Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
OR2T34_chr1_248568801_248579757	248569909	T T	TAAAAAAA others(12): Show TAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02109.hp1 NA18990.hp2 HG02109.hp1 NA18990.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	314	0.0064	19	c.38 others(30): Show c.3891_*3892insTTTTTTTTTTTTTTTTTTT	OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding		3891		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248576101	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02027.hp1 NA18612.hp1 NA18956.hp2 others(13): Show HG02027.hp1 NA18612.hp1 NA18956.hp2 NA18959.hp2 NA18963.hp2 NA18969.hp2 NA18971.hp2 NA18977.hp1 NA18988.hp1 NA19056.hp1 NA19063.hp2 NA19074.hp1 NA19075.hp1 NA19084.hp2 NA19087.hp2 NA20905.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	16	314	0.0510	19	c.-13 others(30): Show c.-1345_-1344insTTTTTTTTTTTTTTTTTTT	OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding		1345		chr1	TogoVar
OR2T8_chr1_247915252_247928152	247927495	G G	GTGTGTGT others(12): Show GTGTGTGTGTGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03492.hp2 NA18942.hp2 HG03492.hp2 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0001 a0001c0006t0001 a0001c0001t0001 a0001c0006t0001	a0001c0001t0001g0001 a0001c0006t0001g0001 a0001c0001t0001g0001 a0001c0006t0001g0001	2	430	0.0047	19	c.55 others(30): Show c.5539_*5540insTGTGTGTGTGTGTGTGTGT	OR2T8	ENSG00000177462.9	transcript	ENST00000641945.2	protein_coding		4344		chr1	TogoVar
OR3A2_chr17_3271177_3391308	3367599	G G	GTATATAT others(12): Show GTATATATAATATATATATA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02622.hp1 HG03195.hp1 HG02055.hp1 HG02622.hp1 HG03195.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0011 a0005c0006t0011	a0005c0006t0011g0096 a0005c0006t0011g0097 a0005c0006t0011g0098 a0005c0006t0011g0096 a0005c0006t0011g0097 a0005c0006t0011g0098	3	318	0.0094	19	c.-37 others(40): Show c.-377+18525_-377+18526insTATATATATATTATATATA	OR3A2	ENSG00000221882.5	transcript	ENST00000573901.3	protein_coding	1/4			chr17	TogoVar
OR4A5_chr11_54701832_54712902	54704720	T T	TTTTCTTT others(12): Show TTTTCTTTTCTTTTCTTTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp2 HG01074.hp1 HG03491.hp1 others(2): Show HG00423.hp2 HG01074.hp1 HG03491.hp1 HG03492.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	5	466	0.0107	19	c.-21 others(30): Show c.-2165_-2164insTTTCTTTTCTTTTCTTTTC	OR4A5	ENSG00000221840.4	transcript	ENST00000319760.8	protein_coding		2111		chr11	TogoVar
OR4D10_chr11_59468315_59484361	59468672	A A	ATAGATAG others(12): Show ATAGATAGATGATAGATAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0008 a0001c0001t0004g0008	1	430	0.0023	19	c.-51 others(30): Show c.-5193_-5192insTAGATAGATGATAGATAGG	OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding		4642		chr11	TogoVar
OR4D6_chr11_59451961_59462905	59454033	A A	ACACACAC others(12): Show ACACACACACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0010 a0010	a0010c0011 a0010c0011	a0010c0011t0000 a0010c0011t0000	a0010c0011t0000g0000 a0010c0011t0000g0000	1	422	0.0024	19	c.-29 others(30): Show c.-2928_-2927insCACACACACACACACACAC	OR4D6	ENSG00000166884.3	transcript	ENST00000300127.3	protein_coding		2927		chr11	TogoVar
OR4K5_chr14_19915607_19926578	19924400	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0000 a0003c0003t0000	a0003c0003t0000g0000 a0003c0003t0000g0000	1	236	0.0042	19	c.28 others(30): Show c.2822_*2823insAAAAAAAAAAAAAAAAAAA	OR4K5	ENSG00000176281.5	transcript	ENST00000315915.5	protein_coding		2823		chr14	TogoVar
