Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNST_chr1_246561456_246673595	246634951	T T	TGGTGGGT others(13): Show TGGTGGGTGTCTTCCGGCCGG	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp2 HG00408.hp1 others(111): Show HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00558.hp1 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01070.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01109.hp2 HG01175.hp1 HG01192.hp2 HG01257.hp1 HG01261.hp1 HG01433.hp1 HG01884.hp1 HG01934.hp1 HG01943.hp2 HG01952.hp1 HG01993.hp1 HG02015.hp1 HG02040.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp2 HG02083.hp2 HG02109.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp2 HG02300.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02698.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp2 HG03017.hp2 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03471.hp1 HG03491.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG06807.hp2 NA18612.hp1 NA18906.hp1 NA18942.hp2 NA18943.hp2 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18948.hp1 NA18950.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18960.hp1 NA18964.hp1 NA18966.hp2 NA18969.hp1 NA18971.hp1 NA18978.hp1 NA18979.hp1 NA18983.hp1 NA18985.hp1 NA18999.hp1 NA19005.hp2 NA19007.hp2 NA19009.hp2 NA19011.hp1 NA19030.hp1 NA19070.hp2 NA19079.hp2 NA19085.hp1 NA19087.hp2 NA19089.hp1 NA19090.hp2 NA19240.hp1 NA20300.hp2 NA20905.hp2 NA21309.hp2	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0001c0009 a0001c0012 others(2): Show a0001c0001 a0001c0009 a0001c0012 a0002c0002 a0006c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0011 a0001c0001t0013 a0001c0001t0018 a0001c0001t0024 a0001c0001t0025 a0001c0009t0001 a0001c0012t0002 a0002c0002t0002 a0006c0007t0003	a0001c0001t0001g0022 a0001c0001t0001g0156 a0001c0001t0001g0160 others(111): Show a0001c0001t0001g0022 a0001c0001t0001g0156 a0001c0001t0001g0160 a0001c0001t0001g0166 a0001c0001t0001g0194 a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0001g0202 a0001c0001t0001g0207 a0001c0001t0001g0210 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0219 a0001c0001t0001g0228 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0257 a0001c0001t0001g0260 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0277 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0283 a0001c0001t0001g0289 a0001c0001t0001g0291 a0001c0001t0001g0293 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0298 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0001t0001g0303 a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0307 a0001c0001t0001g0308 a0001c0001t0001g0309 a0001c0001t0001g0314 a0001c0001t0001g0318 a0001c0001t0002g0005 a0001c0001t0002g0129 a0001c0001t0002g0131 a0001c0001t0002g0195 a0001c0001t0002g0201 a0001c0001t0002g0209 a0001c0001t0002g0214 a0001c0001t0002g0218 a0001c0001t0002g0223 a0001c0001t0002g0224 a0001c0001t0002g0225 a0001c0001t0002g0231 a0001c0001t0002g0232 a0001c0001t0002g0233 a0001c0001t0002g0235 a0001c0001t0002g0238 a0001c0001t0002g0239 a0001c0001t0002g0243 a0001c0001t0002g0244 a0001c0001t0002g0245 a0001c0001t0002g0247 a0001c0001t0002g0252 a0001c0001t0002g0258 a0001c0001t0002g0262 a0001c0001t0002g0276 a0001c0001t0002g0281 a0001c0001t0002g0284 a0001c0001t0002g0285 a0001c0001t0002g0302 a0001c0001t0002g0310 a0001c0001t0002g0315 a0001c0001t0003g0206 a0001c0001t0003g0220 a0001c0001t0003g0222 a0001c0001t0003g0259 a0001c0001t0003g0294 a0001c0001t0003g0297 a0001c0001t0004g0157 a0001c0001t0004g0158 a0001c0001t0004g0159 a0001c0001t0005g0155 a0001c0001t0005g0203 a0001c0001t0005g0204 a0001c0001t0005g0205 a0001c0001t0008g0020 a0001c0001t0008g0176 a0001c0001t0011g0208 a0001c0001t0011g0212 a0001c0001t0011g0221 a0001c0001t0013g0196 a0001c0001t0018g0256 a0001c0001t0024g0269 a0001c0001t0025g0288 a0001c0009t0001g0191 a0001c0012t0002g0278 a0002c0002t0002g0251 a0006c0007t0003g0267	114	320	0.3563	20	c.818 others(35): Show c.818+368_818+369insGGTGTCTTCCGGCCGGGGTG	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246634951	T T	TGGTGTGT others(13): Show TGGTGTGTGTCTTCCGGCCGG	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0010 a0010	a0010c0008 a0010c0008	a0010c0008t0001 a0010c0008t0001	a0010c0008t0001g0161 a0010c0008t0001g0161	1	320	0.0031	20	c.818 others(35): Show c.818+368_818+369insTGTGTCTTCCGGCCGGGGTG	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246634956	C C	CGTGTCTT others(13): Show CGTGTCTTCCGGCCGGGGTAG	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00423.hp1 others(126): Show HG00140.hp2 HG00280.hp1 HG00423.hp1 HG00423.hp2 HG00558.hp2 HG00642.hp2 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG01069.hp2 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp2 HG01099.hp2 HG01169.hp1 HG01169.hp2 HG01192.hp1 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp2 HG01891.hp1 HG01934.hp2 HG01943.hp1 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02004.hp2 HG02071.hp1 HG02074.