Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CDK13_chr7_39945256_40104580	40000137	A A	AGGCTGAG others(11): Show AGGCTGAGACAGGCAGATC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00642.hp1 HG00733.hp1 others(40): Show HG00140.hp1 HG00642.hp1 HG00733.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01106.hp2 HG01167.hp2 HG01169.hp2 HG01192.hp1 HG01243.hp1 HG01257.hp2 HG01358.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp1 HG01516.hp1 HG01517.hp2 HG01891.hp2 HG01943.hp2 HG01975.hp2 HG02055.hp2 HG02293.hp1 HG02698.hp2 HG02717.hp1 HG02735.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02965.hp2 HG03209.hp1 HG03225.hp1 HG03516.hp2 HG03688.hp1 HG03710.hp1 HG03834.hp2 HG04115.hp2 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04204.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0008 others(4): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0008 a0001c0001t0016 a0001c0001t0020 a0001c0001t0025 a0001c0001t0032	a0001c0001t0001g0012 a0001c0001t0001g0016 a0001c0001t0001g0023 others(40): Show a0001c0001t0001g0012 a0001c0001t0001g0016 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0006g0007 a0001c0001t0006g0008 a0001c0001t0006g0009 a0001c0001t0006g0010 a0001c0001t0006g0011 a0001c0001t0006g0013 a0001c0001t0006g0014 a0001c0001t0006g0018 a0001c0001t0006g0027 a0001c0001t0006g0029 a0001c0001t0008g0005 a0001c0001t0008g0006 a0001c0001t0008g0015 a0001c0001t0008g0019 a0001c0001t0008g0020 a0001c0001t0008g0021 a0001c0001t0008g0022 a0001c0001t0008g0025 a0001c0001t0008g0028 a0001c0001t0016g0036 a0001c0001t0020g0017 a0001c0001t0025g0042 a0001c0001t0032g0026	43	322	0.1335	18	c.218 others(35): Show c.2182+638_2182+655dupGGCTGAGACAGGCAGATC	CDK13	ENSG00000065883.18	transcript	ENST00000181839.10	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK13_chr7_39945256_40104580	40039434	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0009 a0001c0003t0009	a0001c0003t0009g0300 a0001c0003t0009g0300	1	322	0.0031	18	c.235 others(37): Show c.2354-6396_2354-6379dupTTTTTTTTTTTTTTTTTT	CDK13	ENSG00000065883.18	transcript	ENST00000181839.10	protein_coding	5/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK14_chr7_90591321_91215590	90598704	A A	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG03139.hp2 HG02027.hp1 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0012 a0001c0004t0001 a0001c0001t0012 a0001c0004t0001	a0001c0001t0012g0026 a0001c0004t0001g0025 a0001c0001t0012g0026 a0001c0004t0001g0025	2	168	0.0119	18	c.91+ others(33): Show c.91+1987_91+2004dupTTTTTTTTTTTTTTTTTT	CDK14	ENSG00000058091.17	transcript	ENST00000380050.8	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK14_chr7_90591321_91215590	90630888	A A	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0049 a0001c0001t0010g0049	1	168	0.0060	18	c.123 others(37): Show c.123+26651_123+26668dupGTGTGTGTGTGTGTGTGT	CDK14	ENSG00000058091.17	transcript	ENST00000380050.8	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK14_chr7_90591321_91215590	90659837	T T	TTCTCTCT others(11): Show TTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG02293.hp1 HG04204.hp2 HG00738.hp2 HG02293.hp1 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0038 a0001c0001t0001 a0001c0001t0009 a0001c0001t0038	a0001c0001t0001g0029 a0001c0001t0009g0056 a0001c0001t0038g0058 a0001c0001t0001g0029 a0001c0001t0009g0056 a0001c0001t0038g0058	3	168	0.0179	18	c.123 others(37): Show c.123+55610_123+55627dupCTCTCTCTCTCTCTCTCT	CDK14	ENSG00000058091.17	transcript	ENST00000380050.8	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK14_chr7_90591321_91215590	90863670	A A	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01358.hp1 