Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FOXD2_chr1_47433044_47445691	47435570	A A	AAAAAAAA others(13): Show AAAAAAAAAAAAAAAAAAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01981.hp1 HG01981.hp2 HG01981.hp1 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	2	416	0.0048	20	c.-25 others(31): Show c.-2566_-2565insAAAAAAAAAAAAAAAAAAAG	FOXD2	ENSG00000186564.6	transcript	ENST00000334793.6	protein_coding		2473		chr1	TogoVar
FOXD4L1_chr2_113493665_113506150	113501509	G G	GTATATAT others(13): Show GTATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG01496.hp1 HG02055.hp1 others(3): Show HG00280.hp1 HG01496.hp1 HG02055.hp1 HG02723.hp2 HG02886.hp2 HG03471.hp2	a0003 a0004 a0003 a0004	a0003c0003 a0004c0004 a0003c0003 a0004c0004	a0003c0003t0005 a0004c0004t0007 a0004c0004t0018 a0003c0003t0005 a0004c0004t0007 a0004c0004t0018	a0003c0003t0005g0000 a0004c0004t0007g0000 a0004c0004t0018g0000 a0003c0003t0005g0000 a0004c0004t0007g0000 a0004c0004t0018g0000	6	326	0.0184	20	c.10 others(31): Show c.1026_*1027insTATATATATATATATATATA	FOXD4L1	ENSG00000184492.7	transcript	ENST00000306507.7	protein_coding		360		chr2	TogoVar
FOXD4L1_chr2_113493665_113506150	113501512	C C	CATATATA others(13): Show CATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02630.hp2 HG03139.hp1 HG02630.hp2 HG03139.hp1	a0003 a0003	a0003c0003 a0003c0008 a0003c0003 a0003c0008	a0003c0003t0005 a0003c0008t0005 a0003c0003t0005 a0003c0008t0005	a0003c0003t0005g0000 a0003c0008t0005g0000 a0003c0003t0005g0000 a0003c0008t0005g0000	2	326	0.0061	20	c.10 others(31): Show c.1029_*1030insATATATATATATATATATAT	FOXD4L1	ENSG00000184492.7	transcript	ENST00000306507.7	protein_coding		363		chr2	TogoVar
FOXD4L3_chr9_68297867_68310084	68305258	A A	ACTATATA others(13): Show ACTATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00544.hp1 HG02145.hp2 others(2): Show HG00323.hp2 HG00544.hp1 HG02145.hp2 HG02602.hp2 NA18984.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0000 a0002c0001t0001g0000	5	175	0.0286	20	c.10 others(31): Show c.1053_*1054insCTATATATATATATATATAT	FOXD4L3	ENSG00000187559.6	transcript	ENST00000342833.4	protein_coding		175		chr9	TogoVar
FOXD4L3_chr9_68297867_68310084	68305259	T T	TTATATAT others(13): Show TTATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01070.hp1 HG02559.hp1 HG01070.hp1 HG02559.hp1	a0002 a0005 a0002 a0005	a0002c0001 a0005c0006 a0002c0001 a0005c0006	a0002c0001t0004 a0005c0006t0001 a0002c0001t0004 a0005c0006t0001	a0002c0001t0004g0000 a0005c0006t0001g0000 a0002c0001t0004g0000 a0005c0006t0001g0000	2	175	0.0114	20	c.10 others(31): Show c.1054_*1055insTATATATATATATATATATA	FOXD4L3	ENSG00000187559.6	transcript	ENST00000342833.4	protein_coding		176		chr9	TogoVar
FOXD4_chr9_111231_123417	119435	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG02145.hp2 HG02486.hp1 others(1): Show HG01891.hp1 HG02145.hp2 HG02486.hp1 NA18522.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0004 a0004c0005t0004	a0004c0005t0004g0000 a0004c0005t0004g0000	4	452	0.0089	20	c.-13 others(31): Show c.-1317_-1316insAAAAAAAAAAAAAAAAAAAA	FOXD4	ENSG00000170122.6	transcript	ENST00000382500.4	protein_coding		1019		chr9	TogoVar
FOXF1_chr16_86505527_86520422	86512689	A A	AGCAGGCA others(13): Show AGCAGGCAGGCAGGCAGGCAG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02280.hp2 HG02896.hp1 others(7): Show HG01891.hp1 HG02280.hp2 HG02896.hp1 HG02922.hp1 HG03098.hp2 HG03130.hp1 HG03195.hp1 HG03453.hp1 HG03516.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0010 a0001c0003t0014 a0001c0001t0001 a0001c0003t0010 a0001c0003t0014	a0001c0001t0001g0033 a0001c0003t0010g0008 a0001c0003t0014g0008 a0001c0001t0001g0033 a0001c0003t0010g0008 a0001c0003t0014g0008	10	436	0.0229	20	c.980 others(35): Show c.980-225_980-206dupAGGCAGGCAGGCAGGCAGGC	FOXF1	ENSG00000103241.7	transcript	ENST00000262426.6	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr16	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGAGGG others(13): Show GGAGAGGGGGGGGGGGGGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	20	c.