Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRC40_chr1_70139805_70210579	70190677	T T	TAAAAAAA others(12): Show TAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG03486.hp2 HG03579.hp2 others(1): Show HG02886.hp2 HG03486.hp2 HG03579.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0139 a0001c0001t0001g0168 a0001c0001t0001g0169 others(1): Show a0001c0001t0001g0139 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0174	4	320	0.0125	19	c.152 others(36): Show c.152-1423_152-1405dupTTTTTTTTTTTTTTTTTTT	LRRC40	ENSG00000066557.6	transcript	ENST00000370952.4	protein_coding	1/14			chr1	TogoVar
LRRC49_chr15_70887826_71058658	71058038	T T	TCCCAGAG others(12): Show TCCCAGAGTCTCACAGGAAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0159 a0002c0002t0001g0159	1	262	0.0038	19	c.84 others(30): Show c.8426_*8427insCCCAGAGTCTCACAGGAAC	LRRC49	ENSG00000137821.12	transcript	ENST00000260382.10	protein_coding		4381		chr15	TogoVar
LRRC4C_chr11_40109209_41464652	40353212	G G	GATTTTTT others(12): Show GATTTTTTTTTTTTTAGATT	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	48	0.0208	19	c.-26 others(40): Show c.-269-33492_-269-33491insAATCTAAAAAAAAAAAAAT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40898353	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02922.hp1 HG02965.hp2 others(2): Show HG02809.hp2 HG02922.hp1 HG02965.hp2 HG02970.hp1 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0002c0003t0001 a0001c0001t0001 a0001c0001t0002 a0002c0003t0001	a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0041 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0041 a0001c0001t0002g0043 a0002c0003t0001g0017	5	48	0.1042	19	c.-40 others(40): Show c.-407+35263_-407+35281dupTTTTTTTTTTTTTTTTTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41051520	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01074.hp1 NA19030.hp1 HG01074.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0027 a0001c0002t0001g0029 a0001c0001t0001g0027 a0001c0002t0001g0029	2	48	0.0417	19	c.-49 others(42): Show c.-495-117816_-495-117798dupTTTTTTTTTTTTTTTTTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41408755	A A	AAAAAAAA others(12): Show AAAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0001 a0001c0002t0001g0001	1	48	0.0208	19	c.-49 others(40): Show c.-496+50675_-496+50676insGTTTTTTTTTTTTTTTTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC56_chr11_532527_559912	542580	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG02970.hp2 HG03453.hp1 others(5): Show HG01167.hp2 HG02970.hp2 HG03453.hp1 HG03516.hp1 NA18967.hp2 NA19000.hp2 NA19043.hp2 NA20300.hp2	a0002 a0024 a0002 a0024	a0002c0002 a0024c0030 a0002c0002 a0024c0030	a0002c0002t0003 a0024c0030t0026 a0002c0002t0003 a0024c0030t0026	a0002c0002t0003g0011 a0002c0002t0003g0060 a0002c0002t0003g0080 others(3): Show a0002c0002t0003g0011 a0002c0002t0003g0060 a0002c0002t0003g0080 a0002c0002t0003g0098 a0002c0002t0003g0103 a0024c0030t0026g0075	8	387	0.0207	19	c.265 others(34): Show c.265+962_265+980dupAAAAAAAAAAAAAAAAAAA	LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	5/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC56_chr11_532527_559912	551562	T T	TGGAGGCC others(12): Show TGGAGGCCAGTAGGGGGGGA	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0013 a0003c0003t0013	a0003c0003t0013g0120 a0003c0003t0013g0120	1	387	0.0026	19	c.797 others(32): Show c.797-87_797-86insAGGCCAGTAGGGGGGGAGG	LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	9/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC58_chr3_120319509_120354354	120347379	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00597.hp2 HG00639.hp1 others(21): Show HG00140.hp1 HG00597.hp2 HG00639.hp1 HG00735.hp2 HG01070.hp1 HG01109.hp2 HG01169.hp1 HG01192.hp2 HG01243.hp1 HG01517.hp1 HG01517.hp2 HG01928.hp1 HG01934.hp2 HG01981.hp2 HG01993.hp1 HG02145.hp2 HG03492.hp1 HG03540.hp2 HG03688.hp2 HG03831.hp1 HG03834.hp1 NA18978.