HG02109.hp2 others(1): Show HG01256.hp1 HG01358.hp1 HG02109.hp2 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0017 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0017 a0001c0001t0023	a0001c0001t0001g0004 a0001c0001t0003g0114 a0001c0001t0017g0117 others(1): Show a0001c0001t0001g0004 a0001c0001t0003g0114 a0001c0001t0017g0117 a0001c0001t0023g0111	4	168	0.0238	18	c.639 others(33): Show c.639+411_639+428dupGTGTGTGTGTGTGTGTGT	CDK14	ENSG00000058091.17	transcript	ENST00000380050.8	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK14_chr7_90591321_91215590	90963086	A A	AGAGTGTG others(11): Show AGAGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG04115.hp2 HG04115.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0160 a0001c0001t0002g0160	1	168	0.0060	18	c.947 others(35): Show c.947+7270_947+7271insAGTGTGTGTGTGTGTGTG	CDK14	ENSG00000058091.17	transcript	ENST00000380050.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK14_chr7_90591321_91215590	91091501	T T	TTATATAT others(11): Show TTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02647.hp1 NA19043.hp2 HG02451.hp1 HG02647.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0010 a0001c0001t0006 a0001c0001t0010	a0001c0001t0006g0027 a0001c0001t0006g0030 a0001c0001t0010g0003 a0001c0001t0006g0027 a0001c0001t0006g0030 a0001c0001t0010g0003	3	168	0.0179	18	c.115 others(39): Show c.1154+12037_1154+12038insTATATATATATATATATA	CDK14	ENSG00000058091.17	transcript	ENST00000380050.8	protein_coding	12/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK14_chr7_90591321_91215590	91091501	T T	TTTTATAT others(11): Show TTTTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0037 a0002c0003t0001g0037	1	168	0.0060	18	c.115 others(39): Show c.1154+12022_1154+12023insTTATATATATATATATAT	CDK14	ENSG00000058091.17	transcript	ENST00000380050.8	protein_coding	12/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK14_chr7_90591321_91215590	91147141	G G	GTCTCTCT others(11): Show GTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0153 a0001c0001t0006g0153	1	168	0.0060	18	c.28 others(37): Show c.28+28938_*28+28955dupTCTCTCTCTCTCTCTCTC	CDK14	ENSG00000058091.17	transcript	ENST00000380050.8	protein_coding	14/14		INFO_REALIGN_3_PRIME	chr7	TogoVar
CDK15_chr2_201801537_201900550	201857232	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01258.hp1 HG02083.hp2 others(4): Show HG00639.hp1 HG01258.hp1 HG02083.hp2 HG02135.hp2 NA18522.hp2 NA19005.hp2 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0013	a0001c0001t0001g0224 a0001c0001t0001g0229 a0001c0001t0001g0285 others(4): Show a0001c0001t0001g0224 a0001c0001t0001g0229 a0001c0001t0001g0285 a0001c0001t0002g0235 a0001c0001t0002g0312 a0001c0001t0005g0254 a0001c0001t0013g0033	7	322	0.0217	18	c.100 others(37): Show c.1009+2311_1009+2312insAAAAAAAAAAAAAAAAAA	CDK15	ENSG00000138395.17	transcript	ENST00000652192.3	protein_coding	10/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
CDK15_chr2_201801537_201900550	201894073	C C	CCACACAC others(11): Show CCACACACACACACACACA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0052 a0001c0007t0052	a0001c0007t0052g0125 a0001c0007t0052g0125	1	322	0.0031	18	c.83 others(27): Show c.830_*847dupACACACACACACACACAC	CDK15	ENSG00000138395.17	transcript	ENST00000652192.3	protein_coding	14/14	3221	INFO_REALIGN_3_PRIME	chr2	TogoVar
CDK17_chr12_96273261_96405439	96277780	G G	GAGATATA others(11): Show GAGATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0173 a0001c0001t0001g0173	1	346	0.0029	18	c.24 others(29): Show c.2461_*2462insATATATATATATATATCT	CDK17	ENSG00000059758.8	transcript	ENST00000261211.8	protein_coding		480		chr12	TogoVar
