Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRN2_chr1_204612170_204690738	204652263	C C	CCCCCGCC others(14): Show CCCCCGCCCCCCCGCCCCCCCG	intron_variant intron_variant	MODIFIER	NA18960.hp2 NA18973.hp1 NA18960.hp2 NA18973.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0026 a0002c0003t0003g0100 a0002c0003t0003g0026 a0002c0003t0003g0100	2	328	0.0061	21	c.-22 others(42): Show c.-226-32046_-226-32045insCGGGGGGGCGGGGGGGCGGGG	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN4CL_chr11_62681406_62694530	62682710	T T	TAATTACA others(14): Show TAATTACAGGCGTGAGTGCTGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01070.hp1 HG01071.hp1 HG01070.hp1 HG01071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0002	2	348	0.0058	21	c.50 others(32): Show c.5081_*5082insCCAGCACTCACGCCTGTAATT	LRRN4CL	ENSG00000177363.5	transcript	ENST00000317449.5	protein_coding		3695		chr11	TogoVar
LRRTM3_chr10_66921036_67106551	66978544	A A	ATATATAT others(14): Show ATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0184 a0001c0001t0001g0184	1	294	0.0034	21	c.153 others(42): Show c.1536+50092_1536+50093insTATATATATATATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar
LRRTM4_chr2_76742685_77527376	77362115	G G	GAGAAAGA others(14): Show GAGAAAGAAAGAAAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0115 a0001c0001t0004g0115	1	128	0.0078	21	c.155 others(44): Show c.1551+156182_1551+156202dupTTTCTTTCTTTCTTTCTTTCT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LSAMP_chr3_115797374_116450487	116164576	T T	TATATATA others(14): Show TATATATATATATATAATCCAA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00733.hp1 HG01433.hp1 others(11): Show HG00558.hp1 HG00733.hp1 HG01433.hp1 HG01433.hp2 HG01884.hp2 HG02109.hp1 HG02109.hp2 HG02258.hp2 HG02523.hp1 HG02922.hp1 HG03041.hp1 HG03453.hp1 HG03540.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(11): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0010 a0001c0001t0011 a0001c0001t0023 a0001c0001t0030 a0001c0001t0034 a0001c0001t0037 a0001c0001t0041 a0001c0001t0042 a0001c0001t0055 a0001c0001t0071	a0001c0001t0002g0014 a0001c0001t0003g0078 a0001c0001t0005g0048 others(11): Show a0001c0001t0002g0014 a0001c0001t0003g0078 a0001c0001t0005g0048 a0001c0001t0006g0065 a0001c0001t0010g0054 a0001c0001t0011g0095 a0001c0001t0023g0077 a0001c0001t0030g0028 a0001c0001t0034g0018 a0001c0001t0037g0087 a0001c0001t0041g0021 a0001c0001t0042g0022 a0001c0001t0055g0019 a0001c0001t0071g0045	14	104	0.1346	21	c.156 others(40): Show c.156-78021_156-78020insTTGGATTATATATATATATAT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG03139.hp2 NA18966.hp1 HG01884.hp1 HG03139.hp2 NA18966.hp1	a0001 a0001	a0001c0003 a0001c0007 a0001c0003 a0001c0007	a0001c0003t0002 a0001c0007t0033 a0001c0003t0002 a0001c0007t0033	a0001c0003t0002g0160 a0001c0007t0033g0346 a0001c0007t0033g0347 a0001c0003t0002g0160 a0001c0007t0033g0346 a0001c0007t0033g0347	3	408	0.0074	21	c.227 others(38): Show c.227-1371_227-1370insATTTTTTTTTTTTTTTTTTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0033 a0001c0007t0033	a0001c0007t0033g0345 a0001c0007t0033g0345	1	408	0.0025	21	c.227 others(38): Show c.227-1371_227-1370insATATTTTTTTTTTTTTTTTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSM10_chr1_36388436_36402908	36402885	T T	TATATATA others(14): Show TATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	432	0.0023	21	c.-51 others(32): Show c.-5144_-5143insTATATATATATATATATATAT	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4978		chr1	TogoVar
LSM5_chr7_32480338_32495380	32484734	C C	CAACTACG others(14): Show CAACTACGTAGGACTACAGGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0046 a0001c0001t0004g0046	1	444	0.0023	21	c.25 others(32): Show c.2526_*2527insCACCTGTAGTCCTACGTAGTT	LSM5	ENSG00000106355.10	transcript	ENST00000450169.7	protein_coding		603		chr7	TogoVar
