Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ARFGEF3_chr6_138156939_138349663	138270427	G G	GACACACA others(13): Show GACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0141 a0001c0001t0001g0141	1	190	0.0053	20	c.212 others(39): Show c.2128+6834_2128+6853dupCACACACACACACACACACA	ARFGEF3	ENSG00000112379.9	transcript	ENST00000251691.5	protein_coding	12/33		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARFIP1_chr4_152774954_152917357	152795820	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02572.hp1 HG02145.hp2 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	a0001c0001t0002g0265 a0001c0002t0002g0199 a0001c0001t0002g0265 a0001c0002t0002g0199	2	342	0.0059	20	c.-10 others(39): Show c.-10+15607_-10+15626dupTTTTTTTTTTTTTTTTTTTT	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARFIP1_chr4_152774954_152917357	152808283	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG01081.hp1 HG01243.hp1 others(8): Show HG00408.hp2 HG01081.hp1 HG01243.hp1 HG03654.hp1 HG04115.hp2 NA18957.hp1 NA18965.hp1 NA19056.hp1 NA19077.hp2 NA19079.hp2 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0235 others(8): Show a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0235 a0001c0001t0001g0254 a0001c0001t0001g0296 a0001c0001t0002g0017 a0001c0001t0002g0018 a0001c0001t0003g0094 a0001c0001t0003g0118 a0001c0001t0003g0138 a0001c0001t0003g0142	11	342	0.0322	20	c.-9- others(37): Show c.-9-21327_-9-21308dupTTTTTTTTTTTTTTTTTTTT	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARFIP1_chr4_152774954_152917357	152847124	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG03579.hp1 NA19056.hp2 HG02602.hp1 HG03579.hp1 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0264 a0001c0001t0001g0293 a0001c0001t0001g0303 a0001c0001t0001g0264 a0001c0001t0001g0293 a0001c0001t0001g0303	3	342	0.0088	20	c.94- others(37): Show c.94-16477_94-16458dupTTTTTTTTTTTTTTTTTTTT	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARFIP2_chr11_6471519_6486331	6472874	A A	ATTCTGCA others(13): Show ATTCTGCAGCAAATCATCCCC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	402	0.0025	20	c.42 others(31): Show c.4219_*4238dupGGGGATGATTTGCTGCAGAA	ARFIP2	ENSG00000132254.13	transcript	ENST00000396777.8	protein_coding		3644		chr11	TogoVar
ARG1_chr6_131568226_131589329	131584816	T T	TACACACA others(13): Show TACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02647.hp1 HG03195.hp2 HG02647.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	2	420	0.0048	20	c.90 others(29): Show c.908_*909insACACACACACACACACACAC	ARG1	ENSG00000118520.16	transcript	ENST00000368087.8	protein_coding		488		chr6	TogoVar
ARG2_chr14_67614920_67656708	67627256	G G	GATATATA others(13): Show GATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02109.hp2 NA19030.hp2 HG00639.hp2 HG02109.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0001 a0001c0001t0003 a0001c0001t0006	a0001c0001t0001g0172 a0001c0001t0003g0061 a0001c0001t0006g0218 a0001c0001t0001g0172 a0001c0001t0003g0061 a0001c0001t0006g0218	3	438	0.0069	20	c.184 others(37): Show c.184+6297_184+6316dupATATATATATATATATATAT	ARG2	ENSG00000081181.8	transcript	ENST00000261783.4	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr14	TogoVar
ARGFX_chr3_121562949_121595622	121576707	T T	TTCTCTTT others(13): Show TTCTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0310 a0001c0001t0018g0310	1	410	0.0024	20	c.104 others(33): Show c.104-76_104-75insCTCTTTCTTTCTTTCTTTCT	ARGFX	ENSG00000186103.5	transcript	ENST00000334384.5	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARGFX_chr3_121562949_121595622	121576707	T T	TTTTCTTT others(13): Show TTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02109.hp1 NA18942.hp1 NA20129.hp2 HG02109.hp1 NA18942.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0017 a0001c0001t0012 a0001c0001t0017	a0001c0001t0012g0341 a0001c0001t0012g0344 a0001c0001t0017g0339 a0001c0001t0012g0341 a0001c0001t0012g0344 a0001c0001t0017g0339	3	410	0.0073	20	c.104 others(33): Show c.104-57_104-38dupCTTTCTTTCTTTCTTTCTTT	ARGFX	ENSG00000186103.5	transcript	ENST00000334384.5	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARGFX_chr3_121562949_121595622	121584204	G G	GAGGAAGC others(13): Show GAGGAAGCAAGGAAGGAAGGA	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01358.hp1 HG01952.hp1 others(2): Show HG01255.hp2 HG01358.hp1 HG01952.hp1 HG01981.hp2 HG03225.