-61 others(29): Show c.-610_-609insGAGAGGGGGGGGGGGGGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGGGGG others(13): Show GGAGGGGGGGGGGGGGGGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	20	c.-61 others(29): Show c.-610_-609insGAGGGGGGGGGGGGGGGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGGGGGGG others(13): Show GGGGGGGGGGGGGGGGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0003 a0001c0002t0001g0003	1	412	0.0024	20	c.-61 others(29): Show c.-610_-609insGGGGGGGGGGGGGGGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(13): Show GGGGGGGGGGGGGGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02027.hp2 HG02027.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	20	c.-60 others(29): Show c.-602_-601insGGGGGGGGGGGGGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GGAGAGAG others(13): Show GGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	412	0.0024	20	c.-59 others(29): Show c.-590_-589insGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105370	G G	GGAGAGAG others(13): Show GGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00280.hp1 NA18971.hp1 HG00099.hp1 HG00280.hp1 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0003 a0001c0001t0003g0001 a0001c0001t0001g0003 a0001c0001t0003g0001	3	412	0.0073	20	c.-58 others(29): Show c.-588_-587insGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		526		chr5	TogoVar
FOXI2_chr10_127732185_127746183	127742057	T T	TTGTGTGT others(13): Show TTGTGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp2 HG01168.hp2 HG01975.hp1 others(5): Show HG00673.hp2 HG01168.hp2 HG01975.hp1 HG03239.hp1 HG03710.hp1 HG03834.hp2 NA18974.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0008 a0001c0001t0020 others(3): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0020 a0001c0001t0041 a0001c0001t0097 a0001c0005t0001	a0001c0001t0001g0001 a0001c0001t0008g0001 a0001c0001t0020g0001 others(3): Show a0001c0001t0001g0001 a0001c0001t0008g0001 a0001c0001t0020g0001 a0001c0001t0041g0001 a0001c0001t0097g0001 a0001c0005t0001g0001	8	434	0.0184	20	c.30 others(31): Show c.3092_*3093insTGTGTGTGTGTGTGTGTGTG	FOXI2	ENSG00000186766.8	transcript	ENST00000388920.5	protein_coding		875		chr10	TogoVar
FOXJ3_chr1_42171548_42340235	42183309	G G	GGGGGAGG others(13): Show GGGGGAGGGGAGGGGAGGGGA	intron_variant intron_variant	MODIFIER	HG00738.hp2 NA18946.hp1 NA18960.hp2 others(9): Show HG00738.hp2 NA18946.hp1 NA18960.hp2 NA18963.hp2 NA18971.hp2 NA18973.hp2 NA18988.hp2 NA19004.hp1 NA19007.hp2 NA19011.hp2 NA19065.hp1 NA19066.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0047 others(9): Show a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0047 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0224 a0002c0002t0001g0118	12	332	0.0361	20	c.164 others(39): Show c.1646-1305_1646-1286dupTCCCCTCCCCTCCCCTCCCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	11/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42218064	T T	TTGAAATA others(13): Show TTGAAATAAATATTTATTCAG	intron_variant intron_variant	MODIFIER	HG03490.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0300 a0001c0001t0002g0300	1	332	0.0030	20	c.528 others(37): Show c.528+9799_528+9818dupCTGAATAAATATTTATTTCA	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42291079	T T	TAGACAGA others(13): Show TAGACAGACAGACAGACAGAC	intron_variant intron_variant	MODIFIER	HG02572.hp2 NA18522.hp2 NA18968.hp2 HG02572.hp2 NA18522.hp2 NA18968.