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp2 HG02145.hp2 HG02148.hp1 HG02258.hp1 HG02273.hp1 HG02293.hp1 HG02293.hp2 HG02300.hp2 HG02451.hp2 HG02602.hp2 HG02615.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02698.hp2 HG02717.hp1 HG02723.hp2 HG02735.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03471.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03942.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp1 HG04228.hp2 NA18522.hp1 NA18747.hp1 NA18942.hp1 NA18943.hp1 NA18950.hp2 NA18954.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp2 NA18969.hp2 NA18971.hp2 NA18983.hp2 NA18985.hp2 NA18993.hp1 NA18993.hp2 NA18999.hp2 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19043.hp1 NA19079.hp1 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19089.hp2 NA19090.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20805.hp1 NA20805.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0007	a0001c0001 a0003c0003 a0004c0004 others(1): Show a0001c0001 a0003c0003 a0004c0004 a0007c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0003c0003t0004 a0004c0004t0003 a0004c0004t0021 a0007c0005t0023	a0001c0001t0001g0011 a0001c0001t0001g0025 a0001c0001t0001g0052 others(124): Show a0001c0001t0001g0011 a0001c0001t0001g0025 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0076 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0089 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0121 a0001c0001t0001g0132 a0001c0001t0001g0167 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0177 a0001c0001t0001g0182 a0001c0001t0001g0290 a0001c0001t0001g0304 a0001c0001t0001g0312 a0001c0001t0002g0002 a0001c0001t0002g0045 a0001c0001t0002g0049 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0058 a0001c0001t0002g0064 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0078 a0001c0001t0002g0080 a0001c0001t0002g0083 a0001c0001t0002g0097 a0001c0001t0002g0101 a0001c0001t0002g0102 a0001c0001t0002g0103 a0001c0001t0002g0105 a0001c0001t0002g0107 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0183 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0311 a0001c0001t0002g0313 a0001c0001t0003g0003 a0001c0001t0003g0046 a0001c0001t0003g0047 a0001c0001t0003g0048 a0001c0001t0003g0050 a0001c0001t0003g0051 a0001c0001t0003g0054 a0001c0001t0003g0055 a0001c0001t0003g0063 a0001c0001t0003g0065 a0001c0001t0003g0066 a0001c0001t0003g0067 a0001c0001t0003g0068 a0001c0001t0003g0069 a0001c0001t0003g0070 a0001c0001t0003g0073 a0001c0001t0003g0074 a0001c0001t0003g0075 a0001c0001t0003g0079 a0001c0001t0003g0081 a0001c0001t0003g0082 a0001c0001t0003g0084 a0001c0001t0003g0092 a0001c0001t0003g0096 a0001c0001t0003g0104 a0001c0001t0003g0109 a0001c0001t0003g0137 a0001c0001t0003g0144 a0001c0001t0003g0163 a0001c0001t0003g0181 a0001c0001t0003g0199 a0001c0001t0003g0211 a0001c0001t0003g0226 a0001c0001t0003g0227 a0001c0001t0003g0250 a0001c0001t0003g0261 a0001c0001t0003g0270 a0001c0001t0003g0282 a0001c0001t0003g0292 a0001c0001t0003g0316 a0001c0001t0003g0317 a0001c0001t0004g0004 a0001c0001t0004g0006 a0001c0001t0004g0007 a0001c0001t0004g0014 a0001c0001t0004g0015 a0001c0001t0004g0017 a0001c0001t0004g0018 a0001c0001t0004g0019 a0001c0001t0004g0026 a0001c0001t0004g0173 a0001c0001t0005g0023 a0001c0001t0007g0062 a0001c0001t0008g0021 a0001c0001t0009g0010 a0001c0001t0009g0012 a0001c0001t0009g0013 a0001c0001t0010g0229 a0001c0001t0010g0230 a0001c0001t0010g0286 a0001c0001t0012g0001 a0001c0001t0014g0164 a0001c0001t0014g0165 a0001c0001t0017g0008 a0001c0001t0019g0106 a0001c0001t0020g0024 a0003c0003t0004g0162 a0004c0004t0003g0119 a0004c0004t0003g0184 a0004c0004t0003g0185 a0004c0004t0003g0192 a0004c0004t0003g0193 a0004c0004t0021g0152 a0007c0005t0023g0043	129	320	0.4031	20	c.818 others(35): Show c.818+387_818+388insAGGTGTCTTCCGGCCGGGGT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246634956	C C	CGTGTCTT others(13): Show CGTGTCTTCTGGCCGGGGTAG	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0009 a0001c0006t0001g0009	1	320	0.0031	20	c.818 others(35): Show c.818+377_818+378insTGGCCGGGGTAGGTGTCTTC	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246634969	C C	CGGGGTAG others(13): Show CGGGGTAGGTGTCTTCCGGCT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00733.hp1 HG01243.hp1 others(30): Show HG00140.hp1 HG00733.hp1 HG01243.hp1 HG01243.hp2 HG01517.hp1 HG01884.hp2 HG01891.hp2 HG02109.