LSP1_chr11_1848084_1897263	1874251	G G	GGGGCAGT others(14): Show GGGGCAGTGTTGGGGACAGTGA	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02886.hp2 HG03130.hp2 others(1): Show HG02451.hp2 HG02886.hp2 HG03130.hp2 HG03540.hp2	a0003 a0007 a0003 a0007	a0003c0004 a0007c0014 a0003c0004 a0007c0014	a0003c0004t0001 a0003c0004t0003 a0007c0014t0003 a0003c0004t0001 a0003c0004t0003 a0007c0014t0003	a0003c0004t0001g0195 a0003c0004t0003g0187 a0003c0004t0003g0196 others(1): Show a0003c0004t0001g0195 a0003c0004t0003g0187 a0003c0004t0003g0196 a0007c0014t0003g0199	4	360	0.0111	21	c.54- others(36): Show c.54-5830_54-5829insTGTTGGGGACAGTGAGGGCAG	LSP1	ENSG00000130592.17	transcript	ENST00000311604.8	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr11	TogoVar
LSR_chr19_35244002_35272964	35251843	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01123.hp1 HG01175.hp2 others(14): Show HG01099.hp1 HG01123.hp1 HG01175.hp2 HG01361.hp1 HG02300.hp2 HG02683.hp2 HG03017.hp1 HG03453.hp1 HG03540.hp2 HG03654.hp1 HG03927.hp1 HG04204.hp2 NA18522.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 homoSapiens_chm13v2.hp1	a0002 a0003 a0002 a0003	a0002c0001 a0003c0012 a0002c0001 a0003c0012	a0002c0001t0001 a0003c0012t0001 a0002c0001t0001 a0003c0012t0001	a0002c0001t0001g0017 a0002c0001t0001g0025 a0002c0001t0001g0052 others(8): Show a0002c0001t0001g0017 a0002c0001t0001g0025 a0002c0001t0001g0052 a0002c0001t0001g0183 a0002c0001t0001g0184 a0002c0001t0001g0185 a0002c0001t0001g0194 a0002c0001t0001g0201 a0002c0001t0001g0202 a0002c0001t0001g0204 a0003c0012t0001g0205	17	438	0.0388	21	c.454 others(38): Show c.454+1193_454+1194insTTTTTTTTTTTTTTTTTTTTT	LSR	ENSG00000105699.17	transcript	ENST00000605618.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP1_chr2_32941953_33404509	33004786	A A	ATATATAT others(14): Show ATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03516.hp2 NA18944.hp2 HG03516.hp2 NA18944.hp2	a0001 a0001	a0001c0001 a0001c0054 a0001c0001 a0001c0054	a0001c0001t0003 a0001c0054t0001 a0001c0001t0003 a0001c0054t0001	a0001c0001t0003g0129 a0001c0054t0001g0003 a0001c0001t0003g0129 a0001c0054t0001g0003	2	164	0.0122	21	c.566 others(40): Show c.566-16123_566-16122insTATATATATATATATATATAT	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	2/33			chr2	TogoVar
LTBP1_chr2_32941953_33404509	33228697	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG03098.hp1 HG03471.hp1 others(1): Show HG02257.hp1 HG03098.hp1 HG03471.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0045 a0001c0047 others(1): Show a0001c0001 a0001c0045 a0001c0047 a0001c0054	a0001c0001t0011 a0001c0045t0001 a0001c0047t0001 others(1): Show a0001c0001t0011 a0001c0045t0001 a0001c0047t0001 a0001c0054t0001	a0001c0001t0011g0006 a0001c0045t0001g0090 a0001c0047t0001g0160 others(1): Show a0001c0001t0011g0006 a0001c0045t0001g0090 a0001c0047t0001g0160 a0001c0054t0001g0003	4	164	0.0244	21	c.187 others(40): Show c.1876+6547_1876+6567dupTTTTTTTTTTTTTTTTTTTTT	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	9/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33328162	T T	TAAATAAA others(14): Show TAAATAAATAAATAAATAAATA	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0002 a0002	a0002c0009 a0002c0009	a0002c0009t0012 a0002c0009t0012	a0002c0009t0012g0159 a0002c0009t0012g0159	1	164	0.0061	21	c.373 others(42): Show c.3730+12900_3730+12901insTAAATAAATAAATAAAATAAA	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	24/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP2_chr14_74493183_74617237	74604164	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01978.hp1 HG02155.hp1 others(15): Show HG01081.hp1 HG01978.hp1 HG02155.hp1 HG02300.hp2 HG02809.hp2 HG02897.hp2 HG02922.hp2 HG03490.hp1 NA18952.hp2 NA18977.hp2 NA18998.hp1 NA19011.hp1 NA19011.hp2 NA19077.hp2 NA19079.hp1 NA19081.hp2 NA19084.hp1 NA20129.