OR4M1_chr14_19768504_19788696	19787255	C C	CCTTCCTT others(12): Show CCTTCCTTCTTTCCTTTTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03239.hp2 NA18942.hp1 NA19065.hp2 others(2): Show HG03239.hp2 NA18942.hp1 NA19065.hp2 NA19082.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0007 a0001c0001t0004g0013 a0001c0001t0004g0023 others(1): Show a0001c0001t0004g0007 a0001c0001t0004g0013 a0001c0001t0004g0023 a0001c0001t0004g0107	5	276	0.0181	19	c.59 others(30): Show c.5991_*5992insCTTCCTTCTTTCCTTTTCT	OR4M1	ENSG00000176299.5	transcript	ENST00000641200.1	protein_coding		3560		chr14	TogoVar
OR51A4_chr11_4937831_4952605	4942089	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG01517.hp1 HG01943.hp2 others(12): Show HG00609.hp1 HG01517.hp1 HG01943.hp2 HG02630.hp1 HG02896.hp2 HG02897.hp1 HG02965.hp2 HG03017.hp1 HG03579.hp1 HG04228.hp1 NA18947.hp1 NA18948.hp1 NA18955.hp2 NA19001.hp2 NA19056.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0006 a0001c0001t0012 a0001c0001t0025 others(2): Show a0001c0001t0006 a0001c0001t0012 a0001c0001t0025 a0002c0002t0001 a0003c0003t0002	a0001c0001t0006g0006 a0001c0001t0012g0016 a0001c0001t0025g0053 others(2): Show a0001c0001t0006g0006 a0001c0001t0012g0016 a0001c0001t0025g0053 a0002c0002t0001g0001 a0003c0003t0002g0002	15	446	0.0336	19	c.40 others(30): Show c.4051_*4069dupTTTTTTTTTTTTTTTTTTT	OR51A4	ENSG00000205497.5	transcript	ENST00000641898.1	protein_coding		741		chr11	TogoVar
OR51A4_chr11_4937831_4952605	4942089	C C	CAAAAAAA others(12): Show CAAAAAAACAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0038 a0003c0003t0038	a0003c0003t0038g0050 a0003c0003t0038g0050	1	446	0.0022	19	c.40 others(30): Show c.4069_*4070insTTTTTTTTTTTGTTTTTTT	OR51A4	ENSG00000205497.5	transcript	ENST00000641898.1	protein_coding		741		chr11	TogoVar
OR51A7_chr11_4898783_4914462	4907095	T T	TAAAAAAA others(12): Show TAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG02015.hp1 HG02165.hp1 others(25): Show HG00423.hp2 HG02015.hp1 HG02165.hp1 HG02615.hp2 HG02717.hp1 HG02723.hp1 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG03225.hp1 HG03831.hp2 NA18941.hp2 NA18943.hp2 NA18951.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18979.hp2 NA18980.hp1 NA18989.hp1 NA18991.hp1 NA19004.hp2 NA19011.hp1 NA19043.hp1 NA19043.hp2 NA19057.hp2 NA19058.hp1 NA19076.hp2	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0002c0002 a0008c0008 a0001c0001 a0002c0002 a0008c0008	a0001c0001t0001 a0002c0002t0002 a0002c0002t0010 others(1): Show a0001c0001t0001 a0002c0002t0002 a0002c0002t0010 a0008c0008t0002	a0001c0001t0001g0014 a0001c0001t0001g0057 a0002c0002t0002g0008 others(3): Show a0001c0001t0001g0014 a0001c0001t0001g0057 a0002c0002t0002g0008 a0002c0002t0002g0028 a0002c0002t0010g0063 a0008c0008t0002g0008	28	452	0.0620	19	c.-31 others(34): Show c.-31-242_-31-224dupAAAAAAAAAAAAAAAAAAA	OR51A7	ENSG00000176895.9	transcript	ENST00000641490.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794390	T T	TCTCTCTC others(12): Show TCTCTCTCTCTCTCTCTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 NA18990.hp1 NA18990.hp2 HG02258.hp1 NA18990.hp1 NA18990.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0006 a0002c0002 a0003c0006	a0002c0002t0002 a0003c0006t0001 a0002c0002t0002 a0003c0006t0001	a0002c0002t0002g0002 a0003c0006t0001g0008 a0002c0002t0002g0002 a0003c0006t0001g0008	3	418	0.0072	19	c.-33 others(30): Show c.-3325_-3324insGAGAGAGAGAGAGAGAGAG	OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding		3126		chr11	TogoVar