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02717.hp2 HG02723.hp1 HG02896.hp1 HG02897.hp1 HG03098.hp1 HG03130.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03540.hp2 HG03579.hp2 HG03688.hp2 HG03834.hp2 NA18522.hp2 NA19030.hp2 NA20129.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0008	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0008c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0016 a0001c0001t0022 a0002c0002t0006 a0002c0002t0015 a0003c0003t0001 a0003c0003t0004 a0008c0011t0015	a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0091 others(30): Show a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0128 a0001c0001t0001g0135 a0001c0001t0001g0287 a0001c0001t0002g0077 a0001c0001t0004g0016 a0001c0001t0004g0042 a0001c0001t0004g0100 a0001c0001t0004g0134 a0001c0001t0004g0150 a0001c0001t0004g0153 a0001c0001t0004g0154 a0001c0001t0004g0174 a0001c0001t0004g0275 a0001c0001t0016g0136 a0001c0001t0022g0085 a0002c0002t0006g0029 a0002c0002t0006g0031 a0002c0002t0015g0168 a0003c0003t0001g0032 a0003c0003t0001g0033 a0003c0003t0001g0037 a0003c0003t0001g0038 a0003c0003t0001g0039 a0003c0003t0001g0040 a0003c0003t0001g0041 a0003c0003t0001g0044 a0003c0003t0004g0034 a0003c0003t0004g0035 a0003c0003t0004g0036 a0008c0011t0015g0213	33	320	0.1031	20	c.818 others(35): Show c.818+387_818+388insAGGTGTCTTCCGGCTGGGGT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTFR_chr9_34546433_34594724	34555963	C C	CCCCGCCA others(13): Show CCCCGCCATCTCCCTCCCTCA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03516.hp2 HG03579.hp2 HG01891.hp2 HG03516.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0071 a0001c0001t0001g0139 a0001c0001t0009g0256 a0001c0001t0001g0071 a0001c0001t0001g0139 a0001c0001t0009g0256	3	402	0.0075	20	c.768 others(35): Show c.768+272_768+291dupTGAGGGAGGGAGATGGCGGG	CNTFR	ENSG00000122756.15	transcript	ENST00000378980.8	protein_coding	7/9			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17185771	T T	TTGTGTGT others(13): Show TTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA19068.hp1 NA18951.hp1 NA19068.hp1	a0005 a0015 a0005 a0015	a0005c0005 a0015c0035 a0005c0005 a0015c0035	a0005c0005t0001 a0015c0035t0001 a0005c0005t0001 a0015c0035t0001	a0005c0005t0001g0092 a0015c0035t0001g0088 a0005c0005t0001g0092 a0015c0035t0001g0088	2	218	0.0092	20	c.450 others(39): Show c.450-40420_450-40401dupGTGTGTGTGTGTGTGTGTGT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17202646	G G	GTTTTTTT others(13): Show GTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 NA19011.hp2 HG02145.hp2 NA19011.hp2	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0001 a0004c0003t0002 a0004c0003t0001 a0004c0003t0002	a0004c0003t0001g0069 a0004c0003t0002g0064 a0004c0003t0001g0069 a0004c0003t0002g0064	2	218	0.0092	20	c.450 others(39): Show c.450-23552_450-23533dupTTTTTTTTTTTTTTTTTTTT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17294785	A A	AGGGAGGG others(13): Show AGGGAGGGGGGGGAGGGTGGG	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA18951.hp1	a0015 a0015	a0015c0035 a0015c0035	a0015c0035t0001 a0015c0035t0001	a0015c0035t0001g0088 a0015c0035t0001g0088	1	218	0.0046	20	c.984 others(37): Show c.984-3394_984-3393insGAGGGTGGGGGGAGGGGGGG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312364	T T	TATATATA others(13): Show TATATATATTATATATATATA	intron_variant intron_variant	MODIFIER	NA18984.hp2 NA18984.hp2	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0001 a0003c0002t0001	a0003c0002t0001g0140 a0003c0002t0001g0140	1	218	0.0046	20	c.134 others(39): Show c.1341+3112_1341+3113insATATATATTATATATATATA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312364	T T	TATATATT others(13): Show TATATATTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02970.hp1 HG03453.hp1 HG01243.hp1 HG02970.hp1 HG03453.hp1	a0003 a0020 a0003 a0020	a0003c0002 a0020c0041 a0003c0002 a0020c0041	a0003c0002t0002 a0020c0041t0002 a0003c0002t0002 a0020c0041t0002	a0003c0002t0002g0148 a0003c0002t0002g0181 a0020c0041t0002g0147 a0003c0002t0002g0148 a0003c0002t0002g0181 a0020c0041t0002g0147	3	218	0.0138	20	c.134 others(39): Show c.1341+3112_1341+3113insATATATTATATATATATATA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312364	T T	TATATTAT others(13): Show TATATTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0016 a0016	a0016c0039 a0016c0039	a0016c0039t0001 a0016c0039t0001	a0016c0039t0001g0151 a0016c0039t0001g0151	1	218	0.0046	20	c.134 others(39): Show c.1341+3112_1341+3113insATATTATATATATATATATA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312364	