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0176 a0002c0002t0001g0195 a0002c0002t0001g0203 others(2): Show a0002c0002t0001g0176 a0002c0002t0001g0195 a0002c0002t0001g0203 a0002c0002t0001g0205 a0002c0002t0001g0207	5	410	0.0122	20	c.221 others(35): Show c.221-707_221-706insCAAGGAAGGAAGGAAGGAAG	ARGFX	ENSG00000186103.5	transcript	ENST00000334384.5	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARGFX_chr3_121562949_121595622	121584204	G G	GAGGAAGG others(13): Show GAGGAAGGAAGGAAGGAAGGA	intron_variant intron_variant	MODIFIER	HG02071.hp1 HG02071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0040 a0001c0001t0002g0040	1	410	0.0024	20	c.221 others(35): Show c.221-667_221-648dupGGAAGGAAGGAAGGAAGGAA	ARGFX	ENSG00000186103.5	transcript	ENST00000334384.5	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARGLU1_chr13_106536673_106573137	106540792	C C	CTGGATGG others(13): Show CTGGATGGATGGATGGATGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02132.hp2 HG02257.hp1 NA18954.hp1 others(1): Show HG02132.hp2 HG02257.hp1 NA18954.hp1 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0016 a0001c0001t0002 a0001c0001t0007 a0001c0001t0016	a0001c0001t0002g0007 a0001c0001t0002g0080 a0001c0001t0007g0113 others(1): Show a0001c0001t0002g0007 a0001c0001t0002g0080 a0001c0001t0007g0113 a0001c0001t0016g0085	4	376	0.0106	20	c.32 others(31): Show c.3203_*3204insTCCATCCATCCATCCATCCA	ARGLU1	ENSG00000134884.15	transcript	ENST00000400198.8	protein_coding		880		chr13	TogoVar
ARHGAP10_chr4_147727088_148077776	147784805	T T	TATTATAA others(13): Show TATTATAAAATATATATTATA	intron_variant intron_variant	MODIFIER	HG01891.hp1 NA19064.hp1 NA19087.hp2 HG01891.hp1 NA19064.hp1 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0069 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0069	3	106	0.0283	20	c.155 others(39): Show c.155-37921_155-37920insTTATAAAATATATATTATAA	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	147837643	G G	GTTTTTTT others(13): Show GTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02451.hp1 HG03130.hp1 HG02109.hp2 HG02451.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0046 a0001c0001t0001g0103 a0001c0001t0001g0104	3	106	0.0283	20	c.313 others(37): Show c.313-9489_313-9488insTTTTTTTTTTTTTTTTTTTT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	3/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	147873681	A A	AACACACA others(13): Show AACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG04184.hp2 NA18906.hp1 HG04184.hp2 NA18906.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0004c0010 a0001c0002 a0004c0010	a0001c0002t0001 a0004c0010t0001 a0001c0002t0001 a0004c0010t0001	a0001c0002t0001g0033 a0004c0010t0001g0048 a0001c0002t0001g0033 a0004c0010t0001g0048	2	106	0.0189	20	c.703 others(37): Show c.703-1317_703-1298dupACACACACACACACACACAC	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	147877819	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0045 a0001c0004t0001g0045	1	106	0.0094	20	c.833 others(37): Show c.833-1398_833-1397insTTTTTTTTTTTTTTTTTTTT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	8/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148017652	C C	CTATATAT others(13): Show CTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0060 a0001c0008t0001g0060	1	106	0.0094	20	c.171 others(39): Show c.1717-5599_1717-5580dupATATATATATATATATATAT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148017680	A A	ATATATAT others(13): Show ATATATATATATATATATGAG	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	106	0.0094	20	c.171 others(39): Show c.1717-5580_1717-5579insATATATATATATATGAGTAT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148017682	A A	ATATATAT others(13): Show ATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	106	0.0094	20	c.171 others(39): Show c.1717-5580_1717-5579insATATATATATATATATATGT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148043614	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01261.hp2 HG02055.hp1 others(3): Show HG01243.hp2 HG01261.hp2 HG02055.hp1 HG02896.hp1 NA18522.hp1 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0009t0001 a0001c0001t0001 a0001c0009t0001	a0001c0001t0001g0002 a0001c0001t0001g0018 a0001c0001t0001g0055 others(3): Show a0001c0001t0001g0002 a0001c0001t0001g0018 a0001c0001t0001g0055 a0001c0001t0001g0075 a0001c0001t0001g0089 a0001c0009t0001g0007	6	106	0.0566	20	c.186 others(39): Show c.1868-3259_1868-3240dupATATATATATATATATATAT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	19/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP12_chr10_31800398_31933831	31920449	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0042 a0001c0001t0024g0042	1	322	0.0031	20	c.-11 others(39): Show c.-111+8214_-111+8233dupTTTTTTTTTTTTTTTTTTTT	ARHGAP12	ENSG00000165322.18	transcript	ENST00000344936.7	protein_coding	1/19			chr10	TogoVar