OR52N2_chr11_5803924_5826483	5816545	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02965.hp2 NA18522.hp2 NA18906.hp2 others(2): Show HG02965.hp2 NA18522.hp2 NA18906.hp2 NA19240.hp2 NA20129.hp2	a0004 a0007 a0010 a0004 a0007 a0010	a0004c0005 a0007c0011 a0010c0009 a0004c0005 a0007c0011 a0010c0009	a0004c0005t0006 a0007c0011t0001 a0010c0009t0001 a0004c0005t0006 a0007c0011t0001 a0010c0009t0001	a0004c0005t0006g0029 a0004c0005t0006g0045 a0007c0011t0001g0044 others(1): Show a0004c0005t0006g0029 a0004c0005t0006g0045 a0007c0011t0001g0044 a0010c0009t0001g0042	5	402	0.0124	19	c.-54 others(36): Show c.-54-3735_-54-3734insTTTTTTTTTTTTTTTTTTT	OR52N2	ENSG00000180988.3	transcript	ENST00000317037.3	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr11	TogoVar
OR5A1_chr11_59431469_59456380	59454033	A A	ACACACAC others(12): Show ACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0004 a0004	a0004c0009 a0004c0009	a0004c0009t0023 a0004c0009t0023	a0004c0009t0023g0026 a0004c0009t0023g0026	1	408	0.0025	19	c.99 others(30): Show c.9917_*9918insCACACACACACACACACAC	OR5A1	ENSG00000172320.4	transcript	ENST00000641045.1	protein_coding		2654		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(12): Show TATATATATATATAATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18963.hp1 NA18963.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0002 a0001c0001t0045g0002	1	432	0.0023	19	c.82 others(30): Show c.8255_*8256insATATATATATATAATATAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5B3_chr11_58397464_58411874	58401530	G G	GAGATAGA others(12): Show GAGATAGATAGATAGATGAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0007 a0007	a0007c0010 a0007c0010	a0007c0010t0001 a0007c0010t0001	a0007c0010t0001g0049 a0007c0010t0001g0049	1	386	0.0026	19	c.93 others(28): Show c.934_*935insATCATCTATCTATCTATCT	OR5B3	ENSG00000172769.4	transcript	ENST00000641865.1	protein_coding		933		chr11	TogoVar
OR5C1_chr9_122783933_122794895	122786935	A A	AAAAAAAA others(12): Show AAAAAAAAATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	442	0.0023	19	c.-19 others(30): Show c.-1998_-1997insAAAAAAAATATATATATAT	OR5C1	ENSG00000148215.4	transcript	ENST00000373680.3	protein_coding		1997		chr9	TogoVar
OR5H6_chr3_98259244_98270356	98269427	C C	CTGCTTTT others(12): Show CTGCTTTTAGGATCCTTTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	1	442	0.0023	19	c.41 others(30): Show c.4165_*4166insTGCTTTTAGGATCCTTTCT	OR5H6	ENSG00000230301.6	transcript	ENST00000615035.3	protein_coding		4072		chr3	TogoVar
OR5T3_chr11_56247254_56258222	56255816	A A	ACACACAC others(12): Show ACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01943.hp1 HG01943.hp2 HG01943.hp1 HG01943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	371	0.0054	19	c.25 others(30): Show c.2594_*2595insCACACACACACACACACAC	OR5T3	ENSG00000172489.7	transcript	ENST00000313033.4	protein_coding		2595		chr11	TogoVar
OR6A2_chr11_6786736_6804689	6799515	G G	GGAATCAG others(12): Show GGAATCAGCAGATAACAGAA	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0074 a0001c0003t0003g0074	1	460	0.0022	19	c.-17 others(34): Show c.-177+10_-177+28dupTTCTGTTATCTGCTGATTC	OR6A2	ENSG00000184933.6	transcript	ENST00000641196.1	protein_coding	1/1			chr11	TogoVar