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0003 a0001c0003t0003 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0003t0003 a0001c0003t0057	a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0003g0006 others(7): Show a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0003g0006 a0001c0001t0003g0166 a0001c0003t0003g0004 a0001c0003t0003g0174 a0001c0003t0003g0176 a0001c0003t0003g0177 a0001c0003t0003g0178 a0001c0003t0057g0175	24	376	0.0638	19	c.500 others(36): Show c.500+1346_500+1364dupAAAAAAAAAAAAAAAAAAA	LRRC58	ENSG00000163428.4	transcript	ENST00000295628.4	protein_coding	1/3			chr3	TogoVar
LRRC63_chr13_46206928_46282115	46276854	A A	ATATATAT others(12): Show ATATATATATATATATATAT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0317 a0001c0001t0045g0317	1	386	0.0026	19	c.64 others(26): Show c.64_*65insATATATTATATATATATAT	LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	10/10	65	INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC69_chr8_91097619_91224257	91176134	A A	ATATATAT others(12): Show ATATATATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18972.hp1 NA19081.hp2 NA18972.hp1 NA19081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0288 a0001c0001t0001g0294 a0001c0001t0001g0288 a0001c0001t0001g0294	2	318	0.0063	19	c.652 others(38): Show c.652-13387_652-13386insATATATATATTTTTTTTTT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC69_chr8_91097619_91224257	91176134	A A	ATATATAT others(12): Show ATATATATATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG03209.hp2 HG06807.hp2 HG02970.hp1 HG03209.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0133 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0133	3	318	0.0094	19	c.652 others(38): Show c.652-13387_652-13386insATATATATTTTTTTTTTTT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC69_chr8_91097619_91224257	91176134	A A	ATATATAT others(12): Show ATATATATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0057	1	318	0.0031	19	c.652 others(38): Show c.652-13387_652-13386insATATATTTTTTTTTTTTTT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC71_chr1_156915632_156938094	156936493	A A	ATATATAT others(12): Show ATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00280.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0106 a0002c0002t0001g0106	1	402	0.0025	19	c.35 others(30): Show c.3524_*3525insTATATATATATATATATAT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		3400		chr1	TogoVar
LRRC71_chr1_156915632_156938094	156936495	A A	ATATATAT others(12): Show ATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	402	0.0025	19	c.35 others(30): Show c.3526_*3527insTATATATATATATATATAT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		3402		chr1	TogoVar
LRRC71_chr1_156915632_156938094	156936497	A A	ATATATAT others(12): Show ATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01943.hp1 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0253 a0001c0001t0001g0253	1	402	0.0025	19	c.35 others(30): Show c.3528_*3529insTATATATATATATATATAT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		3404		chr1	TogoVar