CDK17_chr12_96273261_96405439	96277815	A A	ATATATAT others(11): Show ATATATATATATATATATG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0078 a0001c0001t0008g0078	1	346	0.0029	18	c.24 others(29): Show c.2426_*2427insCATATATATATATATATA	CDK17	ENSG00000059758.8	transcript	ENST00000261211.8	protein_coding		445		chr12	TogoVar
CDK17_chr12_96273261_96405439	96308229	T T	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02145.hp1 HG03540.hp2 HG01433.hp2 HG02145.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0011 a0001c0001t0007 a0001c0001t0011	a0001c0001t0007g0239 a0001c0001t0007g0240 a0001c0001t0011g0236 a0001c0001t0007g0239 a0001c0001t0007g0240 a0001c0001t0011g0236	3	346	0.0087	18	c.543 others(35): Show c.543+2805_543+2822dupTTTTTTTTTTTTTTTTTT	CDK17	ENSG00000059758.8	transcript	ENST00000261211.8	protein_coding	5/16			chr12	TogoVar
CDK17_chr12_96273261_96405439	96308731	A A	AAATAATA others(11): Show AAATAATAATAATAATAAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01106.hp2 HG01167.hp1 others(16): Show HG00642.hp1 HG01106.hp2 HG01167.hp1 HG01169.hp1 HG01361.hp2 HG01975.hp2 HG02055.hp1 HG02083.hp1 HG02132.hp1 HG02735.hp1 HG03927.hp1 HG03942.hp1 NA18952.hp1 NA18960.hp2 NA18962.hp1 NA18977.hp1 NA19010.hp2 NA19043.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007	a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0185 others(16): Show a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0185 a0001c0001t0001g0204 a0001c0001t0001g0226 a0001c0001t0001g0247 a0001c0001t0002g0305 a0001c0001t0003g0021 a0001c0001t0003g0034 a0001c0001t0003g0035 a0001c0001t0004g0313 a0001c0001t0004g0314 a0001c0001t0004g0315 a0001c0001t0004g0317 a0001c0001t0004g0337 a0001c0001t0004g0340 a0001c0001t0004g0341 a0001c0001t0006g0325 a0001c0001t0007g0238	19	346	0.0549	18	c.543 others(35): Show c.543+2303_543+2320dupATTATTATTATTATTATT	CDK17	ENSG00000059758.8	transcript	ENST00000261211.8	protein_coding	5/16			chr12	TogoVar
CDK17_chr12_96273261_96405439	96308751	A A	ATAATAAT others(11): Show ATAATAATAATAATAATAG	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG02027.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0285 a0001c0002t0002g0285	1	346	0.0029	18	c.543 others(35): Show c.543+2300_543+2301insCTATTATTATTATTATTA	CDK17	ENSG00000059758.8	transcript	ENST00000261211.8	protein_coding	5/16			chr12	TogoVar
CDK17_chr12_96273261_96405439	96368806	C C	CAGAGGGG others(11): Show CAGAGGGGGGGGGGGGGGG	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0086 a0001c0001t0008g0086	1	346	0.0029	18	c.-30 others(37): Show c.-30+31179_-30+31180insCCCCCCCCCCCCCCCTCT	CDK17	ENSG00000059758.8	transcript	ENST00000261211.8	protein_coding	1/16			chr12	TogoVar
CDK17_chr12_96273261_96405439	96368806	C C	CGGGGGGG others(11): Show CGGGGGGGGGGGGGGGGGG	intron_variant intron_variant	MODIFIER	HG03017.hp2 NA18962.hp1 NA18966.hp2 others(1): Show HG03017.hp2 NA18962.hp1 NA18966.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0002t0002 a0001c0001t0001 a0001c0001t0004 a0001c0002t0002	a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0004g0337 others(1): Show a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0004g0337 a0001c0002t0002g0275	4	346	0.0116	18	c.-30 others(37): Show c.-30+31162_-30+31179dupCCCCCCCCCCCCCCCCCC	CDK17	ENSG00000059758.8	transcript	ENST00000261211.8	protein_coding	1/16			chr12	TogoVar
CDK18_chr1_205499669_205537790	205532937	G G	GTATATAT others(11): Show GTATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0104 a0001c0001t0003g0104	1	388	0.0026	18	c.15 others(29): Show c.1559_*1560insTATATATATATATATATA	CDK18	ENSG00000117266.16	transcript	ENST00000429964.7	protein_coding		148		chr1	TogoVar