OR6B3_chr2_240039571_240058521	240055230	T T	TGGTGAGG others(12): Show TGGTGAGGACCATGGTGAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0003 a0004c0003t0003	a0004c0003t0003g0077 a0004c0003t0003g0077	1	444	0.0023	19	c.-19 others(30): Show c.-1906_-1905insCCTCACCATGGTCCTCACC	OR6B3	ENSG00000178586.7	transcript	ENST00000641019.2	protein_coding		1710		chr2	TogoVar
OR6J1_chr14_22625929_22649352	22636223	G G	GCTCCCCT others(12): Show GCTCCCCTCTCCCTCTCCCT	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0013 a0002c0002t0013	a0002c0002t0013g0266 a0002c0002t0013g0266	1	362	0.0028	19	c.-27 others(36): Show c.-27-1386_-27-1385insAGGGAGAGGGAGAGGGGAG	OR6J1	ENSG00000255804.2	transcript	ENST00000540461.2	protein_coding	1/1			chr14	TogoVar
OR6J1_chr14_22625929_22649352	22636297	T T	TCCCTCTC others(12): Show TCCCTCTCCCTCTCCCTCTC	intron_variant intron_variant	MODIFIER	HG02300.hp2 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0161 a0001c0001t0001g0161	1	362	0.0028	19	c.-27 others(36): Show c.-27-1478_-27-1460dupGAGAGGGAGAGGGAGAGGG	OR6J1	ENSG00000255804.2	transcript	ENST00000540461.2	protein_coding	1/1			chr14	TogoVar
OR6J1_chr14_22625929_22649352	22636351	T T	TCCCTCTC others(12): Show TCCCTCTCCCTCTCCCTCTC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0032 a0002c0002t0032	a0002c0002t0032g0240 a0002c0002t0032g0240	1	362	0.0028	19	c.-27 others(36): Show c.-27-1532_-27-1514dupGAGAGGGAGAGGGAGAGGG	OR6J1	ENSG00000255804.2	transcript	ENST00000540461.2	protein_coding	1/1			chr14	TogoVar
OR6S1_chr14_20635696_20646691	20640643	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	470	0.0021	19	c.52 others(26): Show c.52_*53insTTTTTTTTTTTTTTTTTTT	OR6S1	ENSG00000181803.3	transcript	ENST00000320704.3	protein_coding		52		chr14	TogoVar
OR6Y1_chr1_158539550_158559405	158542334	A A	ATATATAT others(12): Show ATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03516.hp2 NA20300.hp1 HG03516.hp2 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0007 a0003c0003t0005 a0001c0001t0007 a0003c0003t0005	a0001c0001t0007g0006 a0003c0003t0005g0014 a0001c0001t0007g0006 a0003c0003t0005g0014	2	430	0.0047	19	c.47 others(30): Show c.4793_*4794insATATATATATATATATATA	OR6Y1	ENSG00000197532.3	transcript	ENST00000641622.1	protein_coding		2215		chr1	TogoVar
OR6Y1_chr1_158539550_158559405	158542334	A A	ATATATAT others(12): Show ATATATATATATATTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0014 a0006c0005t0014	a0006c0005t0014g0013 a0006c0005t0014g0013	1	430	0.0023	19	c.47 others(30): Show c.4793_*4794insAAAAAAATATATATATATA	OR6Y1	ENSG00000197532.3	transcript	ENST00000641622.1	protein_coding		2215		chr1	TogoVar
OR6Y1_chr1_158539550_158559405	158542334	A A	ATATATAT others(12): Show ATATATATTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0043 a0001c0001t0044g0043	1	430	0.0023	19	c.47 others(30): Show c.4793_*4794insAAAAAAAAAAAAATATATA	OR6Y1	ENSG00000197532.3	transcript	ENST00000641622.1	protein_coding		2215		chr1	TogoVar
OR6Y1_chr1_158539550_158559405	158542334	A A	ATATATTT others(12): Show ATATATTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0043 a0001c0001t0043	a0001c0001t0043g0061 a0001c0001t0043g0061	1	430	0.0023	19	c.47 others(30): Show c.4793_*4794insAAAAAAAAAAAAAAATATA	OR6Y1	ENSG00000197532.3	transcript	ENST00000641622.1	protein_coding		2215		chr1	TogoVar
OR6Y1_chr1_158539550_158559405	158542335	T T	TATATATA others(12): Show TATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	430	0.0023	19	c.47 others(30): Show c.4792_*4793insTATATATATATATATATAT	OR6Y1	ENSG00000197532.3	transcript	ENST00000641622.1	protein_coding		2214		chr1	TogoVar