LRRC7_chr1_69562922_70149364	69650539	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02572.hp1 HG02630.hp1 others(4): Show HG02055.hp2 HG02572.hp1 HG02630.hp1 HG02970.hp1 HG03195.hp2 HG03710.hp2 NA19000.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0006 a0001c0001 a0001c0003 a0002c0006	a0001c0001t0011 a0001c0001t0035 a0001c0001t0076 others(3): Show a0001c0001t0011 a0001c0001t0035 a0001c0001t0076 a0001c0003t0020 a0001c0003t0074 a0002c0006t0045	a0001c0001t0011g0035 a0001c0001t0011g0042 a0001c0001t0035g0020 others(4): Show a0001c0001t0011g0035 a0001c0001t0011g0042 a0001c0001t0035g0020 a0001c0001t0076g0053 a0001c0003t0020g0005 a0001c0003t0074g0054 a0002c0006t0045g0025	7	108	0.0648	19	c.3-2 others(34): Show c.3-27827_3-27826insAAAAAAAAAAAAAAAAAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69865469	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02486.hp2 HG02572.hp1 others(4): Show HG01074.hp2 HG02486.hp2 HG02572.hp1 HG02647.hp2 HG02976.hp1 HG03704.hp2 HG04115.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0001c0003 a0002c0006 others(1): Show a0001c0001 a0001c0003 a0002c0006 a0008c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0055 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0055 a0001c0003t0031 a0002c0006t0008 a0002c0006t0045 a0008c0016t0065	a0001c0001t0001g0012 a0001c0001t0002g0103 a0001c0001t0055g0039 others(4): Show a0001c0001t0001g0012 a0001c0001t0002g0103 a0001c0001t0055g0039 a0001c0003t0031g0034 a0002c0006t0008g0024 a0002c0006t0045g0025 a0008c0016t0065g0052	7	108	0.0648	19	c.647 others(38): Show c.647+27193_647+27211dupTTTTTTTTTTTTTTTTTTT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	7/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	70005912	A A	AACTTCAC others(12): Show AACTTCACACAACAAAGTAC	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0028 a0001c0001t0017g0028	1	108	0.0093	19	c.100 others(38): Show c.1005-5885_1005-5884insACTTCACACAACAAAGTAC	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	11/26			chr1	TogoVar
LRRC7_chr1_69562922_70149364	70082781	A A	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01175.hp1 HG01515.hp1 others(4): Show HG01167.hp2 HG01175.hp1 HG01515.hp1 HG03942.hp1 NA18974.hp1 NA19004.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0012 a0001c0001t0022 others(4): Show a0001c0001t0007 a0001c0001t0012 a0001c0001t0022 a0001c0001t0070 a0001c0001t0071 a0001c0001t0072 a0001c0001t0073	a0001c0001t0007g0104 a0001c0001t0012g0074 a0001c0001t0022g0088 others(4): Show a0001c0001t0007g0104 a0001c0001t0012g0074 a0001c0001t0022g0088 a0001c0001t0070g0064 a0001c0001t0071g0065 a0001c0001t0072g0062 a0001c0001t0073g0066	7	108	0.0648	19	c.445 others(38): Show c.4452+6496_4452+6514dupTTTTTTTTTTTTTTTTTTT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC9_chr14_59915144_60071817	60067740	A A	ATATATAT others(12): Show ATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG06807.hp1 HG06807.hp2 HG06807.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0081 a0001c0001t0001g0226 a0001c0001t0001g0081 a0001c0001t0001g0226	2	322	0.0062	19	c.43 others(30): Show c.4378_*4379insTATATATATATATATATAT	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding		924		chr14	TogoVar
LRRFIP1_chr2_237622587_237786643	237681678	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03831.hp1 NA18989.hp2 others(2): Show HG03225.hp2 HG03831.hp1 NA18989.hp2 NA18994.hp2 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0003 a0001c0001t0038 a0001c0002t0003 others(2): Show a0001c0001t0003 a0001c0001t0038 a0001c0002t0003 a0001c0002t0009 a0001c0005t0023	a0001c0001t0003g0267 a0001c0001t0038g0078 a0001c0002t0003g0218 others(2): Show a0001c0001t0003g0267 a0001c0001t0038g0078 a0001c0002t0003g0218 a0001c0002t0009g0199 a0001c0005t0023g0045	5	276	0.0181	19	c.97- others(36): Show c.97-26865_97-26847dupTTTTTTTTTTTTTTTTTTT	LRRFIP1	ENSG00000124831.20	transcript	ENST00000308482.14	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