T T	TATTTTAT others(13): Show TATTTTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0031 a0001c0031	a0001c0031t0002 a0001c0031t0002	a0001c0031t0002g0048 a0001c0031t0002g0048	1	218	0.0046	20	c.134 others(39): Show c.1341+3112_1341+3113insATTTTATATATATATATATA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17359724	A A	ACAAAAAA others(13): Show ACAAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0194	1	218	0.0046	20	c.188 others(39): Show c.1887-6874_1887-6873insCCAAAAAAAAAAAAAAAAAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	12/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17440588	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp1 HG02976.hp1 others(1): Show HG02486.hp2 HG02630.hp1 HG02976.hp1 NA18522.hp2	a0006 a0006	a0006c0007 a0006c0044 a0006c0007 a0006c0044	a0006c0007t0002 a0006c0007t0015 a0006c0044t0002 a0006c0007t0002 a0006c0007t0015 a0006c0044t0002	a0006c0007t0002g0085 a0006c0007t0002g0195 a0006c0007t0015g0083 others(1): Show a0006c0007t0002g0085 a0006c0007t0002g0195 a0006c0007t0015g0083 a0006c0044t0002g0081	4	218	0.0184	20	c.311 others(41): Show c.3115-16922_3115-16921insAAAAAAAAAAAAAAAAAAAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	18/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17455803	G G	GTGGCAGG others(13): Show GTGGCAGGCAGGTTTGGGGAA	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01074.hp1 HG01109.hp1 others(18): Show HG00738.hp2 HG01074.hp1 HG01109.hp1 HG01168.hp1 HG01192.hp1 HG01978.hp2 HG02109.hp1 HG02257.hp1 HG02809.hp2 HG02886.hp2 HG02965.hp2 HG03139.hp2 HG03209.hp1 HG03225.hp2 HG03453.hp2 HG03471.hp2 HG03492.hp2 HG03579.hp2 HG03834.hp1 HG04204.hp2 HG06807.hp1	a0001 a0002 a0006 others(6): Show a0001 a0002 a0006 a0010 a0013 a0016 a0019 a0022 a0024	a0001c0032 a0002c0008 a0002c0013 others(8): Show a0001c0032 a0002c0008 a0002c0013 a0002c0048 a0006c0007 a0010c0012 a0013c0019 a0016c0039 a0019c0047 a0022c0042 a0024c0054	a0001c0032t0006 a0002c0008t0001 a0002c0008t0009 others(10): Show a0001c0032t0006 a0002c0008t0001 a0002c0008t0009 a0002c0013t0002 a0002c0048t0007 a0006c0007t0002 a0010c0012t0002 a0010c0012t0003 a0013c0019t0002 a0016c0039t0001 a0019c0047t0002 a0022c0042t0001 a0024c0054t0013	a0001c0032t0006g0160 a0002c0008t0001g0027 a0002c0008t0001g0035 others(18): Show a0001c0032t0006g0160 a0002c0008t0001g0027 a0002c0008t0001g0035 a0002c0008t0001g0037 a0002c0008t0001g0039 a0002c0008t0001g0040 a0002c0008t0009g0034 a0002c0013t0002g0209 a0002c0013t0002g0210 a0002c0048t0007g0216 a0006c0007t0002g0079 a0010c0012t0002g0018 a0010c0012t0002g0019 a0010c0012t0002g0020 a0010c0012t0003g0025 a0013c0019t0002g0119 a0013c0019t0002g0120 a0016c0039t0001g0151 a0019c0047t0002g0046 a0022c0042t0001g0106 a0024c0054t0013g0047	21	218	0.0963	20	c.311 others(39): Show c.3115-1704_3115-1685dupGGAATGGCAGGCAGGTTTGG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	18/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40698228	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0061 a0001c0003t0003g0061	1	230	0.0044	20	c.-77 others(37): Show c.-77+5645_-77+5664dupTTTTTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40720950	A A	AATATATA others(13): Show AATATATATATATTATATTAT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0199 a0001c0003t0011g0199	1	230	0.0044	20	c.-77 others(39): Show c.-77+28370_-77+28371insTATATTATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40737357	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0035 a0001c0002t0001g0035	1	230	0.0044	20	c.-77 others(39): Show c.-77+44766_-77+44767insATATATATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40759774	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0058 a0001c0001t0007g0058	1	230	0.0044	20	c.-77 others(39): Show c.-77+67201_-77+67202insTTTTTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40773672	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0169 a0001c0002t0001g0169	1	230	0.0044	20	c.-77 others(39): Show c.-77+81081_-77+81082insTATATATATATATATATACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40822148	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01517.hp2 HG02897.hp2 others(3): Show HG00733.hp1 HG01517.hp2 HG02897.hp2 HG02976.hp2 HG03225.hp1 NA18974.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0022 a0001c0002t0001g0031 a0001c0002t0001g0044 others(3): Show a0001c0002t0001g0022 a0001c0002t0001g0031 a0001c0002t0001g0044 a0001c0002t0001g0085 a0001c0002t0001g0092 a0001c0002t0001g0215	6	230	0.0261	20	c.-76 others(39): Show c.