OR7A10_chr19_14835466_14853922	14844664	G G	GTTTTTTT others(12): Show GTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19082.hp1 NA19240.hp1 NA19082.hp1 NA19240.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0004c0006 a0001c0002 a0004c0006	a0001c0002t0003 a0004c0006t0004 a0001c0002t0003 a0004c0006t0004	a0001c0002t0003g0174 a0004c0006t0004g0148 a0001c0002t0003g0174 a0004c0006t0004g0148	2	488	0.0041	19	c.-12 others(36): Show c.-12-2776_-12-2775insAAAAAAAAAAAAAAAAAAA	OR7A10	ENSG00000127515.3	transcript	ENST00000641129.1	protein_coding	1/1			chr19	TogoVar
OR7D2_chr19_9173979_9193818	9183955	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG02027.hp2 HG01257.hp2 HG02027.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0089 a0001c0001t0003g0111 a0001c0001t0003g0089 a0001c0001t0003g0111	2	398	0.0050	19	c.-13 others(36): Show c.-13-1794_-13-1776dupAAAAAAAAAAAAAAAAAAA	OR7D2	ENSG00000188000.6	transcript	ENST00000641288.2	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr19	TogoVar
OR7G1_chr19_9109828_9120763	9111286	T T	TTTCTTTC others(12): Show TTTCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18963.hp1 NA18981.hp1 NA18963.hp1 NA18981.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	410	0.0049	19	c.35 others(30): Show c.3541_*3542insGAAAGAAAGAAAGAAAGAA	OR7G1	ENSG00000161807.3	transcript	ENST00000541538.1	protein_coding		3541		chr19	TogoVar
OR7G2_chr19_9095407_9112475	9111286	T T	TTTCTTTC others(12): Show TTTCTTTCTTTCTTTCTTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18963.hp2 NA18963.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	442	0.0023	19	c.-39 others(30): Show c.-3990_-3989insGAAAGAAAGAAAGAAAGAA	OR7G2	ENSG00000170923.4	transcript	ENST00000641081.1	protein_coding		3812		chr19	TogoVar
OR8S1_chr12_48520632_48531570	48525030	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG01168.hp1 HG01175.hp2 others(26): Show HG00741.hp1 HG01168.hp1 HG01175.hp2 HG01884.hp2 HG01993.hp1 HG02074.hp1 HG02886.hp1 HG03239.hp2 NA18943.hp2 NA18957.hp2 NA18961.hp1 NA18965.hp1 NA18968.hp2 NA18972.hp2 NA18980.hp1 NA18992.hp2 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18999.hp2 NA19005.hp1 NA19009.hp2 NA19058.hp2 NA19060.hp2 NA19063.hp1 NA19064.hp1 NA19078.hp1 NA19090.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0000 a0003c0003t0000 a0001c0001t0000 a0003c0003t0000	a0001c0001t0000g0000 a0003c0003t0000g0000 a0001c0001t0000g0000 a0003c0003t0000g0000	29	444	0.0653	19	c.-60 others(28): Show c.-602_-601insTTTTTTTTTTTTTTTTTTT	OR8S1	ENSG00000284723.2	transcript	ENST00000641651.1	protein_coding		601		chr12	TogoVar
OR9Q1_chr11_58018881_58186616	58048679	A A	AAAAATAT others(12): Show AAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0234 a0001c0001t0001g0234	1	324	0.0031	19	c.-92 others(36): Show c.-92-7190_-92-7189insAAATATATATATATATATA	OR9Q1	ENSG00000186509.4	transcript	ENST00000335397.3	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr11	TogoVar
OR9Q2_chr11_58184070_58199053	58196506	T T	TATATATA others(12): Show TATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18968.hp1 NA18968.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	418	0.0024	19	c.50 others(30): Show c.5071_*5072insATATATATATATATATATA	OR9Q2	ENSG00000186513.4	transcript	ENST00000641291.1	protein_coding		2454		chr11	TogoVar