CDK18_chr1_205499669_205537790	205532937	G G	GTGTGTAT others(11): Show GTGTGTATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02602.hp2 NA19055.hp2 HG02602.hp2 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0102 a0001c0001t0003g0274 a0001c0001t0003g0102 a0001c0001t0003g0274	2	388	0.0052	18	c.15 others(29): Show c.1559_*1560insTGTGTATATATATATATA	CDK18	ENSG00000117266.16	transcript	ENST00000429964.7	protein_coding		148		chr1	TogoVar
CDK18_chr1_205499669_205537790	205532937	G G	GTGTGTGT others(11): Show GTGTGTGTGTGTGTGTATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0139 a0001c0001t0004g0139	1	388	0.0026	18	c.15 others(29): Show c.1559_*1560insTGTGTGTGTGTGTGTATA	CDK18	ENSG00000117266.16	transcript	ENST00000429964.7	protein_coding		148		chr1	TogoVar
CDK18_chr1_205499669_205537790	205532937	G G	GTGTGTGT others(11): Show GTGTGTGTGTGTGTGTGTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02273.hp2 HG03688.hp1 HG02273.hp2 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0011 a0001c0001t0004g0138 a0001c0001t0004g0011 a0001c0001t0004g0138	2	388	0.0052	18	c.15 others(29): Show c.1559_*1560insTGTGTGTGTGTGTGTGTA	CDK18	ENSG00000117266.16	transcript	ENST00000429964.7	protein_coding		148		chr1	TogoVar
CDK19_chr6_110604978_110820469	110734520	G G	GCTCGCTC others(11): Show GCTCGCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01168.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0289 a0001c0001t0009g0289	1	300	0.0033	18	c.204 others(37): Show c.204+11605_204+11606insAGAGAGAGAGAGAGCGAG	CDK19	ENSG00000155111.15	transcript	ENST00000368911.8	protein_coding	2/12			chr6	TogoVar
CDK19_chr6_110604978_110820469	110734520	G G	GCTCTCTC others(11): Show GCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01168.hp1 HG01358.hp1 others(11): Show HG01071.hp2 HG01168.hp1 HG01358.hp1 HG01928.hp2 HG02135.hp2 HG02273.hp1 HG02451.hp2 HG03834.hp1 HG03927.hp2 HG04115.hp2 NA18968.hp1 NA19011.hp1 NA19043.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0014 a0001c0001t0016	a0001c0001t0001g0086 a0001c0001t0002g0072 a0001c0001t0002g0079 others(11): Show a0001c0001t0001g0086 a0001c0001t0002g0072 a0001c0001t0002g0079 a0001c0001t0002g0080 a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0004g0047 a0001c0001t0005g0010 a0001c0001t0005g0012 a0001c0001t0005g0013 a0001c0001t0005g0016 a0001c0001t0006g0041 a0001c0001t0014g0020 a0001c0001t0016g0276	14	300	0.0467	18	c.204 others(37): Show c.204+11588_204+11605dupAGAGAGAGAGAGAGAGAG	CDK19	ENSG00000155111.15	transcript	ENST00000368911.8	protein_coding	2/12			chr6	TogoVar
CDK19_chr6_110604978_110820469	110759416	A A	AATATATA others(11): Show AATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0219 a0001c0001t0004g0219	1	300	0.0033	18	c.129 others(37): Show c.129-13216_129-13215insATATATATATATATATAT	CDK19	ENSG00000155111.15	transcript	ENST00000368911.8	protein_coding	1/12			chr6	TogoVar
CDK2AP1_chr12_123255976_123276856	123274789	A A	AGGAAGGA others(11): Show AGGAAGGAAGGAAGGAAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19090.hp2 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0023	1	328	0.0031	18	c.-31 others(29): Show c.-3172_-3171insCCTTCCTTCCTTCCTTCC	CDK2AP1	ENSG00000111328.7	transcript	ENST00000261692.7	protein_coding		2934		chr12	TogoVar
CDK5RAP1_chr20_33353839_33406519	33373149	C C	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03225.hp1 NA18522.hp1 HG03225.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0182 a0001c0001t0001g0186 a0001c0001t0001g0182 a0001c0001t0001g0186	2	358	0.0056	18	c.120 others(35): Show c.1206-470_1206-453dupACACACACACACACACAC	CDK5RAP1	ENSG00000101391.21	transcript	ENST00000346416.7	protein_coding	9/13			chr20	TogoVar