-76-86204_-76-86185dupTTTTTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40844069	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02145.hp1 HG00438.hp1 HG02145.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0008 a0001c0001 a0003c0008	a0001c0001t0002 a0003c0008t0002 a0001c0001t0002 a0003c0008t0002	a0001c0001t0002g0059 a0003c0008t0002g0143 a0001c0001t0002g0059 a0003c0008t0002g0143	2	230	0.0087	20	c.-76 others(39): Show c.-76-64272_-76-64271insTTTTTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40863926	T T	TCCTTCCT others(13): Show TCCTTCCTTCCTCCCTCCCTC	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01109.hp2 HG02818.hp1 others(1): Show HG00738.hp2 HG01109.hp2 HG02818.hp1 HG03540.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0007 a0001c0001 a0002c0007	a0001c0001t0001 a0002c0007t0008 a0001c0001t0001 a0002c0007t0008	a0001c0001t0001g0095 a0002c0007t0008g0122 a0002c0007t0008g0186 others(1): Show a0001c0001t0001g0095 a0002c0007t0008g0122 a0002c0007t0008g0186 a0002c0007t0008g0192	4	230	0.0174	20	c.-76 others(39): Show c.-76-44428_-76-44427insTCCTTCCTCCCTCCCTCCCT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40924881	C C	CATATATA others(13): Show CATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01167.hp1 HG02109.hp1 others(7): Show HG01106.hp1 HG01167.hp1 HG02109.hp1 HG02109.hp2 HG02486.hp1 HG02615.hp2 HG02886.hp2 HG03130.hp1 HG03195.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0014 a0001c0001t0026	a0001c0001t0001g0063 a0001c0001t0001g0188 a0001c0001t0001g0212 others(7): Show a0001c0001t0001g0063 a0001c0001t0001g0188 a0001c0001t0001g0212 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0004g0073 a0001c0001t0007g0002 a0001c0001t0007g0055 a0001c0001t0014g0074 a0001c0001t0026g0190	10	230	0.0435	20	c.496 others(35): Show c.496+246_496+247insTATATATATATATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40926171	G G	GGATAGAT others(13): Show GGATAGATAGATAGATAGATA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG03209.hp1 HG00621.hp2 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0223 a0001c0002t0001g0194 a0001c0001t0001g0223 a0001c0002t0001g0194	2	230	0.0087	20	c.496 others(37): Show c.496+1552_496+1571dupGATAGATAGATAGATAGATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41053428	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG03927.hp2 NA18953.hp1 HG01361.hp1 HG03927.hp2 NA18953.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0003 a0001c0003t0005 a0001c0001t0001 a0001c0001t0003 a0001c0003t0005	a0001c0001t0001g0201 a0001c0001t0003g0084 a0001c0003t0005g0070 a0001c0001t0001g0201 a0001c0001t0003g0084 a0001c0003t0005g0070	3	230	0.0130	20	c.298 others(41): Show c.2981-16510_2981-16491dupATATATATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41075705	T T	TGAAGGAA others(13): Show TGAAGGAAGGAAGGAAGGAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp2 NA18974.hp2 HG02717.hp2 NA18974.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0230 a0001c0001t0002g0030 a0001c0001t0001g0230 a0001c0001t0002g0030	2	230	0.0087	20	c.56 others(31): Show c.5670_*5671insGAAGGAAGGAAGGAAGGAAG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		3291		chr12	TogoVar
CNTN1_chr12_40687439_41077415	41075740	A A	AGGAAGGA others(13): Show AGGAAGGAAGGAAGGAAGGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18964.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0086 a0001c0001t0004g0086	1	230	0.0044	20	c.57 others(31): Show c.5705_*5706insGGAAGGAAGGAAGGAAGGAG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		3326		chr12	TogoVar
CNTN3_chr3_74257568_74619659	74366778	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02280.hp2 HG02895.hp1 HG01109.hp2 HG02280.hp2 HG02895.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0015 a0001c0001 a0001c0002 a0002c0015	a0001c0001t0003 a0001c0002t0003 a0002c0015t0013 a0001c0001t0003 a0001c0002t0003 a0002c0015t0013	a0001c0001t0003g0029 a0001c0002t0003g0055 a0002c0015t0013g0019 a0001c0001t0003g0029 a0001c0002t0003g0055 a0002c0015t0013g0019	3	174	0.0172	20	c.947 others(37): Show c.947-1077_947-1076insTATATATATATATATATATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG01071.hp1 HG01071.hp2 others(8): Show HG00609.hp2 HG01071.hp1 HG01071.hp2 HG02015.hp1 HG02145.hp2 HG02809.hp1 HG03209.hp1 HG03225.hp2 HG03471.hp2 HG04184.hp1 NA20129.