Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHRM3_chr1_239381568_239920450	239385815	C C	CTCTTTCT others(13): Show CTCTTTCTTTCTTTCTTTCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02738.hp1 HG03098.hp2 NA20129.hp1 HG02738.hp1 HG03098.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0016 a0001c0001t0021 a0001c0001t0001 a0001c0001t0016 a0001c0001t0021	a0001c0001t0001g0098 a0001c0001t0016g0114 a0001c0001t0021g0093 a0001c0001t0001g0098 a0001c0001t0016g0114 a0001c0001t0021g0093	3	116	0.0259	20	c.-19 others(31): Show c.-1933_-1932insTCTTTCTTTCTTTCTTTCTT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		752		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404410	A A	AAGAAAGA others(13): Show AAGAAAGAAAGAAAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	116	0.0086	20	c.-52 others(41): Show c.-521+17184_-521+17185insGAAAGAAAGAAAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404410	A A	AAGAGAAA others(13): Show AAGAGAAAGAAAGAAAGAAGG	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0035 a0001c0001t0004g0035	1	116	0.0086	20	c.-52 others(41): Show c.-521+17184_-521+17185insGAGAAAGAAAGAAAGAAGGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239407417	T T	TATATATA others(13): Show TATATATATATATATAGAGAG	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0103 a0001c0001t0010g0103	1	116	0.0086	20	c.-52 others(41): Show c.-521+20191_-521+20192insTATATATATATATAGAGAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239580689	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01346.hp2 HG02040.hp1 others(3): Show HG00140.hp2 HG01346.hp2 HG02040.hp1 HG03927.hp1 NA18944.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0022 a0001c0001t0023	a0001c0001t0001g0083 a0001c0001t0001g0109 a0001c0001t0002g0006 others(3): Show a0001c0001t0001g0083 a0001c0001t0001g0109 a0001c0001t0002g0006 a0001c0001t0003g0047 a0001c0001t0022g0008 a0001c0001t0023g0007	6	116	0.0517	20	c.-31 others(41): Show c.-313+34956_-313+34957insTATATATATATATATATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239600797	T T	TTTCCTTC others(13): Show TTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0019 a0001c0001t0021g0019	1	116	0.0086	20	c.-31 others(41): Show c.-312-31421_-312-31402dupTCCTTCCTTCCTTCCTTCCT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239602090	A A	ATATGTGT others(13): Show ATATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0007 a0001c0001t0023g0007	1	116	0.0086	20	c.-31 others(41): Show c.-312-30133_-312-30132insATGTGTGTGTGTGTGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239634373	A A	AAATGAAA others(13): Show AAATGAAAGAAAGAAAGACAG	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00609.hp2 HG00738.hp2 others(9): Show HG00609.hp1 HG00609.hp2 HG00738.hp2 HG01346.hp2 HG02040.hp1 HG02040.hp2 HG02083.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp2 HG03710.hp1 NA19068.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0014 a0001c0001t0016 a0001c0001t0022 a0001c0001t0024 a0001c0001t0043 a0002c0002t0002	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0058 others(9): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0058 a0001c0001t0002g0061 a0001c0001t0003g0047 a0001c0001t0006g0003 a0001c0001t0014g0075 a0001c0001t0016g0114 a0001c0001t0022g0008 a0001c0001t0024g0088 a0001c0001t0043g0046 a0002c0002t0002g0012	12	116	0.1035	20	c.-25 others(39): Show c.-250+2089_-250+2090insTGAAAGAAAGAAAGACAGAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239634376	C C	CGAAAGAA others(13): Show CGAAAGAAAGAAAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0054 a0001c0001t0054	a0001c0001t0054g0096 a0001c0001t0054g0096	1	116	0.0086	20	c.-25 others(39): Show c.-250+2100_-250+2119dupAAAGAAAGAAAGAAAGAAAG	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239679027	G G	GGATAGAT others(13): Show GGATAGATAGATAGATAGATA	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0019 a0001c0001t0021g0019	1	116	0.0086	20	c.