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0005 a0003c0003 a0001c0001 a0001c0005 a0003c0003	a0001c0001t0001 a0001c0005t0001 a0003c0003t0006 a0001c0001t0001 a0001c0005t0001 a0003c0003t0006	a0001c0001t0001g0174 a0001c0005t0001g0016 a0003c0003t0006g0190 a0001c0001t0001g0174 a0001c0005t0001g0016 a0003c0003t0006g0190	3	332	0.0090	20	c.45- others(37): Show c.45-12408_45-12407insGTCTGTCTGTCTGTCTGTCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	2/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42291079	T T	TAGATAGA others(13): Show TAGATAGATAGACAGACAGAC	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0003 a0004c0004t0003	a0004c0004t0003g0317 a0004c0004t0003g0317	1	332	0.0030	20	c.45- others(37): Show c.45-12408_45-12407insGTCTGTCTGTCTATCTATCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	2/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42291083	T T	TAGACAGA others(13): Show TAGACAGACAGACAGACAGAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp2 NA18995.hp2 HG01496.hp1 HG03225.hp2 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0114 a0001c0001t0001g0160 a0001c0001t0009g0129 a0001c0001t0001g0114 a0001c0001t0001g0160 a0001c0001t0009g0129	3	332	0.0090	20	c.45- others(37): Show c.45-12412_45-12411insGTCTGTCTGTCTGTCTGTCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	2/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42291083	T T	TAGATAGA others(13): Show TAGATAGACAGACAGACAGAC	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG02293.hp2 HG03017.hp1 others(2): Show HG01168.hp1 HG02293.hp2 HG03017.hp1 HG04199.hp2 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0001 a0001c0001t0018	a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0212 others(2): Show a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0212 a0001c0001t0001g0308 a0001c0001t0018g0310	5	332	0.0151	20	c.45- others(37): Show c.45-12412_45-12411insGTCTGTCTGTCTGTCTATCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	2/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42291083	T T	TAGATAGA others(13): Show TAGATAGATAGACAGACAGAC	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0021 a0001c0001t0012g0021	1	332	0.0030	20	c.45- others(37): Show c.45-12412_45-12411insGTCTGTCTGTCTATCTATCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	2/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42311650	A A	AGTAGTAG others(13): Show AGTAGTAGTAGTAGTAGTAGT	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0192 a0001c0001t0001g0192	1	332	0.0030	20	c.-17 others(35): Show c.-17-541_-17-540insACTACTACTACTACTACTAC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	1/12			chr1	TogoVar
FOXK1_chr7_4677295_4776442	4705552	T T	TCGCTCTC others(13): Show TCGCTCTCGCTCTCGCTCTCG	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0015 a0001c0003t0015	a0001c0003t0015g0094 a0001c0003t0015g0094	1	294	0.0034	20	c.560 others(39): Show c.560+22685_560+22686insGCTCTCGCTCTCGCTCTCGC	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXK1_chr7_4677295_4776442	4705554	T T	TCTCTCTC others(13): Show TCTCTCTCTCTCTCGCTCTCG	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0065 a0001c0002t0003g0065	1	294	0.0034	20	c.560 others(39): Show c.560+22691_560+22692insTCTCTCTCGCTCTCGCTCTC	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXK1_chr7_4677295_4776442	4705964	A A	ATATATAT others(13): Show ATATATATACGTATATATACG	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG02630.hp2 HG02809.hp2 others(2): Show HG00673.hp2 HG02630.hp2 HG02809.hp2 HG02976.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0035 a0001c0002t0004 a0001c0003t0007 others(1): Show a0001c0001t0035 a0001c0002t0004 a0001c0003t0007 a0001c0003t0101	a0001c0001t0035g0064 a0001c0002t0004g0252 a0001c0003t0007g0090 others(2): Show a0001c0001t0035g0064 a0001c0002t0004g0252 a0001c0003t0007g0090 a0001c0003t0007g0226 a0001c0003t0101g0242	5	294	0.0170	20	c.560 others(39): Show c.560+23138_560+23157dupATATATACGTATATATACGT	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXK1_chr7_4677295_4776442	4706006	A A	ATATATAC others(13): Show ATATATACGTATATATACGTG	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01884.hp1 HG01981.hp2 others(5): Show HG01099.hp1 HG01884.hp1 HG01981.hp2 HG02074.hp1 NA18944.hp1 NA18954.hp1 NA19082.