ORAI2_chr7_102428575_102461825	102431117	T T	TGTGTGTG others(12): Show TGTGTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0037 a0001c0001t0037	a0001c0001t0037g0211 a0001c0001t0037g0211	1	404	0.0025	19	c.-26 others(30): Show c.-2667_-2666insGTGTGTGTGTGTGTGTGTG	ORAI2	ENSG00000160991.17	transcript	ENST00000495936.7	protein_coding		2457		chr7	TogoVar
ORC3_chr6_87585135_87672451	87644079	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02622.hp2 HG02257.hp1 HG02622.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0001 a0001c0001t0001 a0003c0004t0001	a0001c0001t0001g0148 a0003c0004t0001g0146 a0001c0001t0001g0148 a0003c0004t0001g0146	2	378	0.0053	19	c.138 others(38): Show c.1382+7606_1382+7624dupTTTTTTTTTTTTTTTTTTT	ORC3	ENSG00000135336.16	transcript	ENST00000392844.8	protein_coding	13/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ORM1_chr9_114318098_114331479	114318938	T T	TTAGATAG others(12): Show TTAGATAGATGATAGATAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18939.hp1 NA18970.hp1 NA18981.hp2 others(4): Show NA18939.hp1 NA18970.hp1 NA18981.hp2 NA18984.hp1 NA19065.hp2 NA19066.hp1 NA19072.hp2	a0000 a0001 a0008 a0000 a0001 a0008	a0000c0000 a0001c0001 a0008c0010 a0000c0000 a0001c0001 a0008c0010	a0000c0000t0000 a0001c0001t0001 a0008c0010t0001 a0000c0000t0000 a0001c0001t0001 a0008c0010t0001	a0000c0000t0000g0000 a0001c0001t0001g0002 a0008c0010t0001g0002 a0000c0000t0000g0000 a0001c0001t0001g0002 a0008c0010t0001g0002	7	464	0.0151	19	c.-41 others(30): Show c.-4196_-4195insTAGATAGATGATAGATAGA	ORM1	ENSG00000229314.6	transcript	ENST00000259396.9	protein_coding		4159		chr9	TogoVar
OS9_chr12_57689132_57726557	57697862	A A	ACACACAC others(12): Show ACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0159 a0001c0001t0001g0159	1	352	0.0028	19	c.579 others(36): Show c.579+1489_579+1490insCACACACACACACACACAC	OS9	ENSG00000135506.17	transcript	ENST00000315970.12	protein_coding	5/14			chr12	TogoVar
OSBP2_chr22_30689874_30912813	30895465	T T	TTTTAGTC others(12): Show TTTTAGTCAAGGATAAAGAA	intron_variant intron_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0168 a0001c0002t0002g0168	1	268	0.0037	19	c.237 others(38): Show c.2375+1467_2375+1485dupTAGTCAAGGATAAAGAATT	OSBP2	ENSG00000184792.16	transcript	ENST00000332585.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr22	TogoVar
OSBPL10_chr3_31655825_31986262	31762630	A A	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01123.hp1 HG01167.hp1 others(7): Show HG01074.hp1 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01243.hp1 HG01258.hp1 HG01346.hp1 HG01981.hp2 HG03130.hp2 HG06807.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0001c0002 a0003c0015 others(1): Show a0001c0001 a0001c0002 a0003c0015 a0005c0032	a0001c0001t0001 a0001c0002t0001 a0003c0015t0002 others(1): Show a0001c0001t0001 a0001c0002t0001 a0003c0015t0002 a0005c0032t0001	a0001c0001t0001g0024 a0001c0001t0001g0053 a0001c0001t0001g0071 others(7): Show a0001c0001t0001g0024 a0001c0001t0001g0053 a0001c0001t0001g0071 a0001c0001t0001g0141 a0001c0001t0001g0155 a0001c0002t0001g0059 a0001c0002t0001g0121 a0001c0002t0001g0122 a0003c0015t0002g0009 a0005c0032t0001g0096	10	186	0.0538	19	c.730 others(38): Show c.730-14529_730-14511dupAAAAAAAAAAAAAAAAAAA	OSBPL10	ENSG00000144645.16	transcript	ENST00000396556.7	protein_coding	4/11			chr3	TogoVar