-14 others(37): Show c.-147+752_-147+771dupGATAGATAGATAGATAGATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239684748	G G	GAGAAAGA others(13): Show GAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0095 a0001c0001t0014g0095	1	116	0.0086	20	c.-14 others(39): Show c.-147+6464_-147+6483dupAAGAAAGAAAGAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239793803	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0039 a0001c0001t0003g0039	1	116	0.0086	20	c.-14 others(41): Show c.-146-33443_-146-33424dupTTTTTTTTTTTTTTTTTTTT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239874285	G G	GTATATAT others(13): Show GTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG03209.hp2 HG02723.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0039 a0001c0001t0006g0044 a0001c0001t0003g0039 a0001c0001t0006g0044	2	116	0.0172	20	c.-19 others(39): Show c.-19-33125_-19-33106dupTATATATATATATATATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM5_chr15_33963497_34072458	34053317	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0062 a0001c0001t0006g0062	1	338	0.0030	20	c.-76 others(37): Show c.-76+6447_-76+6448insTATATATATATATATATATA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34053319	A A	AAAAAAAA others(13): Show AAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0283 a0001c0001t0006g0283	1	338	0.0030	20	c.-76 others(37): Show c.-76+6449_-76+6450insAAAAAAAAAATATATATATA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34053319	A A	AAAAAAAA others(13): Show AAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG06807.hp1 HG02280.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0281 a0001c0001t0006g0282 a0001c0001t0006g0281 a0001c0001t0006g0282	2	338	0.0059	20	c.-76 others(37): Show c.-76+6449_-76+6450insAAAAAAAATATATATATATA	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34053319	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0018 a0001c0001t0006g0018	1	338	0.0030	20	c.-76 others(37): Show c.-76+6453_-76+6472dupATATATATATATATATATAT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA10_chr11_3660587_3676384	3663033	A A	ATCATCTC others(13): Show ATCATCTCATCTCATCTCATC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 NA18957.hp2 NA18959.hp2 HG00099.hp1 NA18957.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	3	450	0.0067	20	c.30 others(31): Show c.3054_*3073dupGATGAGATGAGATGAGATGA	CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding		2553		chr11	TogoVar
CHRNA10_chr11_3660587_3676384	3663089	A A	ATCATCTC others(13): Show ATCATCTCATCTCATCTCATC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19004.hp2 NA19079.hp2 NA19004.hp2 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0002 a0001c0001t0001g0003	2	450	0.0044	20	c.29 others(31): Show c.2998_*3017dupGATGAGATGAGATGAGATGA	CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding		2497		chr11	TogoVar
CHRNA4_chr20_63338223_63366349	63353917	T T	TAGAGGGA others(13): Show TAGAGGGACCTGTGGTCCTGG	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG01258.hp1 HG02015.hp1 others(15): Show HG00544.hp2 HG01258.hp1 HG02015.hp1 HG02129.hp2 HG02630.hp2 HG03017.hp2 HG03239.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp2 HG03834.hp1 HG04115.hp1 HG04204.hp2 HG04228.hp2 NA18612.hp2 NA18747.hp2 NA19043.hp2 NA19064.hp2	a0001 a0014 a0015 a0001 a0014 a0015	a0001c0003 a0001c0004 a0014c0023 others(1): Show a0001c0003 a0001c0004 a0014c0023 a0015c0009	a0001c0003t0005 a0001c0004t0005 a0001c0004t0007 others(4): Show a0001c0003t0005 a0001c0004t0005 a0001c0004t0007 a0001c0004t0021 a0001c0004t0037 a0014c0023t0007 a0015c0009t0005	a0001c0003t0005g0128 a0001c0004t0005g0012 a0001c0004t0005g0013 others(13): Show a0001c0003t0005g0128 a0001c0004t0005g0012 a0001c0004t0005g0013 a0001c0004t0005g0107 a0001c0004t0005g0137 a0001c0004t0005g0138 a0001c0004t0005g0144 a0001c0004t0007g0106 a0001c0004t0007g0135 a0001c0004t0007g0136 a0001c0004t0007g0142 a0001c0004t0007g0143 a0001c0004t0021g0095 a0001c0004t0037g0147 a0014c0023t0007g0145 a0015c0009t0005g0105	18	168	0.1071	20	c.383 others(37): Show c.383+2057_383+2058insCCAGGACCACAGGTCCCTCT	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	4/5			chr20	TogoVar