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0007	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0047 a0002c0004 a0002c0006 a0002c0007 a0002c0015 a0003c0005 a0007c0012	a0001c0001t0005 a0001c0002t0004 a0001c0003t0006 others(8): Show a0001c0001t0005 a0001c0002t0004 a0001c0003t0006 a0001c0047t0001 a0002c0004t0004 a0002c0004t0014 a0002c0006t0006 a0002c0007t0004 a0002c0015t0007 a0003c0005t0004 a0007c0012t0016	a0001c0001t0005g0015 a0001c0002t0004g0039 a0001c0003t0006g0027 others(15): Show a0001c0001t0005g0015 a0001c0002t0004g0039 a0001c0003t0006g0027 a0001c0047t0001g0119 a0002c0004t0004g0010 a0002c0004t0004g0028 a0002c0004t0004g0030 a0002c0004t0004g0031 a0002c0004t0004g0033 a0002c0004t0014g0032 a0002c0006t0006g0045 a0002c0007t0004g0006 a0002c0007t0004g0034 a0002c0007t0004g0042 a0002c0015t0007g0117 a0002c0015t0007g0118 a0003c0005t0004g0040 a0007c0012t0016g0029	18	282	0.0638	21	c.495 others(36): Show c.495-460_495-459insTTTTTTTTTTTTTTTTTTTTT	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	1/35			chr14	TogoVar
LTBP2_chr14_74493183_74617237	74604164	C C	CAAACAAA others(14): Show CAAACAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG03579.hp1 HG02970.hp1 HG03579.hp1	a0002 a0004 a0002 a0004	a0002c0014 a0004c0019 a0002c0014 a0004c0019	a0002c0014t0005 a0004c0019t0005 a0002c0014t0005 a0004c0019t0005	a0002c0014t0005g0019 a0004c0019t0005g0018 a0002c0014t0005g0019 a0004c0019t0005g0018	2	282	0.0071	21	c.495 others(36): Show c.495-460_495-459insTTTTTTTTTTTTTTTTTGTTT	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	1/35			chr14	TogoVar
LTBP4_chr19_40596369_40634818	40625326	T T	TTTTTTTT others(14): Show TTTTTTTTTTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0290 a0001c0006t0001g0290	1	338	0.0030	21	c.383 others(38): Show c.3833-530_3833-529insTTTTTTTTTTTTTTTTTTTGT	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding	26/29		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP4_chr19_40596369_40634818	40630113	A A	ATTTTTTT others(14): Show ATTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0092 a0002c0002t0002g0092	1	338	0.0030	21	c.56 others(30): Show c.563_*564insTTTTTTTTTTTTTTTTTTTTT	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding		296		chr19	TogoVar
LTBP4_chr19_40596369_40634818	40634799	G G	GCATCATC others(14): Show GCATCATCATCATCATCATCAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0013 a0013	a0013c0022 a0013c0022	a0013c0022t0002 a0013c0022t0002	a0013c0022t0002g0175 a0013c0022t0002g0175	1	338	0.0030	21	c.52 others(32): Show c.5249_*5250insCATCATCATCATCATCATCAT	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding		4982		chr19	TogoVar
LTN1_chr21_28923144_28997877	28927499	A A	ATATATAT others(14): Show ATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp1 HG03195.hp2 NA18957.hp2 others(8): Show HG00558.hp1 HG03195.hp2 NA18957.hp2 NA18968.hp1 NA18968.hp2 NA18971.hp1 NA18972.hp1 NA18975.hp2 NA19005.hp1 NA19085.hp2 NA20905.hp2	a0003 a0004 a0005 a0003 a0004 a0005	a0003c0003 a0004c0005 a0005c0006 a0003c0003 a0004c0005 a0005c0006	a0003c0003t0001 a0004c0005t0001 a0005c0006t0001 a0003c0003t0001 a0004c0005t0001 a0005c0006t0001	a0003c0003t0001g0001 a0003c0003t0001g0005 a0003c0003t0001g0169 others(6): Show a0003c0003t0001g0001 a0003c0003t0001g0005 a0003c0003t0001g0169 a0003c0003t0001g0180 a0004c0005t0001g0041 a0004c0005t0001g0078 a0005c0006t0001g0145 a0005c0006t0001g0156 a0005c0006t0001g0194	11	404	0.0272	21	c.29 others(32): Show c.2948_*2949insATATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		