OSBPL10_chr3_31655825_31986262	31809869	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02723.hp2 HG02976.hp1 others(3): Show HG02559.hp1 HG02723.hp2 HG02976.hp1 HG03209.hp1 NA19030.hp1 NA19043.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0008 a0001c0001 a0003c0008	a0001c0001t0001 a0001c0001t0002 a0003c0008t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0003c0008t0001 a0003c0008t0002	a0001c0001t0001g0019 a0001c0001t0001g0076 a0001c0001t0001g0088 others(3): Show a0001c0001t0001g0019 a0001c0001t0001g0076 a0001c0001t0001g0088 a0001c0001t0002g0020 a0003c0008t0001g0001 a0003c0008t0002g0005	6	186	0.0323	19	c.729 others(38): Show c.729+20152_729+20170dupAAAAAAAAAAAAAAAAAAA	OSBPL10	ENSG00000144645.16	transcript	ENST00000396556.7	protein_coding	4/11			chr3	TogoVar
OSBPL10_chr3_31655825_31986262	31905345	A A	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01123.hp1 HG01346.hp1 others(3): Show HG00597.hp1 HG01123.hp1 HG01346.hp1 HG02015.hp2 HG02109.hp2 HG02559.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0005 others(1): Show a0001c0001 a0001c0002 a0002c0005 a0002c0012	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0002c0005t0002 a0002c0012t0003	a0001c0001t0001g0053 a0001c0001t0001g0076 a0001c0001t0002g0140 others(3): Show a0001c0001t0001g0053 a0001c0001t0001g0076 a0001c0001t0002g0140 a0001c0002t0001g0122 a0002c0005t0002g0050 a0002c0012t0003g0178	6	186	0.0323	19	c.282 others(38): Show c.282-25534_282-25516dupAAAAAAAAAAAAAAAAAAA	OSBPL10	ENSG00000144645.16	transcript	ENST00000396556.7	protein_coding	1/11			chr3	TogoVar
OSBPL1A_chr18_24157052_24402824	24225732	T T	TGGGAGGA others(12): Show TGGGAGGACTGATTGAGGAC	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0195 a0001c0001t0001g0195	1	206	0.0049	19	c.144 others(36): Show c.1445-553_1445-535dupGTCCTCAATCAGTCCTCCC	OSBPL1A	ENSG00000141447.19	transcript	ENST00000319481.8	protein_coding	16/27			chr18	TogoVar
OSBPL1A_chr18_24157052_24402824	24323539	C C	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01109.hp2 HG01243.hp1 others(11): Show HG00673.hp1 HG01109.hp2 HG01243.hp1 HG01981.hp2 HG02109.hp2 HG02622.hp1 HG02717.hp1 HG02896.hp2 HG02922.hp2 HG03516.hp2 NA18977.hp1 NA19043.hp1 NA19091.hp2 NA19240.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0011 a0004c0006 a0001c0001 a0001c0011 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0011t0001 a0004c0006t0001	a0001c0001t0001g0005 a0001c0001t0001g0044 a0001c0001t0001g0065 others(11): Show a0001c0001t0001g0005 a0001c0001t0001g0044 a0001c0001t0001g0065 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0144 a0001c0001t0001g0181 a0001c0001t0002g0139 a0001c0001t0004g0053 a0001c0001t0004g0178 a0001c0001t0004g0179 a0001c0001t0007g0006 a0001c0011t0001g0029 a0004c0006t0001g0151	14	206	0.0680	19	c.626 others(36): Show c.626-4749_626-4731dupAAAAAAAAAAAAAAAAAAA	OSBPL1A	ENSG00000141447.19	transcript	ENST00000319481.8	protein_coding	7/27			chr18	TogoVar
OSBPL1A_chr18_24157052_24402824	24323547	T T	TTTTTTTT others(12): Show TTTTTTTTTTTTTTTTTTTC	intron_variant intron_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0168 a0001c0003t0004g0168	1	206	0.0049	19	c.626 others(36): Show c.626-4739_626-4738insGAAAAAAAAAAAAAAAAAA	OSBPL1A	ENSG00000141447.19	transcript	ENST00000319481.8	protein_coding	7/27			chr18	TogoVar
OSBPL1A_chr18_24157052_24402824	24351347	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0136	1	206	0.0049	19	c.283 others(36): Show c.283-9708_283-9690dupTTTTTTTTTTTTTTTTTTT	OSBPL1A	ENSG00000141447.19	transcript	ENST00000319481.8	protein_coding	4/27			chr18	TogoVar

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