LRRIQ1_chr12_85031351_85250105	85174701	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01070.hp1 HG01071.hp1 others(18): Show HG00642.hp1 HG01070.hp1 HG01071.hp1 HG01123.hp1 HG02080.hp1 HG02135.hp1 HG02280.hp2 HG02630.hp2 HG02698.hp2 HG02809.hp1 HG02970.hp1 HG03098.hp2 HG03486.hp1 HG06807.hp1 NA18945.hp1 NA18963.hp1 NA18982.hp2 NA18983.hp1 NA18984.hp1 NA18999.hp1 NA19011.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0014	a0001c0001 a0001c0009 a0002c0003 others(4): Show a0001c0001 a0001c0009 a0002c0003 a0003c0004 a0004c0008 a0005c0006 a0014c0014	a0001c0001t0001 a0001c0009t0001 a0002c0003t0001 others(4): Show a0001c0001t0001 a0001c0009t0001 a0002c0003t0001 a0003c0004t0001 a0004c0008t0001 a0005c0006t0001 a0014c0014t0001	a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0009t0001g0223 others(18): Show a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0009t0001g0223 a0002c0003t0001g0171 a0002c0003t0001g0172 a0002c0003t0001g0177 a0002c0003t0001g0179 a0002c0003t0001g0184 a0002c0003t0001g0187 a0002c0003t0001g0188 a0002c0003t0001g0190 a0002c0003t0001g0193 a0003c0004t0001g0204 a0003c0004t0001g0212 a0003c0004t0001g0214 a0004c0008t0001g0221 a0004c0008t0001g0224 a0005c0006t0001g0189 a0005c0006t0001g0209 a0005c0006t0001g0210 a0014c0014t0001g0196	21	228	0.0921	19	c.482 others(40): Show c.4822+13991_4822+14009dupAAAAAAAAAAAAAAAAAAA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ3_chr1_74021015_74203176	74087381	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0005 a0006c0006t0005	a0006c0006t0005g0270 a0006c0006t0005g0270	1	274	0.0037	19	c.868 others(38): Show c.868-12610_868-12592dupAAAAAAAAAAAAAAAAAAA	LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding	5/7			chr1	TogoVar
LRRIQ3_chr1_74021015_74203176	74154240	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18998.hp1 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0259 a0001c0001t0001g0259	1	274	0.0037	19	c.707 others(36): Show c.707+1474_707+1492dupTTTTTTTTTTTTTTTTTTT	LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding	4/7			chr1	TogoVar
LRRIQ4_chr3_169807870_169842773	169830377	G G	GAAAAAAA others(12): Show GAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0205 a0001c0001t0001g0205	1	386	0.0026	19	c.119 others(35): Show c.1195-101_1195-83dupAAAAAAAAAAAAAAAAAAA	LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRIQ4_chr3_169807870_169842773	169835364	C C	CTTGTGTG others(12): Show CTTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA19087.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0341 a0001c0001t0001g0341	1	386	0.0026	19	c.153 others(38): Show c.1531-2114_1531-2113insTGTGTGTGTGTGTGTGTGT	LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRK1_chr15_100914357_101083257	100956455	C C	CTTTTTCT others(12): Show CTTTTTCTTTTCTTTTCTTT	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01167.hp2 HG01943.hp2 others(7): Show HG01070.hp2 HG01167.hp2 HG01943.hp2 HG01975.hp2 HG02080.hp1 HG02293.hp2 HG02523.hp1 HG03516.hp1 NA18956.hp2 NA19057.hp1	a0001 a0002 a0025 a0001 a0002 a0025	a0001c0003 a0001c0017 a0001c0029 others(4): Show a0001c0003 a0001c0017 a0001c0029 a0001c0035 a0001c0090 a0002c0005 a0025c0111	a0001c0003t0004 a0001c0003t0060 a0001c0003t0075 others(6): Show a0001c0003t0004 a0001c0003t0060 a0001c0003t0075 a0001c0017t0255 a0001c0029t0234 a0001c0035t0039 