CDK5RAP2_chr9_120383875_120585167	120413809	A A	AGGAGAGG others(11): Show AGGAGAGGGGAGGGAGGAG	intron_variant intron_variant	MODIFIER	NA19077.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0155 a0001c0001t0001g0155	1	232	0.0043	18	c.429 others(37): Show c.4297+1230_4297+1231insCTCCTCCCTCCCCTCTCC	CDK5RAP2	ENSG00000136861.19	transcript	ENST00000349780.9	protein_coding	28/37			chr9	TogoVar
CDK5RAP2_chr9_120383875_120585167	120413823	A A	AGGAGGGA others(11): Show AGGAGGGAGGAGGGAGGAG	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0131 a0003c0003t0001g0131	1	232	0.0043	18	c.429 others(37): Show c.4297+1199_4297+1216dupCTCCTCCCTCCTCCCTCC	CDK5RAP2	ENSG00000136861.19	transcript	ENST00000349780.9	protein_coding	28/37			chr9	TogoVar
CDK5RAP2_chr9_120383875_120585167	120452238	G G	GTCTCTCT others(11): Show GTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG03041.hp2 HG02723.hp2 HG03041.hp2	a0007 a0007	a0007c0005 a0007c0005	a0007c0005t0001 a0007c0005t0007 a0007c0005t0001 a0007c0005t0007	a0007c0005t0001g0004 a0007c0005t0007g0095 a0007c0005t0001g0004 a0007c0005t0007g0095	2	232	0.0086	18	c.279 others(37): Show c.2793+1200_2793+1217dupGAGAGAGAGAGAGAGAGA	CDK5RAP2	ENSG00000136861.19	transcript	ENST00000349780.9	protein_coding	21/37			chr9	TogoVar
CDK6_chr7_92599921_92841573	92672134	C C	CATATATA others(11): Show CATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0100 a0001c0001t0002g0100	1	124	0.0081	18	c.538 others(33): Show c.538-617_538-600dupATATATATATATATATAT	CDK6	ENSG00000105810.10	transcript	ENST00000424848.3	protein_coding	4/7			chr7	TogoVar
CDK6_chr7_92599921_92841573	92672160	T T	TATATATA others(11): Show TATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	124	0.0081	18	c.538 others(33): Show c.538-626_538-625insGTATATATATATATATAT	CDK6	ENSG00000105810.10	transcript	ENST00000424848.3	protein_coding	4/7			chr7	TogoVar
CDK6_chr7_92599921_92841573	92672242	C C	CACACACA others(11): Show CACACACACACACACACAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03471.hp1 NA19030.hp1 HG03098.hp1 HG03471.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008	a0001c0001t0004g0015 a0001c0001t0006g0065 a0001c0001t0008g0041 a0001c0001t0004g0015 a0001c0001t0006g0065 a0001c0001t0008g0041	3	124	0.0242	18	c.538 others(33): Show c.538-708_538-707insATGTGTGTGTGTGTGTGT	CDK6	ENSG00000105810.10	transcript	ENST00000424848.3	protein_coding	4/7			chr7	TogoVar
CDK6_chr7_92599921_92841573	92778946	T T	TATATATA others(11): Show TATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0020 a0001c0001t0013g0020	1	124	0.0081	18	c.234 others(35): Show c.234-4116_234-4115insTTATATATATATATATAT	CDK6	ENSG00000105810.10	transcript	ENST00000424848.3	protein_coding	2/7			chr7	TogoVar
CDK7_chr5_69229886_69282430	69261524	G G	GTGTGTGT others(11): Show GTGTGTGTGTGTGTGTGTA	intron_variant intron_variant	MODIFIER	HG02602.hp2 NA18970.hp2 NA18984.hp2 HG02602.hp2 NA18970.hp2 NA18984.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0149 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0149	3	375	0.0080	18	c.528 others(33): Show c.528-680_528-679insGTGTGTGTGTGTGTGTAT	CDK7	ENSG00000134058.12	transcript	ENST00000256443.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CDK8_chr13_26249129_26410238	26363327	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19077.hp1 NA21309.hp2 NA19077.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0111 a0001c0001t0001g0163 a0001c0001t0001g0111 a0001c0001t0001g0163	2	328	0.0061	18	c.456 others(35): Show c.456+9461_456+9462insAAAAAAAAAAAAAAAAAA	CDK8	ENSG00000132964.13	transcript	ENST00000381527.8	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDK8_chr13_26249129_26410238	26408766	A A	AACACACA others(11): Show AACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02129.hp1 HG02132.hp2 HG03688.hp1 others(2): Show HG02129.hp1 HG02132.hp2 HG03688.hp1 NA19240.