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0020 a0001c0001t0066 a0001c0003t0135 a0001c0004t0009	a0001c0001t0001g0152 a0001c0001t0002g0179 a0001c0001t0003g0138 others(5): Show a0001c0001t0001g0152 a0001c0001t0002g0179 a0001c0001t0003g0138 a0001c0001t0005g0047 a0001c0001t0020g0110 a0001c0001t0066g0120 a0001c0003t0135g0255 a0001c0004t0009g0143	8	294	0.0272	20	c.560 others(39): Show c.560+23148_560+23167dupATATATACGTGTATATACGT	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXK2_chr17_82514732_82609602	82607537	G G	GTATATAT others(13): Show GTATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp2 NA20300.hp2 HG02055.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0010 a0002c0002t0017 a0001c0001t0010 a0002c0002t0017	a0001c0001t0010g0168 a0002c0002t0017g0114 a0001c0001t0010g0168 a0002c0002t0017g0114	2	308	0.0065	20	c.60 others(31): Show c.6038_*6039insTATATATATATATATATATA	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2936		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607537	G G	GTGTGTAT others(13): Show GTGTGTATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18950.hp2 NA19004.hp1 NA18950.hp2 NA19004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0094 a0001c0001t0001g0075 a0001c0001t0001g0094	2	308	0.0065	20	c.60 others(31): Show c.6038_*6039insTGTGTATATATATATATATA	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2936		chr17	TogoVar
FOXN2_chr2_48309682_48384295	48309894	C C	CGTGTGTG others(13): Show CGTGTGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00438.hp2 HG01070.hp2 others(9): Show HG00099.hp1 HG00438.hp2 HG01070.hp2 HG01123.hp1 HG01123.hp2 HG01516.hp1 HG02976.hp2 HG03195.hp2 NA18906.hp2 NA18992.hp1 NA20752.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 others(2): Show a0001c0001t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0022 a0001c0004t0003	a0001c0001t0001g0208 a0001c0001t0001g0216 a0001c0001t0001g0221 others(9): Show a0001c0001t0001g0208 a0001c0001t0001g0216 a0001c0001t0001g0221 a0001c0001t0001g0232 a0001c0001t0001g0253 a0001c0002t0002g0010 a0001c0002t0002g0274 a0001c0002t0003g0247 a0001c0002t0003g0248 a0001c0002t0003g0251 a0001c0002t0022g0237 a0001c0004t0003g0020	12	344	0.0349	20	c.-50 others(31): Show c.-5077_-5076insGTGTGTGTGTGTGTGTGTGT	FOXN2	ENSG00000170802.17	transcript	ENST00000340553.8	protein_coding		4787		chr2	TogoVar
FOXN3_chr14_89151177_89422233	89161556	C C	CGTGTGTG others(13): Show CGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00642.hp1 HG02809.hp2 NA18906.hp2 HG00642.hp1 HG02809.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0043 a0001c0001t0072 a0001c0001t0073 a0001c0001t0043 a0001c0001t0072 a0001c0001t0073	a0001c0001t0043g0126 a0001c0001t0072g0226 a0001c0001t0073g0182 a0001c0001t0043g0126 a0001c0001t0072g0226 a0001c0001t0073g0182	3	230	0.0130	20	c.83 others(29): Show c.838_*857dupACACACACACACACACACAC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	6/6	857		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89312284	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0004 a0001c0001t0019g0004	1	230	0.0044	20	c.681 others(39): Show c.681-31271_681-31270insTTTTTTTTTTTTTTTTTTTT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89336216	C C	CTCCATCC others(13): Show CTCCATCCATCCATCCATCCA	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00597.hp1 HG00642.hp1 others(35): Show HG00558.hp2 HG00597.hp1 HG00642.hp1 HG00673.hp2 HG01070.hp1 HG01123.hp1 HG01175.hp1 HG01175.hp2 HG01255.hp1 HG01978.hp2 HG02040.hp2 HG02056.hp1 HG02071.hp1 HG02071.hp2 HG02486.hp2 HG02572.hp2 HG02602.hp2 HG02615.hp1 HG02738.hp2 HG03492.hp1 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03704.hp2 NA18747.hp1 NA18942.hp1 NA18943.hp1 NA18947.hp2 NA18960.hp1 NA18964.hp2 NA18971.hp1 NA18995.hp1 NA19030.hp1 NA19065.hp1 NA19078.hp1 NA19240.