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0010	a0001c0001 a0001c0006 a0002c0004 others(5): Show a0001c0001 a0001c0006 a0002c0004 a0002c0005 a0003c0003 a0003c0007 a0003c0023 a0010c0024	a0001c0001t0001 a0001c0001t0011 a0001c0001t0026 others(7): Show a0001c0001t0001 a0001c0001t0011 a0001c0001t0026 a0001c0006t0006 a0002c0004t0004 a0002c0005t0002 a0003c0003t0012 a0003c0007t0004 a0003c0023t0016 a0010c0024t0002	a0001c0001t0001g0133 a0001c0001t0011g0008 a0001c0001t0026g0093 others(8): Show a0001c0001t0001g0133 a0001c0001t0011g0008 a0001c0001t0026g0093 a0001c0006t0006g0168 a0002c0004t0004g0095 a0002c0005t0002g0040 a0002c0005t0002g0043 a0003c0003t0012g0012 a0003c0007t0004g0131 a0003c0023t0016g0096 a0010c0024t0002g0054	11	174	0.0632	20	c.947 others(37): Show c.947-1098_947-1079dupTATATATATATATATATATA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74575606	A A	AACACACA others(13): Show AACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02486.hp2 NA19074.hp1 HG02145.hp2 HG02486.hp2 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0014 a0001c0001 a0001c0014	a0001c0001t0003 a0001c0001t0011 a0001c0014t0013 a0001c0001t0003 a0001c0001t0011 a0001c0014t0013	a0001c0001t0003g0017 a0001c0001t0011g0008 a0001c0014t0013g0057 a0001c0001t0003g0017 a0001c0001t0011g0008 a0001c0014t0013g0057	3	174	0.0172	20	c.-81 others(39): Show c.-81+38765_-81+38784dupGTGTGTGTGTGTGTGTGTGT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(13): Show TATATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0092 a0001c0005t0001g0092	1	116	0.0086	20	c.-89 others(37): Show c.-89+1478_-89+1479insTATATATAGAGAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(13): Show TATATATATATATATAGAGAG	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0112 a0001c0002t0007g0112	1	116	0.0086	20	c.-89 others(37): Show c.-89+1478_-89+1479insTATATATATATATAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481033	T T	TTTTCTTT others(13): Show TTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02486.hp2 HG02615.hp1 others(6): Show HG01243.hp1 HG02486.hp2 HG02615.hp1 HG02683.hp1 HG02738.hp2 HG02818.hp1 HG02965.hp2 HG04184.hp1 NA20300.hp2	a0001 a0002 a0007 a0001 a0002 a0007	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0002c0017 a0007c0018	a0001c0001t0004 a0001c0001t0008 a0001c0002t0002 others(6): Show a0001c0001t0004 a0001c0001t0008 a0001c0002t0002 a0001c0002t0006 a0001c0003t0002 a0001c0003t0003 a0001c0005t0001 a0002c0017t0008 a0007c0018t0003	a0001c0001t0004g0081 a0001c0001t0008g0053 a0001c0002t0002g0063 others(6): Show a0001c0001t0004g0081 a0001c0001t0008g0053 a0001c0002t0002g0063 a0001c0002t0006g0071 a0001c0003t0002g0072 a0001c0003t0003g0070 a0001c0005t0001g0092 a0002c0017t0008g0067 a0007c0018t0003g0062	9	116	0.0776	20	c.-88 others(39): Show c.-88-90373_-88-90354dupTTCTTTCTTTCTTTCTTTCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481055	T T	TTCTTTCT others(13): Show TTCTTTCTTTCTTTCTTTCTC	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0038 a0001c0002t0001g0038	1	116	0.0086	20	c.-88 others(39): Show c.-88-90354_-88-90353insTTCTTTCTTTCTCTCTTTCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2520259	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0053 a0001c0001t0008g0053	1	116	0.0086	20	c.-88 others(39): Show c.-88-51145_-88-51126dupTTTTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2607610	C C	CCACACAC others(13): Show CCACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00639.hp1 HG00642.hp1 others(46): Show HG00438.hp1 HG00639.hp1 HG00642.hp1 HG00735.hp1 HG00738.hp1 HG01169.hp2 HG01175.hp2 HG01256.hp2 HG01257.hp1 HG01361.hp1 HG01884.hp1 HG01891.hp2 HG01978.hp1 HG01978.hp2 HG02074.hp1 HG02074.hp2 HG02132.hp1 HG02132.hp2 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp1 HG02738.hp2 HG02818.hp1 HG02965.hp1 HG03041.hp1 HG03139.hp1 HG03209.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03516.hp1 HG03654.hp1 HG03831.hp1 HG04184.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18990.hp1 NA18990.hp2 NA19043.hp1 NA19043.hp2 NA20300.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(14): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0021 a0001c0022 a0001c0023 a0001c0025 a0002c0015 a0002c0017 a0003c0008 a0004c0011 a0005c0026	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(32): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0001c0002t0003 a0001c0002t0005 a0001c0002t0007 a0001c0002t0012 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0006t0002 a0001c0006t0003 a0001c0007t0004 a0001c0007t0016 a0001c0009t0004 a0001c0021t0002 a0001c0022t0003 a0001c0023t0004 a0001c0025t0001 a0002c0015t0003 a0002c0017t0008 a0003c0008t0013 a0004c0011t0003 a0005c0026t0017	a0001c0001t0001g0012 a0001c0001t0001g0033 a0001c0001t0001g0049 others(46): Show a0001c0001t0001g0012 a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0002g0055 a0001c0001t0002g0074 a0001c0001t0002g0086 a0001c0001t0003g0095 a0001c0001t0003g0101 