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0003 a0001c0001t0001g0060 a0001c0001t0001g0198 others(2): Show a0001c0001t0001g0003 a0001c0001t0001g0060 a0001c0001t0001g0198 a0001c0001t0001g0208 a0001c0002t0001g0032	5	328	0.0152	18	c.46 others(29): Show c.4685_*4686insACACACACACACACACAC	CDK8	ENSG00000132964.13	transcript	ENST00000381527.8	protein_coding		3529		chr13	TogoVar
CDKAL1_chr6_20529457_21237404	20609262	T T	TTCTTCCT others(11): Show TTCTTCCTCCTCCTTCTCC	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02965.hp2 HG03225.hp1 HG02572.hp2 HG02965.hp2 HG03225.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0004 a0001c0001t0018 a0002c0003t0010 a0001c0001t0004 a0001c0001t0018 a0002c0003t0010	a0001c0001t0004g0002 a0001c0001t0018g0005 a0002c0003t0010g0134 a0001c0001t0004g0002 a0001c0001t0018g0005 a0002c0003t0010g0134	3	196	0.0153	18	c.287 others(37): Show c.287-40029_287-40028insTTCCTCCTCCTTCTCCTC	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	4/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	20609267	C C	CCTCCTCC others(11): Show CCTCCTCCTTCTCCTCCTT	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0043 a0001c0002t0043	a0001c0002t0043g0190 a0001c0002t0043g0190	1	196	0.0051	18	c.287 others(37): Show c.287-40021_287-40020insCCTTCTCCTCCTTCTCCT	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	4/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	20694042	T T	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTATA	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0189 a0001c0001t0005g0189	1	196	0.0051	18	c.371 others(37): Show c.371+44680_371+44681insATATGTGTGTGTGTGTGT	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	5/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	20799040	G G	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0018 a0001c0004t0018	a0001c0004t0018g0017 a0001c0004t0018g0017	1	196	0.0051	18	c.638 others(37): Show c.638+17787_638+17804dupTTTTTTTTTTTTTTTTTT	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	8/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	20980192	G G	GATAGATA others(11): Show GATAGATATAGATATAGAT	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03453.hp2 HG03471.hp1 HG03139.hp1 HG03453.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0001t0021 a0001c0009t0004 a0001c0001t0001 a0001c0001t0021 a0001c0009t0004	a0001c0001t0001g0003 a0001c0001t0021g0177 a0001c0009t0004g0027 a0001c0001t0001g0003 a0001c0001t0021g0177 a0001c0009t0004g0027	3	196	0.0153	18	c.910 others(37): Show c.910-20007_910-19990dupGATATAGATATAGATATA	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	10/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	20988182	A A	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG03540.hp1 HG01978.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0026 a0001c0002t0013 a0001c0001t0026 a0001c0002t0013	a0001c0001t0026g0058 a0001c0002t0013g0034 a0001c0001t0026g0058 a0001c0002t0013g0034	2	196	0.0102	18	c.910 others(37): Show c.910-12025_910-12008dupGTGTGTGTGTGTGTGTGT	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	10/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	21003367	T T	TACACACA others(11): Show TACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0128 a0001c0004t0001g0128	1	196	0.0051	18	c.105 others(37): Show c.1055+2996_1055+2997insCACACACACACACACACA	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	