644		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(14): Show ATATATATATATATATATATTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02015.hp1 HG02886.hp1 HG03834.hp2 HG02015.hp1 HG02886.hp1 HG03834.hp2	a0003 a0009 a0003 a0009	a0003c0003 a0009c0012 a0003c0003 a0009c0012	a0003c0003t0001 a0009c0012t0001 a0003c0003t0001 a0009c0012t0001	a0003c0003t0001g0027 a0003c0003t0001g0177 a0009c0012t0001g0082 a0003c0003t0001g0027 a0003c0003t0001g0177 a0009c0012t0001g0082	3	404	0.0074	21	c.29 others(32): Show c.2946_*2947insAAATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(14): Show ATATATATATATATATATTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18963.hp1 NA19078.hp2 NA18963.hp1 NA19078.hp2	a0003 a0004 a0003 a0004	a0003c0003 a0004c0005 a0003c0003 a0004c0005	a0003c0003t0004 a0004c0005t0009 a0003c0003t0004 a0004c0005t0009	a0003c0003t0004g0151 a0004c0005t0009g0018 a0003c0003t0004g0151 a0004c0005t0009g0018	2	404	0.0050	21	c.29 others(32): Show c.2946_*2947insAAAAATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(14): Show ATATATATATATATATTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19063.hp2 NA19063.hp2	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0067 a0004c0005t0001g0067	1	404	0.0025	21	c.29 others(32): Show c.2946_*2947insAAAAAAATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LUC7L2_chr7_139354894_139428454	139399449	A A	ATTTTTTT others(14): Show ATTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18987.hp1 NA18987.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0244 a0001c0001t0001g0244	1	276	0.0036	21	c.255 others(36): Show c.255+770_255+790dupTTTTTTTTTTTTTTTTTTTTT	LUC7L2	ENSG00000146963.18	transcript	ENST00000354926.9	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr7	TogoVar
LUC7L_chr16_183990_234449	186051	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0201	1	350	0.0029	21	c.31 others(32): Show c.3146_*3147insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2938		chr16	TogoVar
LUC7L_chr16_183990_234449	186051	G G	GGAGGAAC others(14): Show GGAGGAACAGTGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01515.hp2 HG01515.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	350	0.0029	21	c.31 others(32): Show c.3146_*3147insTCCCCCGTGTCACTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2938		chr16	TogoVar
LUC7L_chr16_183990_234449	186102	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18999.hp1 NA19054.hp1 NA19063.hp2 others(2): Show NA18999.hp1 NA19054.hp1 NA19063.hp2 NA19077.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0268 a0001c0001t0001g0271 a0001c0001t0001g0274 others(2): Show a0001c0001t0001g0268 a0001c0001t0001g0271 a0001c0001t0001g0274 a0001c0001t0001g0282 a0001c0001t0001g0300	5	350	0.0143	21	c.30 others(32): Show c.3095_*3096insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2887		chr16	TogoVar
LUC7L_chr16_183990_234449	186119	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0286 a0001c0001t0001g0286	1	350	0.0029	21	c.30 others(32): Show c.3078_*3079insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2870		chr16	TogoVar
LUC7L_chr16_183990_234449	186136	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0292 a0001c0001t0001g0292	1	350	0.0029	21	c.30 others(32): Show c.3061_*3062insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2853		chr16	TogoVar
LUC7L_chr16_183990_234449	186153	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0288 a0001c0001t0001g0288	1	350	0.0029	21	c.30 others(32): Show c.3044_*3045insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2836		chr16	TogoVar