CHRNA4_chr20_63338223_63366349	63359903	G G	GTGTGTGT others(13): Show GTGTGTGTGCCGGGCGTGCGC	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00609.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0123 a0001c0001t0003g0123	1	168	0.0060	20	c.77- others(33): Show c.77-205_77-204insGCGCACGCCCGGCACACACA	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	1/5			chr20	TogoVar
CHRNA4_chr20_63338223_63366349	63359905	G G	GTGTGTGT others(13): Show GTGTGTGTGCCGGGCGTGCGC	intron_variant intron_variant	MODIFIER	HG02129.hp1 HG02129.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0074 a0001c0005t0001g0074	1	168	0.0060	20	c.77- others(33): Show c.77-207_77-206insGCGCACGCCCGGCACACACA	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	1/5			chr20	TogoVar
CHRNA4_chr20_63338223_63366349	63359907	G G	GTGTGTGT others(13): Show GTGTGTGTGCCGGGCGTGCGC	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0023 a0001c0006t0023	a0001c0006t0023g0035 a0001c0006t0023g0035	1	168	0.0060	20	c.77- others(33): Show c.77-209_77-208insGCGCACGCCCGGCACACACA	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	1/5			chr20	TogoVar
CHRNA4_chr20_63338223_63366349	63366169	A A	AGTGCTCC others(13): Show AGTGCTCCCTGCCCTCTCCTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0092 a0001c0001t0004g0092	1	168	0.0060	20	c.-50 others(31): Show c.-5024_-5005dupCAGGAGAGGGCAGGGAGCAC	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding		4821		chr20	TogoVar
CHRNA4_chr20_63338223_63366349	63366189	G G	GGTGCTCC others(13): Show GGTGCTCCCTGCCCTCTCCTA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0014 a0001c0003t0002g0014	1	168	0.0060	20	c.-50 others(31): Show c.-5044_-5025dupTAGGAGAGGGCAGGGAGCAC	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding		4841		chr20	TogoVar
CHRNA5_chr15_78560520_78600269	78570424	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01123.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0219 a0001c0001t0012g0219	1	382	0.0026	20	c.106 others(37): Show c.106+4605_106+4624dupTTTTTTTTTTTTTTTTTTTT	CHRNA5	ENSG00000169684.13	transcript	ENST00000299565.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32044253	C C	CTCCTTCC others(13): Show CTCCTTCCTTCCTTCCTTCCT	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00621.hp2 HG00642.hp2 others(21): Show HG00558.hp2 HG00621.hp2 HG00642.hp2 HG01952.hp2 HG02056.hp1 HG02074.hp2 HG02109.hp1 HG02129.hp1 HG02451.hp2 HG02602.hp2 HG02723.hp1 HG02895.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG03486.hp1 HG03654.hp2 HG06807.hp2 NA18986.hp1 NA18991.hp2 NA18994.hp1 NA19068.hp1 NA19086.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0009 a0001c0011 a0001c0012	a0001c0001t0001 a0001c0001t0008 a0001c0001t0009 others(12): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0009 a0001c0001t0013 a0001c0001t0030 a0001c0002t0002 a0001c0002t0005 a0001c0002t0006 a0001c0003t0001 a0001c0004t0003 a0001c0004t0041 a0001c0006t0002 a0001c0009t0001 a0001c0011t0026 a0001c0012t0001	a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0223 others(21): Show a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0223 a0001c0001t0001g0286 a0001c0001t0008g0038 a0001c0001t0008g0224 a0001c0001t0009g0203 a0001c0001t0013g0204 a0001c0001t0013g0205 a0001c0001t0030g0257 a0001c0002t0002g0256 a0001c0002t0002g0260 a0001c0002t0005g0177 a0001c0002t0006g0126 a0001c0003t0001g0230 a0001c0003t0001g0258 a0001c0003t0001g0259 a0001c0003t0001g0261 a0001c0004t0003g0125 a0001c0004t0041g0037 a0001c0006t0002g0221 a0001c0009t0001g0127 a0001c0011t0026g0211 a0001c0012t0001g0128	24	307	0.0782	20	c.195 others(39): Show c.195+13231_195+13250dupCTTCCTTCCTTCCTTCCTTC	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32098871	A A	AACACACA others(13): Show AACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18982.hp2 NA18991.hp1 NA18982.hp2 NA18991.