ARHGAP12_chr10_31800398_31933831	31933240	A A	ATATATAT others(13): Show ATATATATATATATATATATC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp2 HG01168.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0037 a0001c0001t0004g0037	1	322	0.0031	20	c.-46 others(31): Show c.-4669_-4668insGATATATATATATATATATA	ARHGAP12	ENSG00000165322.18	transcript	ENST00000344936.7	protein_coding		4410		chr10	TogoVar
ARHGAP15_chr2_143124419_143773352	143165960	G G	GAGAAAGA others(13): Show GAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG06807.hp1 NA18612.hp1 HG06807.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0074 a0001c0001t0001g0094 a0001c0001t0001g0074 a0001c0001t0001g0094	2	162	0.0124	20	c.165 others(39): Show c.165+10330_165+10349dupAGAAAGAAAGAAAGAAAGAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143166001	A A	AGAAAGAA others(13): Show AGAAAGAAAGAAAGAAGGAAG	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01243.hp1 HG02145.hp2 others(12): Show HG01069.hp2 HG01243.hp1 HG02145.hp2 HG02280.hp2 HG02809.hp2 HG03195.hp2 HG03704.hp1 HG04115.hp1 HG06807.hp2 NA18612.hp2 NA18955.hp1 NA18966.hp2 NA18986.hp2 NA18991.hp1 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0002t0002 a0002c0004t0001 a0001c0001t0001 a0001c0002t0002 a0002c0004t0001	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0033 others(12): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0056 a0001c0001t0001g0091 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0133 a0001c0001t0001g0148 a0001c0001t0001g0152 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0002t0002g0059 a0002c0004t0001g0060	15	162	0.0926	20	c.165 others(39): Show c.165+10349_165+10350insAGAAAGAAAGAAGGAAGGAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143166001	A A	AGAAAGAA others(13): Show AGAAAGAAAGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG03139.hp2 HG02976.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0099 a0001c0001t0001g0100	2	162	0.0124	20	c.165 others(39): Show c.165+10349_165+10350insAGAAAGAAGGAAGGAAGGAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143166001	A A	AGAAGGAA others(13): Show AGAAGGAAGGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0032	1	162	0.0062	20	c.165 others(39): Show c.165+10361_165+10362insGGAAGGAAGGAAGGAAGGAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143320405	C C	CCCCCCCG others(13): Show CCCCCCCGCCCCCCCCCCCCG	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0070 a0001c0001t0001g0070	1	162	0.0062	20	c.474 others(39): Show c.474+69807_474+69808insCCCCGCCCCCCCCCCCCGCC	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGCG others(13): Show TGTGTGCGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00738.hp1 HG00741.hp2 others(4): Show HG00621.hp2 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG03225.hp1 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0031 a0001c0001t0001g0113 others(4): Show a0001c0001t0001g0015 a0001c0001t0001g0031 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0137 a0001c0001t0001g0146 a0001c0001t0001g0160	7	162	0.0432	20	c.475 others(39): Show c.475-21634_475-21633insTGTGCGCGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(13): Show TGTGTGTGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG03942.hp1 HG01255.hp2 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0109 a0001c0001t0001g0154 a0001c0001t0001g0109 a0001c0001t0001g0154	2	162	0.0124	20	c.475 others(39): Show c.475-21634_475-21633insTGTGTGCGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(13): Show TGTGTGTGTGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02300.hp2 HG02723.hp2 HG03710.hp2 others(5): Show HG02300.hp2 HG02723.hp2 HG03710.hp2 NA18948.hp2 NA18975.hp2 NA19062.hp2 NA19068.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0047 a0001c0001t0001g0049 others(5): Show a0001c0001t0001g0037 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0064 a0001c0001t0001g0068 a0001c0001t0001g0081 a0001c0001t0001g0118	8	162	0.0494	20	c.475 others(39): Show c.475-21634_475-21633insTGTGTGTGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(13): Show TGTGTGTGTGTGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0106 a0001c0001t0001g0106	1	162	0.0062	20	c.475 others(39): Show c.475-21634_475-21633insTGTGTGTGTGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143439422	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG04115.hp2 HG01081.hp1 HG04115.