a0001c0001t0004g0081 a0001c0001t0005g0115 a0001c0001t0008g0089 a0001c0002t0001g0027 a0001c0002t0003g0114 a0001c0002t0005g0003 a0001c0002t0007g0009 a0001c0002t0007g0080 a0001c0002t0007g0112 a0001c0002t0012g0013 a0001c0003t0001g0045 a0001c0003t0001g0075 a0001c0003t0001g0116 a0001c0003t0002g0072 a0001c0003t0002g0073 a0001c0003t0003g0015 a0001c0003t0003g0046 a0001c0003t0006g0040 a0001c0003t0011g0113 a0001c0004t0001g0036 a0001c0004t0001g0106 a0001c0004t0002g0022 a0001c0004t0002g0048 a0001c0004t0006g0044 a0001c0005t0001g0090 a0001c0005t0001g0096 a0001c0005t0006g0032 a0001c0006t0002g0060 a0001c0006t0003g0069 a0001c0007t0004g0066 a0001c0007t0016g0105 a0001c0009t0004g0005 a0001c0021t0002g0025 a0001c0022t0003g0083 a0001c0023t0004g0041 a0001c0025t0001g0100 a0002c0015t0003g0103 a0002c0017t0008g0067 a0003c0008t0013g0109 a0004c0011t0003g0065 a0005c0026t0017g0047	49	116	0.4224	20	c.55+ others(37): Show c.55+36068_55+36069insCACACACACACACACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2611297	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0030 a0001c0001t0002g0030	1	116	0.0086	20	c.55+ others(37): Show c.55+39754_55+39755insAAAAAAAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2798365	A A	ATATCTAT others(13): Show ATATCTATCTACCTATCTATC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02451.hp2 HG02615.hp1 others(6): Show HG02258.hp1 HG02451.hp2 HG02615.hp1 HG02717.hp2 HG02818.hp1 HG02886.hp2 HG03139.hp1 HG03471.hp1 HG03486.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0004 a0001c0005 others(4): Show a0001c0001 a0001c0004 a0001c0005 a0001c0006 a0001c0024 a0002c0017 a0003c0008	a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 others(6): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 a0001c0004t0006 a0001c0005t0010 a0001c0006t0002 a0001c0024t0015 a0002c0017t0008 a0003c0008t0013	a0001c0001t0002g0030 a0001c0001t0004g0081 a0001c0001t0008g0043 others(6): Show a0001c0001t0002g0030 a0001c0001t0004g0081 a0001c0001t0008g0043 a0001c0004t0006g0068 a0001c0005t0010g0085 a0001c0006t0002g0026 a0001c0024t0015g0057 a0002c0017t0008g0067 a0003c0008t0013g0109	9	116	0.0776	20	c.359 others(39): Show c.359-21121_359-21120insTATCTATCTACCTATCTATC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2798365	A A	ATATCTAT others(13): Show ATATCTATCTATCTATCTATC	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00639.hp1 HG00735.hp2 others(23): Show HG00140.hp2 HG00639.hp1 HG00735.hp2 HG00738.hp2 HG01169.hp1 HG01175.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01261.hp2 HG01361.hp1 HG02523.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02683.hp2 HG02738.hp1 HG02738.hp2 HG03130.hp2 HG03209.hp1 HG03239.hp2 HG03540.hp2 HG03654.hp2 HG03831.hp1 HG04184.hp1 NA19043.hp1	a0001 a0004 a0008 a0001 a0004 a0008	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0004c0011 a0008c0028	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(13): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0002t0001 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0004t0002 a0001c0005t0006 a0001c0006t0004 a0001c0007t0004 a0001c0009t0014 a0004c0011t0003 a0008c0028t0001	a0001c0001t0002g0028 a0001c0001t0002g0055 a0001c0001t0003g0095 others(23): Show a0001c0001t0002g0028 a0001c0001t0002g0055 a0001c0001t0003g0095 a0001c0001t0003g0101 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 a0001c0001t0005g0115 a0001c0002t0001g0038 a0001c0002t0001g0108 a0001c0002t0007g0087 a0001c0003t0001g0045 a0001c0003t0001g0094 a0001c0003t0002g0072 a0001c0003t0003g0046 a0001c0003t0003g0070 a0001c0003t0006g0040 a0001c0004t0002g0022 a0001c0004t0002g0076 a0001c0005t0006g0010 a0001c0006t0004g0004 a0001c0007t0004g0066 a0001c0009t0014g0039 a0004c0011t0003g0065 a0004c0011t0003g0111 a0008c0028t0001g0023	26	116	0.2241	20	c.359 others(39): Show c.359-21121_359-21120insTATCTATCTATCTATCTATC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2798397	C C	CTATCTAT others(13): Show CTATCTATCTATCTATCTATA	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG02165.hp1 HG02683.hp1 HG01361.hp2 HG02165.hp1 HG02683.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0002 a0001c0002t0004 a0001c0004t0001 a0001c0002t0002 a0001c0002t0004 a0001c0004t0001	a0001c0002t0002g0063 a0001c0002t0004g0017 a0001c0004t0001g0020 a0001c0002t0002g0063 a0001c0002t0004g0017 a0001c0004t0001g0020	3	116	0.0259	20	c.359 others(39): Show c.359-21076_359-21075insATCTATATATCTATCTATCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2804737	C C	CTTTAGTT others(13): Show CTTTAGTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02717.hp1 HG03209.hp2 HG02257.hp2 HG02717.