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(20): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0018 a0001c0001t0025 a0001c0001t0026 a0001c0001t0029 a0001c0001t0043 a0001c0001t0045 a0001c0001t0047 a0001c0001t0051 a0001c0001t0053 a0001c0001t0055 a0001c0001t0092 a0001c0001t0097 a0001c0003t0001 a0001c0003t0083	a0001c0001t0001g0084 a0001c0001t0001g0092 a0001c0001t0001g0119 others(35): Show a0001c0001t0001g0084 a0001c0001t0001g0092 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0123 a0001c0001t0001g0134 a0001c0001t0001g0142 a0001c0001t0001g0199 a0001c0001t0001g0227 a0001c0001t0003g0016 a0001c0001t0003g0141 a0001c0001t0005g0096 a0001c0001t0005g0108 a0001c0001t0006g0102 a0001c0001t0008g0041 a0001c0001t0008g0050 a0001c0001t0008g0089 a0001c0001t0009g0021 a0001c0001t0009g0150 a0001c0001t0010g0056 a0001c0001t0012g0145 a0001c0001t0012g0171 a0001c0001t0014g0189 a0001c0001t0018g0158 a0001c0001t0025g0093 a0001c0001t0025g0228 a0001c0001t0026g0198 a0001c0001t0029g0048 a0001c0001t0043g0126 a0001c0001t0045g0030 a0001c0001t0047g0116 a0001c0001t0051g0165 a0001c0001t0053g0197 a0001c0001t0055g0028 a0001c0001t0092g0024 a0001c0001t0097g0164 a0001c0003t0001g0052 a0001c0003t0083g0215	38	230	0.1652	20	c.680 others(39): Show c.680+14436_680+14455dupTGGATGGATGGATGGATGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89358057	T T	TACCAGGT others(13): Show TACCAGGTCCTCTAATGCATG	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0050 a0001c0001t0050	a0001c0001t0050g0177 a0001c0001t0050g0177	1	230	0.0044	20	c.544 others(37): Show c.544-7269_544-7250dupCATGCATTAGAGGACCTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89363947	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0156 a0001c0001t0041g0156	1	230	0.0044	20	c.544 others(39): Show c.544-13159_544-13140dupATATATATATATATATATAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89377020	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0148 a0001c0001t0009g0148	1	230	0.0044	20	c.544 others(39): Show c.544-26232_544-26213dupTTTTTTTTTTTTTTTTTTTT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89415847	T T	TACACACA others(13): Show TACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01517.hp1 HG02723.hp2 others(3): Show HG00639.hp2 HG01517.hp1 HG02723.hp2 HG03471.hp1 HG03669.hp1 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(3): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0025 a0001c0001t0056 a0001c0001t0077	a0001c0001t0001g0101 a0001c0001t0005g0099 a0001c0001t0006g0102 others(3): Show a0001c0001t0001g0101 a0001c0001t0005g0099 a0001c0001t0006g0102 a0001c0001t0025g0228 a0001c0001t0056g0100 a0001c0001t0077g0187	6	230	0.0261	20	c.-15 others(37): Show c.-15+1004_-15+1023dupGTGTGTGTGTGTGTGTGTGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	1/5			chr14	TogoVar
FOXN4_chr12_109272978_109314284	109285153	T T	TGCGCATA others(13): Show TGCGCATATTTGTGTGTGTGC	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0004 a0004	a0004c0016 a0004c0016	a0004c0016t0002 a0004c0016t0002	a0004c0016t0002g0133 a0004c0016t0002g0133	1	368	0.0027	20	c.901 others(35): Show c.901+131_901+150dupGCACACACACAAATATGCGC	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding	8/9			chr12	TogoVar
FOXN4_chr12_109272978_109314284	109304221	G G	GAGAAAGA others(13): Show GAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp1 NA19088.hp1 HG01167.hp2 HG01169.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0222	3	368	0.0082	20	c.86+ others(35): Show c.86+3995_86+4014dupTTCTTTCTTTCTTTCTTTCT	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding	2/9			chr12	TogoVar