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0108 a0001c0001t0001g0161 a0001c0001t0001g0108 a0001c0001t0001g0161	2	162	0.0124	20	c.703 others(37): Show c.703+2387_703+2406dupAAAAAAAAAAAAAAAAAAAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	8/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143656934	G G	GGTGTGTG others(13): Show GGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03486.hp1 NA18947.hp1 NA18991.hp2 HG03486.hp1 NA18947.hp1 NA18991.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0086 a0001c0001t0001g0097 a0001c0001t0001g0115 a0001c0001t0001g0086 a0001c0001t0001g0097 a0001c0001t0001g0115	3	162	0.0185	20	c.113 others(41): Show c.1138+32688_1138+32707dupGTGTGTGTGTGTGTGTGTGT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673746	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG03491.hp1 HG00738.hp1 HG03491.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0151 a0001c0001t0001g0031 a0001c0001t0001g0151	2	162	0.0124	20	c.113 others(41): Show c.1139-29672_1139-29671insATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673756	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18962.hp1 NA18962.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0116 a0001c0001t0001g0116	1	162	0.0062	20	c.113 others(41): Show c.1139-29662_1139-29661insATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02071.hp1 HG02698.hp2 HG01081.hp2 HG02071.hp1 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0028 a0001c0001t0001g0045 a0001c0002t0001g0125 a0001c0001t0001g0028 a0001c0001t0001g0045 a0001c0002t0001g0125	3	162	0.0185	20	c.113 others(41): Show c.1139-29654_1139-29635dupTATATATATATATATATATA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTGTATAT others(13): Show GTGTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01496.hp1 HG01358.hp2 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0145 a0001c0001t0001g0147 a0001c0001t0001g0145 a0001c0001t0001g0147	2	162	0.0124	20	c.113 others(41): Show c.1139-29660_1139-29659insGTATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTGTGTAT others(13): Show GTGTGTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03490.hp1 HG03490.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0131 a0001c0001t0001g0131	1	162	0.0062	20	c.113 others(41): Show c.1139-29660_1139-29659insGTGTATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP17_chr16_24914389_25020369	24950836	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02970.hp2 NA19030.hp1 HG02723.hp1 HG02970.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0233 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0233	3	240	0.0125	20	c.104 others(39): Show c.1047-1372_1047-1353dupTTTTTTTTTTTTTTTTTTTT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	12/19			chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	25020176	A A	AAAGGAAG others(13): Show AAAGGAAGGAAGGATGGAAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0229 a0001c0001t0001g0229	1	240	0.0042	20	c.-49 others(31): Show c.-4916_-4915insCCTTCCATCCTTCCTTCCTT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		4808		chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	25020190	C C	CGGAAGGA others(13): Show CGGAAGGAAGGAAGGAAGGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	240	0.0042	20	c.-49 others(31): Show c.-4930_-4929insTTCCTTCCTTCCTTCCTTCC	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		4822		chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	25020228	G G	GAAGGAAG others(13): Show GAAGGAAGGAAGGAAGAAAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp1 HG01496.hp1 HG02809.hp1 others(3): Show HG01243.hp1 HG01496.hp1 HG02809.hp1 HG02886.hp1 HG03041.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 a0001c0001 a0001c0003 a0001c0005	a0001c0001t0001 a0001c0003t0003 a0001c0005t0001 a0001c0001t0001 a0001c0003t0003 a0001c0005t0001	a0001c0001t0001g0020 a0001c0003t0003g0211 a0001c0003t0003g0212 others(3): Show a0001c0001t0001g0020 a0001c0003t0003g0211 a0001c0003t0003g0212 a0001c0003t0003g0214 a0001c0003t0003g0218 a0001c0005t0001g0213	6	240	0.0250	20	c.-49 others(31): Show c.