a0001c0090t0068 a0002c0005t0109 a0025c0111t0077	a0001c0003t0004g0182 a0001c0003t0004g0210 a0001c0003t0060g0208 others(7): Show a0001c0003t0004g0182 a0001c0003t0004g0210 a0001c0003t0060g0208 a0001c0003t0075g0181 a0001c0017t0255g0326 a0001c0029t0234g0128 a0001c0035t0039g0211 a0001c0090t0068g0175 a0002c0005t0109g0099 a0025c0111t0077g0215	10	338	0.0296	19	c.98- others(36): Show c.98-17344_98-17343insCTTTTCTTTTCTTTTTTTT	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRK2_chr12_40219997_40374285	40242804	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01192.hp2 HG01928.hp2 others(16): Show HG01109.hp2 HG01192.hp2 HG01928.hp2 HG02135.hp1 HG02293.hp2 HG02602.hp1 HG02630.hp2 HG03139.hp1 HG03654.hp1 HG03942.hp2 HG04115.hp2 NA18906.hp2 NA18942.hp1 NA18953.hp1 NA18959.hp2 NA18987.hp2 NA19000.hp1 NA19030.hp2 NA19062.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0005 a0019 a0030	a0001c0005 a0002c0001 a0002c0009 others(5): Show a0001c0005 a0002c0001 a0002c0009 a0002c0038 a0003c0004 a0005c0007 a0019c0024 a0030c0067	a0001c0005t0002 a0002c0001t0001 a0002c0001t0018 others(6): Show a0001c0005t0002 a0002c0001t0001 a0002c0001t0018 a0002c0009t0001 a0002c0038t0001 a0003c0004t0004 a0005c0007t0002 a0019c0024t0001 a0030c0067t0003	a0001c0005t0002g0103 a0001c0005t0002g0104 a0002c0001t0001g0038 others(16): Show a0001c0005t0002g0103 a0001c0005t0002g0104 a0002c0001t0001g0038 a0002c0001t0001g0042 a0002c0001t0001g0074 a0002c0001t0001g0095 a0002c0001t0001g0113 a0002c0001t0001g0245 a0002c0001t0001g0363 a0002c0001t0018g0018 a0002c0009t0001g0015 a0002c0009t0001g0040 a0002c0009t0001g0041 a0002c0038t0001g0097 a0003c0004t0004g0296 a0005c0007t0002g0039 a0019c0024t0001g0121 a0019c0024t0001g0123 a0030c0067t0003g0030	19	382	0.0497	19	c.707 others(34): Show c.707-733_707-732insAAAAAAAAAAAAAAAAAAA	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	6/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40280621	T T	TTAAATAA others(12): Show TTAAATAAAATAAAATAAAA	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02698.hp2 HG03654.hp1 others(2): Show HG02683.hp1 HG02698.hp2 HG03654.hp1 NA18946.hp2 NA18966.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0018 a0002c0001t0001 a0002c0001t0018	a0002c0001t0001g0017 a0002c0001t0001g0019 a0002c0001t0001g0031 others(2): Show a0002c0001t0001g0017 a0002c0001t0001g0019 a0002c0001t0001g0031 a0002c0001t0001g0114 a0002c0001t0018g0018	5	382	0.0131	19	c.224 others(38): Show c.2241+2364_2241+2365insTAAAATAAAATAAAATAAA	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	18/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GATATATA others(12): Show GATATATATATATATTATAT	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0005 a0001c0004t0005	a0001c0004t0005g0337 a0001c0004t0005g0337	1	422	0.0024	19	c.-27 others(38): Show c.-278-9825_-278-9824insTATATATATATATATATAT	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN2_chr1_204612170_204690738	204631256	C C	CAATCTAA others(12): Show CAATCTAATATATATATATA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00673.hp1 HG01516.hp2 others(4): Show HG00621.hp2 HG00673.hp1 HG01516.hp2 HG01517.hp1 HG01952.hp1 HG02004.hp1 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0002t0004 a0001c0001t0001 a0001c0002t0002 a0001c0002t0004	a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0228 others(4): Show a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0228 a0001c0002t0002g0089 a0001c0002t0002g0163 a0001c0002t0002g0164 a0001c0002t0004g0188	7	328	0.0213	19	c.-22 others(40): Show c.