LUC7L_chr16_183990_234449	186272	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00597.hp2 NA18999.hp1 HG00597.hp2 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0271 a0001c0001t0002g0341 a0001c0001t0001g0271 a0001c0001t0002g0341	2	350	0.0057	21	c.29 others(32): Show c.2925_*2926insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2717		chr16	TogoVar
LUC7L_chr16_183990_234449	186306	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0283 a0001c0001t0001g0283	1	350	0.0029	21	c.28 others(32): Show c.2891_*2892insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2683		chr16	TogoVar
LUC7L_chr16_183990_234449	186323	G G	GGGGGAAC others(14): Show GGGGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0175 a0001c0005t0001g0175	1	350	0.0029	21	c.28 others(32): Show c.2874_*2875insTCCCCCGTGTCGCTGTTCCCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2666		chr16	TogoVar
LUC7L_chr16_183990_234449	186408	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0267 a0001c0001t0001g0267	1	350	0.0029	21	c.27 others(32): Show c.2789_*2790insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2581		chr16	TogoVar
LUC7L_chr16_183990_234449	186425	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0340 a0001c0001t0002g0340	1	350	0.0029	21	c.27 others(32): Show c.2772_*2773insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2564		chr16	TogoVar
LUC7L_chr16_183990_234449	186476	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19054.hp1 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0274 a0001c0001t0001g0274	1	350	0.0029	21	c.27 others(32): Show c.2721_*2722insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2513		chr16	TogoVar
LUC7L_chr16_183990_234449	186527	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0161 a0001c0001t0001g0161	1	350	0.0029	21	c.26 others(32): Show c.2670_*2671insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2462		chr16	TogoVar
LUC7L_chr16_183990_234449	186595	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19009.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0294 a0001c0001t0001g0294	1	350	0.0029	21	c.26 others(32): Show c.2602_*2603insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2394		chr16	TogoVar
LUC7L_chr16_183990_234449	186679	G G	GAGGGAGG others(14): Show GAGGGAGGAACAGCGACACGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02300.hp1 HG02300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0304 a0001c0001t0001g0304	1	350	0.0029	21	c.25 others(32): Show c.2518_*2519insTCCGTGTCGCTGTTCCTCCCT	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2310		chr16	TogoVar
LUC7L_chr16_183990_234449	186799	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	350	0.0029	21	c.23 others(32): Show c.2398_*2399insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2190		chr16	TogoVar
LUC7L_chr16_183990_234449	186833	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0288 a0001c0001t0001g0288	1	350	0.0029	21	c.23 others(32): Show c.2364_*2365insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2156		chr16	TogoVar
LUC7L_chr16_183990_234449	186850	G G	GGGAACAG others(14): Show GGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0333 a0001c0001t0001g0333	1	350	0.0029	21	c.23 others(32): Show c.2347_*2348insTCCCTCCCGTGTCGCTGTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2139		chr16	TogoVar
LUC7L_chr16_183990_234449	186867	G G	GGAGGAAC others(14): Show GGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00597.hp2 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0341 a0001c0001t0002g0341	1	350	0.0029	21	c.23 others(32): Show c.2330_*2331insTCCCCCGTGTCGCTGTTCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2122		chr16	TogoVar