FOXN4_chr12_109272978_109314284	109312381	T T	TTTTTGTT others(13): Show TTTTTGTTTTGTTTTGTTTTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp2 HG02809.hp1 HG01891.hp2 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0279 a0001c0001t0003g0299 a0001c0001t0003g0279 a0001c0001t0003g0299	2	368	0.0054	20	c.-32 others(31): Show c.-3267_-3266insCAAAACAAAACAAAACAAAA	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding		3098		chr12	TogoVar
FOXP1_chr3_70949708_71588728	71000794	A A	AAAAATAA others(13): Show AAAAATAAAATAAAATAAAAT	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG01884.hp2 HG02723.hp1 others(4): Show HG01169.hp2 HG01884.hp2 HG02723.hp1 HG02922.hp1 HG03209.hp2 HG03579.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0037 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0037 a0001c0001t0045 a0001c0001t0052 a0001c0001t0054 a0001c0001t0061	a0001c0001t0001g0021 a0001c0001t0003g0086 a0001c0001t0037g0011 others(4): Show a0001c0001t0001g0021 a0001c0001t0003g0086 a0001c0001t0037g0011 a0001c0001t0045g0043 a0001c0001t0052g0084 a0001c0001t0054g0058 a0001c0001t0061g0077	7	96	0.0729	20	c.106 others(37): Show c.1062+158_1062+177dupATTTTATTTTATTTTATTTT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	13/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71067731	T T	TACACACA others(13): Show TACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0013 a0001c0001t0038g0013	1	96	0.0104	20	c.283 others(39): Show c.283-13978_283-13959dupGTGTGTGTGTGTGTGTGTGT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	7/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71091129	G G	GTGTGTGT others(13): Show GTGTGTGTGTGTGTGTGTGTA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp2 HG01071.hp1 others(23): Show HG00639.hp1 HG00639.hp2 HG01071.hp1 HG01071.hp2 HG01109.hp2 HG01169.hp2 HG01496.hp2 HG01884.hp2 HG01952.hp1 HG01952.hp2 HG02145.hp1 HG02622.hp1 HG02723.hp1 HG02818.hp2 HG02897.hp2 HG03041.hp2 HG03130.hp2 HG03209.hp1 HG03209.hp2 HG03239.hp2 HG03579.hp1 HG03704.hp1 HG04199.hp1 HG04228.hp1 NA18906.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(22): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0001c0001t0018 a0001c0001t0020 a0001c0001t0037 a0001c0001t0045 a0001c0001t0048 a0001c0001t0050 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0057 a0001c0001t0059 a0001c0001t0062 a0001c0001t0068 a0001c0001t0070 a0001c0001t0071 a0001c0001t0074 a0001c0001t0075 a0001c0001t0078	a0001c0001t0002g0051 a0001c0001t0002g0080 a0001c0001t0003g0086 others(23): Show a0001c0001t0002g0051 a0001c0001t0002g0080 a0001c0001t0003g0086 a0001c0001t0005g0004 a0001c0001t0009g0029 a0001c0001t0010g0091 a0001c0001t0014g0066 a0001c0001t0015g0050 a0001c0001t0018g0032 a0001c0001t0020g0010 a0001c0001t0037g0011 a0001c0001t0045g0043 a0001c0001t0048g0031 a0001c0001t0050g0095 a0001c0001t0053g0074 a0001c0001t0054g0058 a0001c0001t0055g0019 a0001c0001t0057g0048 a0001c0001t0059g0087 a0001c0001t0062g0034 a0001c0001t0068g0096 a0001c0001t0070g0025 a0001c0001t0071g0064 a0001c0001t0074g0069 a0001c0001t0075g0030 a0001c0001t0078g0028	26	96	0.2708	20	c.282 others(39): Show c.282+21406_282+21407insTACACACACACACACACACA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	7/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71113712	C C	CAAAATAA others(13): Show CAAAATAAAATAAAATAAAAT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00735.hp1 HG01169.hp2 others(22): Show HG00639.hp2 HG00735.hp1 HG01169.hp2 HG01884.hp2 HG01952.hp1 HG01952.hp2 HG02055.hp2 HG02109.hp2 HG02257.hp2 HG02258.hp2 HG02451.hp1 HG02622.hp1 HG02717.hp2 HG02723.hp1 HG02809.hp2 HG02818.hp2 HG03041.hp2 HG03098.hp1 HG03209.hp1 HG03209.hp2 HG03579.hp1 HG04199.