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0029 a0001c0002t0002g0284 a0001c0001t0001g0029 a0001c0002t0002g0284	2	307	0.0065	20	c.196 others(37): Show c.196-2413_196-2394dupACACACACACACACACACAC	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32138731	A A	ATGTTTTG others(13): Show ATGTTTTGTTTTGTTTTGTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00609.hp2 HG00621.hp2 others(16): Show HG00438.hp2 HG00609.hp2 HG00621.hp2 HG01106.hp1 HG01361.hp2 HG02109.hp1 HG02451.hp2 HG02970.hp1 HG03017.hp2 HG04184.hp1 HG04184.hp2 NA18946.hp1 NA18956.hp2 NA18979.hp2 NA18981.hp2 NA18991.hp2 NA18999.hp1 NA19057.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006	a0001c0001t0001 a0001c0001t0012 a0001c0001t0047 others(8): Show a0001c0001t0001 a0001c0001t0012 a0001c0001t0047 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0006 a0001c0003t0001 a0001c0003t0021 a0001c0004t0003 a0001c0006t0034	a0001c0001t0001g0022 a0001c0001t0001g0286 a0001c0001t0012g0291 others(16): Show a0001c0001t0001g0022 a0001c0001t0001g0286 a0001c0001t0012g0291 a0001c0001t0047g0106 a0001c0002t0001g0020 a0001c0002t0002g0028 a0001c0002t0002g0138 a0001c0002t0002g0217 a0001c0002t0002g0260 a0001c0002t0002g0299 a0001c0002t0005g0177 a0001c0002t0006g0010 a0001c0002t0006g0126 a0001c0002t0006g0178 a0001c0003t0001g0042 a0001c0003t0001g0281 a0001c0003t0021g0274 a0001c0004t0003g0133 a0001c0006t0034g0247	19	307	0.0619	20	c.351 others(39): Show c.351-15155_351-15136dupTGTTTTGTTTTGTTTTGTTT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	4/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA9_chr4_40330333_40360217	40350693	T T	TACACACA others(13): Show TACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01168.hp1 HG01099.hp1 HG01168.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0003 a0001c0005t0003	a0001c0005t0003g0038 a0001c0005t0003g0038	2	420	0.0048	20	c.898 others(37): Show c.898+1294_898+1313dupACACACACACACACACACAC	CHRNA9	ENSG00000174343.6	transcript	ENST00000310169.3	protein_coding	4/4		INFO_REALIGN_3_PRIME	chr4	TogoVar
CHRNB4_chr15_78619111_78646210	78626341	G G	GGGGTGTG others(13): Show GGGGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0060 a0001c0005t0001g0060	1	416	0.0024	20	c.133 others(39): Show c.1339-1051_1339-1050insACACACACACACACACACCC	CHRNB4	ENSG00000117971.12	transcript	ENST00000261751.8	protein_coding	5/5			chr15	TogoVar
CHRNE_chr17_4892771_4908098	4899425	A A	AGCCCCAC others(13): Show AGCCCCACCCCGACCCGGGCT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0090 a0001c0001t0055g0090	1	446	0.0022	20	c.103 others(35): Show c.1032+23_1032+42dupAGCCCGGGTCGGGGTGGGGC	CHRNE	ENSG00000108556.10	transcript	ENST00000649488.2	protein_coding	9/11			chr17	TogoVar
CHST11_chr12_104451948_104767014	104475658	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01168.hp2 HG01169.hp2 others(8): Show HG00099.hp2 HG01168.hp2 HG01169.hp2 HG01257.hp1 HG01361.hp2 HG02258.hp1 NA18943.hp2 NA18993.hp1 NA19060.hp2 NA19081.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0010 a0001c0001t0047	a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0164 others(8): Show a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0164 a0001c0001t0001g0166 a0001c0001t0003g0030 a0001c0001t0003g0073 a0001c0001t0004g0029 a0001c0001t0005g0165 a0001c0001t0006g0133 a0001c0001t0010g0012 a0001c0001t0047g0017	11	240	0.0458	20	c.118 others(39): Show c.118+18143_118+18162dupATATATATATATATATATAT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104475688	A A	ATATATAT others(13): Show ATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01071.hp1 HG01192.hp1 others(13): Show HG00558.hp1 HG01071.hp1 HG01192.hp1 HG01256.hp1 HG01256.hp2 HG01978.hp1 HG02040.hp2 HG02135.hp2 HG02257.hp1 HG03017.hp2 HG03225.hp2 NA18985.hp2 NA19057.hp1 NA19057.hp2 NA19077.