c.193 others(37): Show c.1935+2595_1935+2596insTTTTTTTTTTTTTTTTTT	AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
AFTPH_chr2_64519328_64598005	64596364	A A	ACACACAC others(11): Show ACACACACACACACACACG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0234 a0001c0001t0001g0234	1	372	0.0027	18	c.43 others(29): Show c.4329_*4330insCACACACACACACACACG	AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding		3360		chr2	TogoVar
AGAP1_chr2_235489043_236136793	235516070	G G	GCTGCTGC others(11): Show GCTGCTGCTGCTGCTGCTC	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01928.hp2 HG02080.hp2 others(10): Show HG00438.hp1 HG01928.hp2 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02572.hp1 HG02818.hp1 HG03098.hp1 HG03139.hp2 HG03579.hp1 HG03831.hp2 HG04199.hp1 HG04199.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0009 a0001c0017 a0002c0007	a0001c0001t0005 a0001c0001t0008 a0001c0001t0011 others(10): Show a0001c0001t0005 a0001c0001t0008 a0001c0001t0011 a0001c0001t0026 a0001c0002t0001 a0001c0002t0006 a0001c0002t0038 a0001c0003t0009 a0001c0005t0004 a0001c0009t0017 a0001c0017t0008 a0002c0007t0005 a0002c0007t0008	a0001c0001t0005g0012 a0001c0001t0008g0069 a0001c0001t0011g0098 others(10): Show a0001c0001t0005g0012 a0001c0001t0008g0069 a0001c0001t0011g0098 a0001c0001t0026g0095 a0001c0002t0001g0068 a0001c0002t0006g0093 a0001c0002t0038g0086 a0001c0003t0009g0096 a0001c0005t0004g0097 a0001c0009t0017g0037 a0001c0017t0008g0092 a0002c0007t0005g0094 a0002c0007t0008g0011	13	98	0.1327	18	c.163 others(37): Show c.163+21238_163+21239insCCTGCTGCTGCTGCTGCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235516076	G G	GCTGCTGC others(11): Show GCTGCTGCTGCTGCTGCTT	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0054 a0001c0001t0048g0054	1	98	0.0102	18	c.163 others(37): Show c.163+21244_163+21245insTCTGCTGCTGCTGCTGCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235536254	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01168.hp1 HG01192.hp1 others(25): Show HG00642.hp1 HG01168.hp1 HG01192.hp1 HG01496.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG02080.hp1 HG02083.hp2 HG02109.hp1 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02280.hp1 HG02280.hp2 HG02717.hp2 HG02896.hp1 HG03041.hp2 HG03453.hp1 HG03486.hp1 HG03516.hp1 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA20129.hp1 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0010 a0001c0012 a0002c0004 a0002c0007 a0003c0015	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(20): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010 a0001c0001t0019 a0001c0001t0024 a0001c0002t0001 a0001c0002t0004 a0001c0002t0034 a0001c0003t0009 a0001c0003t0022 a0001c0005t0001 a0001c0005t0004 a0001c0006t0006 a0001c0006t0037 a0001c0010t0001 a0001c0012t0009 a0002c0004t0001 a0002c0004t0006 a0002c0004t0029 a0002c0007t0018 a0003c0015t0002	a0001c0001t0002g0049 a0001c0001t0003g0036 a0001c0001t0003g0090 others(25): Show a0001c0001t0002g0049 a0001c0001t0003g0036 a0001c0001t0003g0090 a0001c0001t0005g0007 a0001c0001t0009g0074 a0001c0001t0010g0003 a0001c0001t0010g0014 a0001c0001t0019g0065 a0001c0001t0024g0077 a0001c0002t0001g0004 a0001c0002t0001g0010 a0001c0002t0001g0027 a0001c0002t0001g0073 a0001c0002t0004g0072 a0001c0002t0034g0084 a0001c0003t0009g0096 a0001c0003t0022g0055 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0006t0006g0019 a0001c0006t0037g0021 a0001c0010t0001g0032 a0001c0012t0009g0078 a0002c0004t0001g0082 a0002c0004t0006g0024 a0002c0004t0029g0083 a0002c0007t0018g0028 a0003c0015t0002g0075	28	98	0.2857	18	c.163 others(37): Show c.163+41411_163+41428dupCACACACACACACACACA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235536406	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03831.hp1 HG03516.hp2 HG03831.hp1	a0001 a0002 a0001 a0002	a0001c0019 a0002c0007 a0001c0019 a0002c0007	a0001c0019t0007 a0002c0007t0005 a0001c0019t0007 a0002c0007t0005	a0001c0019t0007g0056 a0002c0007t0005g0026 a0001c0019t0007g0056 a0002c0007t0005g0026	2	98	0.0204	18	c.163 others(37): Show c.163+41571_163+41588dupCACACACACACACACACA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235538427	A A	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG02976.hp1 HG03098.hp1 others(4): Show HG00642.hp2 HG02976.hp1 HG03098.hp1 HG03195.hp2 HG03471.hp2 NA19030.