-226-11039_-226-11038insTATATATATATATTAGATT	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRTM3_chr10_66921036_67106551	66996649	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02559.hp1 NA19030.hp1 HG02559.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0016 a0001c0001t0003 a0001c0001t0016	a0001c0001t0003g0268 a0001c0001t0016g0007 a0001c0001t0003g0268 a0001c0001t0016g0007	2	294	0.0068	19	c.153 others(40): Show c.1536+68201_1536+68219dupAAAAAAAAAAAAAAAAAAA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	67005682	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18999.hp1 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0187 a0001c0001t0002g0187	1	294	0.0034	19	c.153 others(40): Show c.1536+77233_1536+77251dupTTTTTTTTTTTTTTTTTTT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76913543	A A	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0111 a0001c0001t0002g0111	1	128	0.0078	19	c.155 others(42): Show c.1552-164628_1552-164627insAAAAAAAAAAAAAAAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77075914	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp1 NA19011.hp2 HG02145.hp1 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0007 a0001c0001t0002g0021 a0001c0001t0002g0007 a0001c0001t0002g0021	2	128	0.0156	19	c.155 others(42): Show c.1552-327017_1552-326999dupTTTTTTTTTTTTTTTTTTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77123244	A A	AGAGAGAG others(12): Show AGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0034 a0001c0001t0006g0034	1	128	0.0078	19	c.155 others(42): Show c.1552-374329_1552-374328insCTCTCTCTCTCTCTCTCTC	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77306897	A A	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG03490.hp2 HG02280.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0001 a0001c0001t0003g0047 a0001c0001t0001g0001 a0001c0001t0003g0047	2	128	0.0156	19	c.155 others(42): Show c.1551+211402_1551+211420dupAAAAAAAAAAAAAAAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LSAMP_chr3_115797374_116450487	115818790	T T	TATATATA others(12): Show TATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0100 a0001c0001t0048g0100	1	104	0.0096	19	c.920 others(36): Show c.920-8377_920-8376insTATATATATATATATATAT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	6/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115869269	G G	GAGAGAGA others(12): Show GAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG01978.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0014 a0001c0002t0014	a0001c0002t0014g0010 a0001c0002t0014g0010	1	104	0.0096	19	c.515 others(38): Show c.515-16653_515-16652insTCTCTCTCTCTCTCTCTCT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667923	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18965.hp2 NA18994.hp1 NA18965.hp2 NA18994.hp1	a0001 a0001	a0001c0003 a0001c0005 a0001c0003 a0001c0005	a0001c0003t0008 a0001c0005t0002 a0001c0003t0008 a0001c0005t0002	a0001c0003t0008g0211 a0001c0005t0002g0193 a0001c0003t0008g0211 a0001c0005t0002g0193	2	408	0.0049	19	c.227 others(36): Show c.227-1370_227-1352dupTTTTTTTTTTTTTTTTTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(12): Show AAAAAAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0013 a0001c0003t0013	a0001c0003t0013g0159 a0001c0003t0013g0159	1	408	0.0025	19	c.227 others(36): Show c.227-1371_227-1370insATTTTTTTTTTTTTTTTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(12): Show AAAAAAAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp1 HG02896.hp2 HG02897.hp1	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0023 a0001c0011t0023	a0001c0011t0023g0006 a0001c0011t0023g0006	2	408	0.0049	19	c.227 others(36): Show c.227-1371_227-1370insATATTTTTTTTTTTTTTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSM1_chr8_38158339_38181493	38180522	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0139 a0001c0001t0003g0139	1	402	0.0025	19	c.-42 others(30): Show c.-4221_-4203dupTTTTTTTTTTTTTTTTTTT	LSM1	ENSG00000175324.10	transcript	ENST00000311351.9	protein_coding		4030		chr8	TogoVar