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(7): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0010 a0001c0001t0032 a0001c0001t0039 a0001c0001t0041 a0001c0001t0046 a0001c0001t0061	a0001c0001t0001g0060 a0001c0001t0001g0078 a0001c0001t0001g0088 others(13): Show a0001c0001t0001g0060 a0001c0001t0001g0078 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0107 a0001c0001t0003g0090 a0001c0001t0003g0129 a0001c0001t0004g0063 a0001c0001t0008g0155 a0001c0001t0010g0014 a0001c0001t0010g0123 a0001c0001t0032g0093 a0001c0001t0039g0092 a0001c0001t0041g0001 a0001c0001t0046g0079 a0001c0001t0061g0091	16	240	0.0667	20	c.118 others(39): Show c.118+18162_118+18163insATATATATATATATATTTAT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104475689	T T	TATATATA others(13): Show TATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0176 a0001c0001t0014g0176	1	240	0.0042	20	c.118 others(39): Show c.118+18162_118+18163insATATATATATATATATAAAT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104519071	G G	GGTGTGTG others(13): Show GGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02895.hp1 HG02965.hp1 others(3): Show HG01496.hp2 HG02895.hp1 HG02965.hp1 HG03139.hp1 HG03195.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0012 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0012 a0001c0001t0029 a0001c0001t0055	a0001c0001t0001g0213 a0001c0001t0002g0149 a0001c0001t0002g0199 others(3): Show a0001c0001t0001g0213 a0001c0001t0002g0149 a0001c0001t0002g0199 a0001c0001t0012g0177 a0001c0001t0029g0212 a0001c0001t0055g0219	6	240	0.0250	20	c.118 others(39): Show c.118+61557_118+61576dupGTGTGTGTGTGTGTGTGTGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104544138	A A	AAAAGAAA others(13): Show AAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02258.hp2 HG02698.hp2 HG02257.hp1 HG02258.hp2 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0039 a0001c0001t0043 a0001c0001t0007 a0001c0001t0039 a0001c0001t0043	a0001c0001t0007g0008 a0001c0001t0039g0092 a0001c0001t0043g0187 a0001c0001t0007g0008 a0001c0001t0039g0092 a0001c0001t0043g0187	3	240	0.0125	20	c.119 others(39): Show c.119-57742_119-57723dupAAGAAAGAAAGAAAGAAAGA	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104544180	A A	AAGAAAGA others(13): Show AAGAAAGAAAGAAAGAAAGAC	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG03486.hp2 HG02970.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0053 a0001c0001t0038 a0001c0001t0053	a0001c0001t0038g0068 a0001c0001t0053g0057 a0001c0001t0038g0068 a0001c0001t0053g0057	2	240	0.0083	20	c.119 others(39): Show c.119-57723_119-57722insAAGAAAGAAAGAAAGACAGA	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104590013	T T	TTAAATAA others(13): Show TTAAATAAATAAATAAATAAA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0015 a0001c0001t0017g0015	1	240	0.0042	20	c.119 others(39): Show c.119-11887_119-11868dupAAATAAATAAATAAATAAAT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104722155	A A	AGTGTGTG others(13): Show AGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0220 a0001c0001t0002g0220	1	240	0.0042	20	c.205 others(39): Show c.205-34779_205-34760dupGTGTGTGTGTGTGTGTGTGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104750428	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02135.hp1 NA18948.hp2 others(1): Show HG01081.hp2 HG02135.hp1 NA18948.hp2 NA18986.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0069	a0001c0001t0001g0033 a0001c0001t0003g0040 a0001c0001t0007g0153 others(1): Show a0001c0001t0001g0033 a0001c0001t0003g0040 a0001c0001t0007g0153 a0001c0001t0069g0102	4	240	0.0167	20	c.205 others(37): Show c.205-6512_205-6493dupTTTTTTTTTTTTTTTTTTTT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104756532	G G	GGTGTGTG others(13): Show GGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01496.hp1 HG01255.