LUC7L_chr16_183990_234449	186952	G G	GGGAACAG others(14): Show GGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01256.hp2 HG01256.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0290 a0001c0001t0001g0290	1	350	0.0029	21	c.22 others(32): Show c.2245_*2246insTCCCTCCCGTGTCGCTGTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2037		chr16	TogoVar
LUC7L_chr16_183990_234449	187122	G G	GGGAACAG others(14): Show GGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18949.hp2 NA19081.hp1 NA18949.hp2 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0162 a0001c0001t0002g0339 a0001c0001t0001g0162 a0001c0001t0002g0339	2	350	0.0057	21	c.20 others(32): Show c.2075_*2076insTCCCTCCCGTGTCGCTGTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1867		chr16	TogoVar
LUC7L_chr16_183990_234449	187173	G G	GGGAACAG others(14): Show GGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0306 a0001c0001t0001g0306	1	350	0.0029	21	c.20 others(32): Show c.2024_*2025insTCCCTCCCGTGTCGCTGTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1816		chr16	TogoVar
LUC7L_chr16_183990_234449	187190	G G	GGGAACAG others(14): Show GGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp2 HG00621.hp2 HG00642.hp2 others(3): Show HG00558.hp2 HG00621.hp2 HG00642.hp2 HG01258.hp1 HG02080.hp1 NA19070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0291 others(3): Show a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0291 a0001c0001t0001g0293 a0001c0001t0001g0299 a0001c0001t0001g0305	6	350	0.0171	21	c.20 others(32): Show c.2007_*2008insTCCCTCCCGTGTCGCTGTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1799		chr16	TogoVar
LUC7L_chr16_183990_234449	188349	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp2 HG00423.hp2 HG00544.hp2 others(32): Show HG00408.hp2 HG00423.hp2 HG00544.hp2 HG00597.hp2 HG01109.hp2 HG01496.hp1 HG02055.hp1 HG02129.hp2 HG02145.hp1 HG02148.hp2 HG02257.hp2 HG02717.hp1 HG02738.hp1 HG02738.hp2 HG02886.hp2 HG02897.hp1 HG02897.hp2 HG03139.hp2 HG03195.hp2 HG03225.hp1 HG03688.hp1 HG03704.hp2 HG03831.hp1 NA18942.hp1 NA18950.hp2 NA18957.hp2 NA18965.hp2 NA18969.hp1 NA18970.hp2 NA18995.hp1 NA19010.hp2 NA19067.hp2 NA19080.hp2 NA20129.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 others(32): Show a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0034 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0164 a0001c0001t0001g0179 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0196 a0001c0001t0001g0199 a0001c0001t0001g0203 a0001c0001t0001g0269 a0001c0001t0001g0273 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0285 a0001c0001t0001g0287 a0001c0001t0001g0296 a0001c0001t0001g0298 a0001c0001t0001g0302 a0001c0001t0001g0303 a0001c0001t0001g0306 a0001c0001t0001g0307 a0001c0001t0001g0308 a0001c0001t0001g0309 a0001c0001t0001g0320 a0001c0001t0001g0334 a0001c0001t0002g0341 a0001c0001t0003g0335	35	350	0.1000	21	c.84 others(30): Show c.848_*849insTTTTTTTTTTTTTTTTTTTTT	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		640		chr16	TogoVar
LURAP1L_chr9_12770020_12828060	12786582	A A	ATATATAT others(14): Show ATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0070 a0001c0001t0001g0070	1	418	0.0024	21	c.312 others(40): Show c.312+10555_312+10556insTATATATATATATATATATAT	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1			chr9	TogoVar
LURAP1L_chr9_12770020_12828060	12788187	G G	GAAAGAAA others(14): Show GAAAGAAAGAAAGAAAGAAAGA	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG06807.hp2 HG02965.hp1 HG06807.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0002 a0002c0002t0001 a0002c0002t0002	a0002c0002t0001g0262 a0002c0002t0002g0292 a0002c0002t0001g0262 a0002c0002t0002g0292	2	418	0.0048	21	c.312 others(40): Show c.312+12167_312+12168insGAAAGAAAGAAAGAAAAGAAA	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar

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