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0008 a0001c0002t0007 a0001c0005t0006 a0001c0001t0008 a0001c0002t0007 a0001c0005t0006	a0001c0001t0008g0089 a0001c0002t0007g0009 a0001c0005t0006g0032 a0001c0001t0008g0089 a0001c0002t0007g0009 a0001c0005t0006g0032	3	116	0.0259	20	c.359 others(39): Show c.359-14746_359-14745insAGTTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2804737	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01243.hp1 HG01361.hp2 others(4): Show HG00140.hp2 HG01243.hp1 HG01361.hp2 HG01891.hp2 HG03654.hp2 HG03831.hp2 NA20300.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0008c0028	a0001c0001t0002 a0001c0001t0008 a0001c0002t0002 others(4): Show a0001c0001t0002 a0001c0001t0008 a0001c0002t0002 a0001c0002t0004 a0001c0002t0012 a0001c0006t0003 a0008c0028t0001	a0001c0001t0002g0028 a0001c0001t0008g0053 a0001c0002t0002g0078 others(4): Show a0001c0001t0002g0028 a0001c0001t0008g0053 a0001c0002t0002g0078 a0001c0002t0004g0017 a0001c0002t0012g0013 a0001c0006t0003g0069 a0008c0028t0001g0023	7	116	0.0603	20	c.359 others(39): Show c.359-14740_359-14739insTTTTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2815873	C C	CATATATA others(13): Show CATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03540.hp1 HG03209.hp1 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0006 a0001c0002 a0001c0006	a0001c0002t0003 a0001c0006t0004 a0001c0002t0003 a0001c0006t0004	a0001c0002t0003g0024 a0001c0006t0004g0004 a0001c0002t0003g0024 a0001c0006t0004g0004	2	116	0.0172	20	c.359 others(37): Show c.359-3595_359-3594insATATATATATATATATATAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2834898	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01978.hp2 HG02451.hp1 others(2): Show HG01978.hp1 HG01978.hp2 HG02451.hp1 HG02818.hp1 HG03139.hp2	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0002 a0001c0003 a0001c0004 others(2): Show a0001c0002 a0001c0003 a0001c0004 a0002c0017 a0006c0027	a0001c0002t0001 a0001c0003t0002 a0001c0004t0006 others(2): Show a0001c0002t0001 a0001c0003t0002 a0001c0004t0006 a0002c0017t0008 a0006c0027t0001	a0001c0002t0001g0088 a0001c0003t0002g0073 a0001c0004t0006g0044 others(2): Show a0001c0002t0001g0088 a0001c0003t0002g0073 a0001c0004t0006g0044 a0002c0017t0008g0067 a0006c0027t0001g0007	5	116	0.0431	20	c.454 others(39): Show c.454+15322_454+15341dupTTTTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2994594	C C	CATATATA others(13): Show CATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0020 a0001c0020	a0001c0020t0002 a0001c0020t0002	a0001c0020t0002g0082 a0001c0020t0002g0082	1	116	0.0086	20	c.148 others(39): Show c.1486+6123_1486+6142dupATATATATATATATATATAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99168578	T T	TCAAAACA others(13): Show TCAAAACAAAACAAAACAAAA	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG02132.hp2 HG02257.hp2 others(5): Show HG01169.hp2 HG02132.hp2 HG02257.hp2 HG02886.hp2 HG02965.hp1 NA18939.hp1 NA19070.hp1 NA20300.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0005 a0006	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0005c0005 a0006c0006	a0001c0001t0005 a0001c0001t0015 a0002c0002t0001 others(5): Show a0001c0001t0005 a0001c0001t0015 a0002c0002t0001 a0003c0003t0017 a0005c0005t0002 a0005c0005t0020 a0006c0006t0001 a0006c0006t0011	a0001c0001t0005g0048 a0001c0001t0015g0064 a0002c0002t0001g0003 others(5): Show a0001c0001t0005g0048 a0001c0001t0015g0064 a0002c0002t0001g0003 a0003c0003t0017g0065 a0005c0005t0002g0051 a0005c0005t0020g0024 a0006c0006t0001g0005 a0006c0006t0011g0033	8	66	0.1212	20	c.-21 others(43): Show c.-210+147314_-210+147333dupCAAAACAAAACAAAACAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99201351	T T	TTTCCTTC others(13): Show TTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02258.hp1 HG01081.hp1 HG02258.hp1	a0004 a0010 a0004 a0010	a0004c0004 a0010c0013 a0004c0004 a0010c0013	a0004c0004t0018 a0010c0013t0011 a0004c0004t0018 a0010c0013t0011	a0004c0004t0018g0028 a0010c0013t0011g0009 a0004c0004t0018g0028 a0010c0013t0011g0009	2	66	0.0303	20	c.-20 others(43): Show c.-209-123983_-209-123964dupCTTCCTTCCTTCCTTCCTTC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99213364	A A	ATGTATAT others(13): Show ATGTATATACATATATACACG	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00733.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0022 a0002c0002t0022	a0002c0002t0022g0013 a0002c0002t0022g0013	1	66	0.0152	20	c.-20 others(43): Show c.-209-111974_-209-111973insCATATATACACGTGTATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar

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