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0156 a0001c0001t0002g0083 a0001c0001t0001g0156 a0001c0001t0002g0083	2	240	0.0083	20	c.205 others(35): Show c.205-406_205-387dupGTGTGTGTGTGTGTGTGTGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104761464	T T	TACACACA others(13): Show TACACACACACACACACACAC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02257.hp1 HG02615.hp2 HG02257.hp1 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0050 a0001c0001t0039 a0001c0001t0050	a0001c0001t0039g0092 a0001c0001t0050g0148 a0001c0001t0039g0092 a0001c0001t0050g0148	2	240	0.0083	20	c.36 others(31): Show c.3679_*3698dupCACACACACACACACACACA	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	3/3	3699	INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST5_chr16_75523530_75541108	75525914	A A	AAAACAAA others(13): Show AAAACAAACAAACAAACAAAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02630.hp1 HG02896.hp1 HG02897.hp1 others(1): Show HG02630.hp1 HG02896.hp1 HG02897.hp1 HG02965.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0009 a0001c0004t0009	a0001c0004t0009g0017 a0001c0004t0009g0034 a0001c0004t0009g0017 a0001c0004t0009g0034	4	394	0.0102	20	c.32 others(31): Show c.3234_*3235insGTTTGTTTGTTTGTTTGTTT	CHST5	ENSG00000135702.15	transcript	ENST00000336257.8	protein_coding		2615		chr16	TogoVar
CHST6_chr16_75467052_75500441	75491190	A A	AAAAAATA others(13): Show AAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG01517.hp1 HG01516.hp2 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0004 a0001c0001t0010g0004	2	371	0.0054	20	c.-92 others(37): Show c.-92+3749_-92+3750insATATATATATATATATTTTT	CHST6	ENSG00000183196.10	transcript	ENST00000332272.9	protein_coding	1/2			chr16	TogoVar
CHST8_chr19_33616953_33778506	33694093	C C	CATATATA others(13): Show CATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18954.hp1 NA18954.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0119	1	254	0.0039	20	c.130 others(37): Show c.130+4720_130+4739dupTATATATATATATATATATA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33695821	C C	CTTTCTTT others(13): Show CTTTCTTTCTTTCTTTCTTTT	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01515.hp2 HG01517.hp2 others(3): Show HG01099.hp1 HG01515.hp2 HG01517.hp2 HG02683.hp2 HG03704.hp2 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0238 a0001c0001t0001g0252 a0001c0001t0002g0047 others(3): Show a0001c0001t0001g0238 a0001c0001t0001g0252 a0001c0001t0002g0047 a0001c0001t0003g0041 a0001c0001t0004g0002 a0001c0001t0004g0006	6	254	0.0236	20	c.130 others(37): Show c.130+6433_130+6434insCTTTCTTTCTTTCTTTTTTT	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33757387	G G	GAAGAAAG others(13): Show GAAGAAAGAAAGAAAGAAAGA	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	254	0.0039	20	c.131 others(39): Show c.131-13909_131-13890dupAAGAAAGAAAGAAAGAAAGA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33757522	G G	GAAAGAAA others(13): Show GAAAGAAAGAAAGAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02818.hp2 NA19004.hp2 HG02818.hp2 NA19004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0199 a0001c0001t0002g0052 a0001c0001t0001g0199 a0001c0001t0002g0052	2	254	0.0079	20	c.131 others(39): Show c.131-13890_131-13889insAAGAAAGAAAGAGAAAGAAA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33757522	G G	GAGAGAGA others(13): Show GAGAGAGAGAGAGAGAGAGAA	intron_variant intron_variant	MODIFIER	NA18954.hp2 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0069	1	254	0.0039	20	c.131 others(39): Show c.131-13888_131-13887insGAGAGAGAGAGAGAGAAAGA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar

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