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0011 others(22): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0011 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0023 a0001c0001t0025 a0001c0001t0027 a0001c0001t0033 a0001c0001t0037 a0001c0001t0040 a0001c0001t0043 a0001c0001t0045 a0001c0001t0054 a0001c0001t0059 a0001c0001t0062 a0001c0001t0067 a0001c0001t0068 a0001c0001t0070 a0001c0001t0071 a0001c0001t0072 a0001c0001t0074 a0001c0001t0077	a0001c0001t0003g0086 a0001c0001t0005g0004 a0001c0001t0011g0001 others(22): Show a0001c0001t0003g0086 a0001c0001t0005g0004 a0001c0001t0011g0001 a0001c0001t0014g0066 a0001c0001t0015g0050 a0001c0001t0016g0041 a0001c0001t0017g0052 a0001c0001t0023g0045 a0001c0001t0025g0015 a0001c0001t0027g0046 a0001c0001t0033g0057 a0001c0001t0037g0011 a0001c0001t0040g0033 a0001c0001t0043g0053 a0001c0001t0045g0043 a0001c0001t0054g0058 a0001c0001t0059g0087 a0001c0001t0062g0034 a0001c0001t0067g0006 a0001c0001t0068g0096 a0001c0001t0070g0025 a0001c0001t0071g0064 a0001c0001t0072g0005 a0001c0001t0074g0069 a0001c0001t0077g0008	25	96	0.2604	20	c.181 others(37): Show c.181-1095_181-1076dupATTTTATTTTATTTTATTTT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	6/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71115317	T T	TTTTATTT others(13): Show TTTTATTTATTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02145.hp2 HG04199.hp2 HG02132.hp1 HG02145.hp2 HG04199.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0051 a0001c0001t0080 a0001c0001t0011 a0001c0001t0051 a0001c0001t0080	a0001c0001t0011g0001 a0001c0001t0051g0081 a0001c0001t0080g0075 a0001c0001t0011g0001 a0001c0001t0051g0081 a0001c0001t0080g0075	3	96	0.0313	20	c.181 others(37): Show c.181-2700_181-2681dupTAAATAAATAAATAAATAAA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	6/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71158079	C C	CGAAGGAA others(13): Show CGAAGGAAGGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0047 a0001c0001t0022g0047	1	96	0.0104	20	c.180 others(39): Show c.180+40122_180+40123insCTTCCTTCCTTCCTTCCTTC	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	6/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71158083	A A	AGAAGGAA others(13): Show AGAAGGAAGGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA18522.hp1 HG03579.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0052 a0001c0001t0035 a0001c0001t0052	a0001c0001t0035g0082 a0001c0001t0052g0084 a0001c0001t0035g0082 a0001c0001t0052g0084	2	96	0.0208	20	c.180 others(39): Show c.180+40099_180+40118dupCTTCCTTCCTTCCTTCCTTC	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	6/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71208536	T T	TTGTGTGT others(13): Show TTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03704.hp1 NA18906.hp2 HG03704.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0053 a0001c0001t0016 a0001c0001t0053	a0001c0001t0016g0041 a0001c0001t0053g0074 a0001c0001t0016g0041 a0001c0001t0053g0074	2	96	0.0208	20	c.-11 others(39): Show c.-11-10164_-11-10145dupCACACACACACACACACACA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	5/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71232877	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03579.hp2 HG02055.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0052 a0001c0001t0008 a0001c0001t0052	a0001c0001t0008g0036 a0001c0001t0052g0084 a0001c0001t0008g0036 a0001c0001t0052g0084	2	96	0.0208	20	c.-11 others(39): Show c.-11-34486_-11-34485insTTTTTTTTTTTTTTTTTTTT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	5/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71267124	A A	AGAGAGAG others(13): Show AGAGAGAGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0016 a0001c0001t0009g0016	1	96	0.0104	20	c.-12 others(39): Show c.-12+32695_-12+32696insACACACACACACACTCTCTC	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	5/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71267124	A A	AGAGAGTG others(13): Show AGAGAGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0009 a0001c0001t0004g0009	1	96	0.0104	20	c.-12 others(39): Show c.-12+32695_-12+32696insACACACACACACACACTCTC	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	5/20			chr3	TogoVar

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