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0005 a0001c0008 others(3): Show a0001c0002 a0001c0005 a0001c0008 a0001c0009 a0001c0016 a0002c0004	a0001c0002t0013 a0001c0002t0038 a0001c0005t0040 others(4): Show a0001c0002t0013 a0001c0002t0038 a0001c0005t0040 a0001c0008t0001 a0001c0009t0015 a0001c0016t0007 a0002c0004t0001	a0001c0002t0013g0035 a0001c0002t0038g0086 a0001c0005t0040g0006 others(4): Show a0001c0002t0013g0035 a0001c0002t0038g0086 a0001c0005t0040g0006 a0001c0008t0001g0061 a0001c0009t0015g0038 a0001c0016t0007g0089 a0002c0004t0001g0017	7	98	0.0714	18	c.163 others(37): Show c.163+43595_163+43612dupTGTGTGTGTGTGTGTGTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235571932	T T	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01123.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0030 a0002c0004t0030	a0002c0004t0030g0045 a0002c0004t0030g0045	1	98	0.0102	18	c.163 others(37): Show c.163+77093_163+77110dupGTGTGTGTGTGTGTGTGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235643431	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0061 a0001c0008t0001g0061	1	98	0.0102	18	c.164 others(37): Show c.164-65736_164-65719dupAAAAAAAAAAAAAAAAAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235702934	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0013 a0001c0002t0001g0013	1	98	0.0102	18	c.164 others(35): Show c.164-6233_164-6232insTTTTTTTTTTTTTTTTTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235867536	A A	AGTGTGTG others(11): Show AGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02723.hp2 NA20129.hp2 HG02723.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0001 a0001c0001t0003 a0001c0002t0001	a0001c0001t0003g0034 a0001c0002t0001g0013 a0001c0001t0003g0034 a0001c0002t0001g0013	2	98	0.0204	18	c.105 others(39): Show c.1051-15787_1051-15770dupTGTGTGTGTGTGTGTGTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	9/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	236062436	T T	TTTGTTGT others(11): Show TTTGTTGTTGTTGTTGTTG	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0013 a0001c0002t0013	a0001c0002t0013g0035 a0001c0002t0013g0035	1	98	0.0102	18	c.211 others(39): Show c.2114+13164_2114+13181dupGTTGTTGTTGTTGTTGTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	16/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	236098611	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02572.hp2 HG03139.hp2 others(1): Show HG01884.hp2 HG02572.hp2 HG03139.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0001t0009 a0001c0001t0011 others(1): Show a0001c0001t0002 a0001c0001t0009 a0001c0001t0011 a0001c0003t0012	a0001c0001t0002g0060 a0001c0001t0009g0074 a0001c0001t0011g0098 others(1): Show a0001c0001t0002g0060 a0001c0001t0009g0074 a0001c0001t0011g0098 a0001c0003t0012g0066	4	98	0.0408	18	c.211 others(39): Show c.2115-21574_2115-21573insTTTTTTTTTTTTTTTTTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	16/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	236098620	C C	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 NA21309.hp2 HG02723.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0044 a0001c0001t0003 a0001c0001t0044	a0001c0001t0003g0034 a0001c0001t0044g0041 a0001c0001t0003g0034 a0001c0001t0044g0041	2	98	0.0204	18	c.211 others(39): Show c.2115-21570_2115-21553dupTTTTTTTTTTTTTTTTTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	16/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP3_chr7_151081475_151149434	151105792	C C	CCACACAC others(11): Show CCACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0118 a0001c0001t0001g0118	1	354	0.0028	18	c.332 others(37): Show c.332-10978_332-10961dupCACACACACACACACACA	AGAP3	ENSG00000133612.20	transcript	ENST00000397238.7	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
AGAP4_chr10_45820594_45852500	45829240	A A	ATTTCTTT others(11): Show ATTTCTTTGATTAATTTCT	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0142 a0002c0002t0001g0142	1	382	0.0026	18	c.534 others(35): Show c.534-1161_534-1160insAGAAATTAATCAAAGAAA	AGAP4	ENSG00000188234.15	transcript	ENST00000616763.6	protein_coding	6/7			chr10	TogoVar
AGAP6_chr10_49983406_50015499	50007392	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01071.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0221 a0003c0003t0003g0221	1	406	0.0025	18	c.534 others(33): Show c.534-624_534-607dupAAAAAAAAAAAAAAAAAA	AGAP6	ENSG00000204149.16	transcript	ENST00000412531.7	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
AGAP9_chr10_47496854_47528638	47497319	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02622.hp2 HG03130.hp1 HG02622.hp2 HG03130.hp1	a0003 a0003	a0003c0005 a0003c0018 a0003c0005 a0003c0018	a0003c0005t0004 a0003c0018t0004 a0003c0005t0004 a0003c0018t0004	a0003c0005t0004g0015 a0003c0018t0004g0160 a0003c0005t0004g0015 a0003c0018t0004g0160	2	206	0.0097	18	c.48 others(29): Show c.4832_*4833insTTTTTTTTTTTTTTTTTT	AGAP9	ENSG00000204172.12	transcript	ENST00000452145.6	protein_coding		4534		chr10	TogoVar

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