LSM2_chr6_31792396_31811966	31809595	A A	ACACACAC others(12): Show ACACACACACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0139 a0001c0001t0001g0139	1	427	0.0023	19	c.-28 others(30): Show c.-2839_-2838insGTGTGTGTGTGTGTGTGTG	LSM2	ENSG00000204392.11	transcript	ENST00000375661.6	protein_coding		2630		chr6	TogoVar
LSP1_chr11_1848084_1897263	1849554	G G	GCGCCGCG others(12): Show GCGCCGCGCACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18946.hp2 NA18946.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0018 a0002c0001t0001g0018	1	360	0.0028	19	c.-35 others(30): Show c.-3591_-3590insCGCCGCGCACACACACACA	LSP1	ENSG00000130592.17	transcript	ENST00000311604.8	protein_coding		3529		chr11	TogoVar
LSP1_chr11_1848084_1897263	1849554	G G	GCGCGCAC others(12): Show GCGCGCACCACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19077.hp2 NA19077.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0110 a0001c0002t0001g0110	1	360	0.0028	19	c.-35 others(30): Show c.-3591_-3590insCGCGCACCACACACACACA	LSP1	ENSG00000130592.17	transcript	ENST00000311604.8	protein_coding		3529		chr11	TogoVar
LSR_chr19_35244002_35272964	35251843	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00558.hp2 HG00673.hp2 others(31): Show HG00140.hp1 HG00558.hp2 HG00673.hp2 HG00733.hp2 HG01261.hp2 HG01934.hp2 HG01943.hp2 HG01952.hp2 HG02004.hp2 HG02027.hp2 HG02071.hp1 HG02300.hp1 HG02615.hp1 HG04115.hp1 HG04228.hp1 NA18947.hp2 NA18950.hp2 NA18952.hp2 NA18972.hp1 NA18990.hp1 NA18992.hp1 NA18993.hp1 NA18998.hp2 NA18999.hp2 NA19001.hp2 NA19009.hp2 NA19054.hp2 NA19057.hp1 NA19058.hp2 NA19060.hp1 NA19064.hp2 NA19065.hp1 NA19068.hp1 NA19078.hp2	a0001 a0002 a0012 a0001 a0002 a0012	a0001c0004 a0002c0001 a0012c0009 a0001c0004 a0002c0001 a0012c0009	a0001c0004t0001 a0002c0001t0001 a0012c0009t0001 a0001c0004t0001 a0002c0001t0001 a0012c0009t0001	a0001c0004t0001g0002 a0001c0004t0001g0051 a0001c0004t0001g0170 others(5): Show a0001c0004t0001g0002 a0001c0004t0001g0051 a0001c0004t0001g0170 a0001c0004t0001g0172 a0001c0004t0001g0173 a0001c0004t0001g0174 a0002c0001t0001g0171 a0012c0009t0001g0180	34	438	0.0776	19	c.454 others(36): Show c.454+1193_454+1194insTTTTTTTTTTTTTTTTTTT	LSR	ENSG00000105699.17	transcript	ENST00000605618.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP1_chr2_32941953_33404509	32959621	A A	ATATTTTT others(12): Show ATATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0007 a0001c0001t0002g0007	1	164	0.0061	19	c.565 others(38): Show c.565+10677_565+10678insATTTTTTTTTTTTTTTTTT	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	2/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33004786	A A	ATATATAT others(12): Show ATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02602.hp2 HG00735.hp1 HG02602.hp2	a0001 a0010 a0001 a0010	a0001c0001 a0010c0036 a0001c0001 a0010c0036	a0001c0001t0005 a0010c0036t0002 a0001c0001t0005 a0010c0036t0002	a0001c0001t0005g0142 a0010c0036t0002g0118 a0001c0001t0005g0142 a0010c0036t0002g0118	2	164	0.0122	19	c.566 others(38): Show c.566-16123_566-16122insTATATATATATATATATAT	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	2/33			chr2	TogoVar

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