-4968_-4967insTCTTTCTTCCTTCCTTCCTT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		4860		chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	25020228	G G	GAAGGAAG others(13): Show GAAGGAAGGAAGGAAGGAAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG01099.hp1 HG01243.hp2 others(12): Show HG00642.hp1 HG01099.hp1 HG01243.hp2 HG01993.hp2 HG02109.hp1 HG02559.hp1 HG02809.hp2 HG03654.hp1 NA18955.hp1 NA18962.hp2 NA18983.hp2 NA18994.hp2 NA19002.hp2 NA19081.hp2 NA19082.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0001 a0001c0001t0001g0056 a0001c0001t0001g0057 others(10): Show a0001c0001t0001g0001 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0065 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0087 a0001c0001t0001g0095 a0001c0001t0001g0102 a0001c0001t0001g0106 a0001c0001t0007g0018	15	240	0.0625	20	c.-49 others(31): Show c.-4968_-4967insTCTTCCTTCCTTCCTTCCTT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		4860		chr16	TogoVar
ARHGAP19_chr10_97217179_97297637	97251530	G G	GGGGAGGG others(13): Show GGGGAGGGGAAGGGAGGGGAA	intron_variant intron_variant	MODIFIER	HG03492.hp2 HG03492.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0002 a0002c0004t0002	a0002c0004t0002g0176 a0002c0004t0002g0176	1	242	0.0041	20	c.927 others(37): Show c.927+4787_927+4788insTTCCCCTCCCTTCCCCTCCC	ARHGAP19	ENSG00000213390.11	transcript	ENST00000358531.9	protein_coding	6/11			chr10	TogoVar
ARHGAP19_chr10_97217179_97297637	97251541	G G	GGGGAGGG others(13): Show GGGGAGGGAAGGGGAGGGGAA	intron_variant intron_variant	MODIFIER	NA18946.hp2 NA18946.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0088 a0001c0003t0003g0088	1	242	0.0041	20	c.927 others(37): Show c.927+4776_927+4777insTTCCCCTCCCCTTCCCTCCC	ARHGAP19	ENSG00000213390.11	transcript	ENST00000358531.9	protein_coding	6/11			chr10	TogoVar
ARHGAP20_chr11_110572043_110717437	110585408	C C	CCTTGGTT others(13): Show CCTTGGTTTCTGGTGTCTTCA	intron_variant intron_variant	MODIFIER	HG03491.hp1 HG03688.hp1 NA19030.hp2 others(1): Show HG03491.hp1 HG03688.hp1 NA19030.hp2 NA19067.hp1	a0003 a0008 a0003 a0008	a0003c0004 a0008c0017 a0003c0004 a0008c0017	a0003c0004t0002 a0003c0004t0017 a0008c0017t0002 a0003c0004t0002 a0003c0004t0017 a0008c0017t0002	a0003c0004t0002g0144 a0003c0004t0002g0162 a0003c0004t0017g0145 others(1): Show a0003c0004t0002g0144 a0003c0004t0002g0162 a0003c0004t0017g0145 a0008c0017t0002g0141	4	226	0.0177	20	c.141 others(37): Show c.1415+788_1415+807dupTGAAGACACCAGAAACCAAG	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	12/14			chr11	TogoVar
ARHGAP20_chr11_110572043_110717437	110618161	G G	GAAAAAAA others(13): Show GAAAAAAAATGTCAGCATAGA	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0215 a0001c0002t0005g0215	1	226	0.0044	20	c.504 others(37): Show c.504-2568_504-2567insTCTATGCTGACATTTTTTTT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	4/14			chr11	TogoVar
ARHGAP20_chr11_110572043_110717437	110658780	A A	ATTGTTTT others(13): Show ATTGTTTTGTTTTGTTTTGTT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03540.hp2 HG02622.hp2 HG03540.hp2	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0010 a0006c0007t0010	a0006c0007t0010g0147 a0006c0007t0010g0148 a0006c0007t0010g0147 a0006c0007t0010g0148	2	226	0.0089	20	c.189 others(39): Show c.189-27989_189-27988insAACAAAACAAAACAAAACAA	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP20_chr11_110572043_110717437	110687035	C C	CATATATA others(13): Show CATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00735.hp2 HG01952.hp2 others(5): Show HG00621.hp1 HG00735.hp2 HG01952.hp2 HG02004.hp2 HG02135.hp2 HG03225.hp2 HG03831.hp1 NA19009.hp2	a0001 a0002 a0013 a0001 a0002 a0013	a0001c0001 a0001c0002 a0002c0014 others(1): Show a0001c0001 a0001c0002 a0002c0014 a0013c0021	a0001c0001t0001 a0001c0001t0004 a0001c0002t0005 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0005 a0002c0014t0019 a0013c0021t0005	a0001c0001t0001g0139 a0001c0001t0001g0171 a0001c0001t0001g0183 others(5): Show a0001c0001t0001g0139 a0001c0001t0001g0171 a0001c0001t0001g0183 a0001c0001t0001g0192 a0001c0001t0004g0146 a0001c0002t0005g0211 a0002c0014t0019g0207 a0013c0021t0005g0220	8	226	0.0354	20	c.188 others(37): Show c.188+3492_188+3511dupATATATATATATATATATAT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(13): Show ATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0195 a0001c0001t0001g0195	1	352	0.0028	20	c.495 others(37): Show c.495+1013_495+1014insAATATATATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar

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