11/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	21003371	T T	TATATATA others(11): Show TATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG04184.hp1 HG00323.hp2 HG04184.hp1	a0001 a0005 a0001 a0005	a0001c0002 a0005c0014 a0001c0002 a0005c0014	a0001c0002t0003 a0005c0014t0008 a0001c0002t0003 a0005c0014t0008	a0001c0002t0003g0170 a0005c0014t0008g0119 a0001c0002t0003g0170 a0005c0014t0008g0119	2	196	0.0102	18	c.105 others(37): Show c.1055+3000_1055+3001insTATATATATATACACACA	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	11/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	21003371	T T	TATATATA others(11): Show TATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG01934.hp1 HG02647.hp2 others(3): Show HG00609.hp1 HG01934.hp1 HG02647.hp2 HG03017.hp2 NA19002.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0001 a0001c0001t0024 a0001c0001t0046 others(3): Show a0001c0001t0001 a0001c0001t0024 a0001c0001t0046 a0001c0002t0016 a0001c0002t0040 a0001c0005t0001	a0001c0001t0001g0065 a0001c0001t0024g0158 a0001c0001t0046g0077 others(3): Show a0001c0001t0001g0065 a0001c0001t0024g0158 a0001c0001t0046g0077 a0001c0002t0016g0045 a0001c0002t0040g0125 a0001c0005t0001g0009	6	196	0.0306	18	c.105 others(37): Show c.1055+3000_1055+3001insTATATATATATATACACA	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	11/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	21003371	T T	TATATATA others(11): Show TATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02273.hp1 HG02300.hp1 others(1): Show HG00639.hp2 HG02273.hp1 HG02300.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0010 a0001c0002t0007 others(1): Show a0001c0001t0002 a0001c0001t0010 a0001c0002t0007 a0001c0002t0012	a0001c0001t0002g0141 a0001c0001t0010g0051 a0001c0002t0007g0154 others(1): Show a0001c0001t0002g0141 a0001c0001t0010g0051 a0001c0002t0007g0154 a0001c0002t0012g0076	4	196	0.0204	18	c.105 others(37): Show c.1055+3000_1055+3001insTATATATATATATATACA	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	11/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKAL1_chr6_20529457_21237404	21079976	C C	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01256.hp1 HG01258.hp2 others(10): Show HG01255.hp1 HG01256.hp1 HG01258.hp2 HG02056.hp1 HG02132.hp1 HG02615.hp1 HG03017.hp2 HG03041.hp1 HG03130.hp1 NA18966.hp1 NA18970.hp2 NA18983.hp2 NA18990.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0006 others(3): Show a0001c0001 a0001c0002 a0001c0006 a0001c0013 a0002c0003 a0002c0007	a0001c0001t0001 a0001c0001t0007 a0001c0001t0009 others(9): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0009 a0001c0001t0015 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0008 a0001c0006t0003 a0001c0013t0004 a0002c0003t0004 a0002c0007t0030	a0001c0001t0001g0065 a0001c0001t0007g0164 a0001c0001t0009g0087 others(10): Show a0001c0001t0001g0065 a0001c0001t0007g0164 a0001c0001t0009g0087 a0001c0001t0009g0089 a0001c0001t0015g0095 a0001c0002t0002g0046 a0001c0002t0003g0073 a0001c0002t0005g0161 a0001c0002t0008g0040 a0001c0006t0003g0029 a0001c0013t0004g0006 a0002c0003t0004g0132 a0002c0007t0030g0025	13	196	0.0663	18	c.123 others(39): Show c.1236+14764_1236+14781dupGTGTGTGTGTGTGTGTGT	CDKAL1	ENSG00000145996.11	transcript	ENST00000274695.8	protein_coding	12/15		INFO_REALIGN_3_PRIME	chr6	TogoVar
CDKL1_chr14_50321265_50401881	50380802	C C	CTTTGTTT others(11): Show CTTTGTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0036 a0001c0001t0001g0036	1	306	0.0033	18	c.168 others(37): Show c.168+14898_168+14899insAAAAAAAAAAAAAACAAA	CDKL1	ENSG00000100490.10	transcript	ENST00000395834.6	protein_coding	2/9			chr14	TogoVar

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