Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SASH1_chr6_148337838_148557044	148387640	C C	CTTCCTTC others(14): Show CTTCCTTCCTTCCTTCCTTCCT	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02056.hp2 HG02683.hp1 others(4): Show HG01433.hp2 HG02056.hp2 HG02683.hp1 HG03490.hp2 HG03492.hp1 HG06807.hp2 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0007 a0002c0002 others(1): Show a0001c0001 a0001c0007 a0002c0002 a0003c0006	a0001c0001t0001 a0001c0001t0002 a0001c0007t0005 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0007t0005 a0002c0002t0001 a0002c0002t0004 a0003c0006t0001	a0001c0001t0001g0179 a0001c0001t0002g0106 a0001c0007t0005g0062 others(4): Show a0001c0001t0001g0179 a0001c0001t0002g0106 a0001c0007t0005g0062 a0002c0002t0001g0045 a0002c0002t0004g0080 a0003c0006t0001g0060 a0003c0006t0001g0072	7	322	0.0217	21	c.157 others(38): Show c.157-2492_157-2491insCCTTCCTTCCTTCCTTCCTTT	SASH1	ENSG00000111961.19	transcript	ENST00000367467.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
SASH1_chr6_148337838_148557044	148387644	C C	CTTCCTTC others(14): Show CTTCCTTCCTTCCTTCCTTCCT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0158 a0002c0002t0004g0158	1	322	0.0031	21	c.157 others(38): Show c.157-2488_157-2487insCCTTCCTTCCTTCCTTCCTTT	SASH1	ENSG00000111961.19	transcript	ENST00000367467.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
SASH1_chr6_148337838_148557044	148421149	G G	GGAAGGAA others(14): Show GGAAGGAAGGAAGGAAGGAAGA	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0163 a0002c0002t0003g0163	1	322	0.0031	21	c.286 others(40): Show c.286-19035_286-19034insGAAGGAAGGAAGGAAGGAAGA	SASH1	ENSG00000111961.19	transcript	ENST00000367467.8	protein_coding	2/19			chr6	TogoVar
SASH1_chr6_148337838_148557044	148449078	C C	CTTTTTCT others(14): Show CTTTTTCTTTTTTTTTTTTCTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02723.hp2 HG02976.hp2 others(3): Show HG01891.hp2 HG02723.hp2 HG02976.hp2 HG03471.hp2 NA19043.hp1 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0002c0004	a0001c0001t0005 a0001c0001t0007 a0001c0003t0005 others(3): Show a0001c0001t0005 a0001c0001t0007 a0001c0003t0005 a0001c0003t0007 a0002c0002t0004 a0002c0004t0015	a0001c0001t0005g0269 a0001c0001t0007g0064 a0001c0003t0005g0306 others(3): Show a0001c0001t0005g0269 a0001c0001t0007g0064 a0001c0003t0005g0306 a0001c0003t0007g0270 a0002c0002t0004g0080 a0002c0004t0015g0293	6	322	0.0186	21	c.386 others(38): Show c.386+8676_386+8677insCTTTTTTTTTTTTCTTTTTTT	SASH1	ENSG00000111961.19	transcript	ENST00000367467.8	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
SASH1_chr6_148337838_148557044	148456873	C C	CAATAATA others(14): Show CAATAATAATAATAATAATAAT	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00733.hp1 HG01943.hp2 others(2): Show HG00609.hp2 HG00733.hp1 HG01943.hp2 HG03017.hp1 HG03239.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0025 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0025 a0002c0002t0004	a0001c0001t0001g0030 a0001c0001t0002g0142 a0001c0001t0002g0153 others(2): Show a0001c0001t0001g0030 a0001c0001t0002g0142 a0001c0001t0002g0153 a0001c0001t0025g0005 a0002c0002t0004g0208	5	322	0.0155	21	c.387 others(40): Show c.387-11664_387-11644dupATAATAATAATAATAATAATA	SASH1	ENSG00000111961.19	transcript	ENST00000367467.8	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
SASH3_chrX_129774949_129800201	129789105	A A	AGAAAGAA others(14): Show AGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0091 a0001c0001t0002g0091	1	307	0.0033	21	c.300 others(36): Show c.300+528_300+529insGAAAGAAAGAAAGAAAGAAAG	SASH3	ENSG00000122122.10	transcript	ENST00000356892.4	protein_coding	3/7			chrX	TogoVar
SATB1_chr3_18340377_18430339	18344358	A A	ATTTTTTT others(14): Show ATTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0166 a0001c0001t0003g0166	1	352	0.0028	21	c.47 others(32): Show c.4791_*4811dupAAAAAAAAAAAAAAAAAAAAA	SATB1	ENSG00000182568.18	transcript	ENST00000338745.11	protein_coding		1018		chr3	TogoVar
SATL1_chrX_85087284_85248779	85118087	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00642.hp1 HG01071.hp2 others(34): Show HG00609.hp1 HG00642.hp1 HG01071.hp2 HG01192.hp1 HG01433.hp1 HG01943.hp1 HG02027.hp1 HG02040.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02738.hp1 HG02922.hp1 HG03098.hp1 HG03453.hp1 HG03486.hp2 HG03492.hp1 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03710.hp1 HG03831.hp2 HG03834.hp1 NA18747.hp1 NA18906.hp2 NA18943.hp1 NA18948.hp1 NA18954.hp1 NA18962.hp1 NA18964.hp1 NA18965.hp1 NA18990.hp1 NA18998.hp1 NA19007.hp1 NA19065.hp1 NA19083.hp1	a0001 a0007 a0010 a0001 a0007 a0010	a0001c0001 a0001c0007 a0007c0015 others(1): Show a0001c0001 a0001c0007 a0007c0015 a0010c0009	a0001c0001t0001 a0001c0001t0002 a0001c0007t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0007t0001 a0007c0015t0002 a0010c0009t0001	a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0107 others(34): Show a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0128 a0001c0001t0001g0147 a0001c0001t0001g0162 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0170 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0187 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0195 a0001c0001t0001g0199 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0214 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0228 a0001c0001t0002g0028 a0001c0001t0002g0038 a0001c0007t0001g0197 a0007c0015t0002g0048 a0010c0009t0001g0188	37	232	0.1595	21	c.-31 others(40): Show c.-312-8808_-312-8807insAAAAAAAAAAAAAAAAAAAAA	SATL1	ENSG00000184788.14	transcript	ENST00000644105.2	protein_coding	2/7			chrX	TogoVar
SAXO1_chr9_18922650_19038209	18980558	A A	AGAGGAGG others(14): Show AGAGGAGGAGGAGGAGGAGGAG	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0030 a0002c0002t0030	a0002c0002t0030g0237 a0002c0002t0030g0237	1	364	0.0028	21	c.39- others(38): Show c.39-29622_39-29621insCTCCTCCTCCTCCTCCTCCTC	SAXO1	ENSG00000155875.15	transcript	ENST00000380534.9	protein_coding	1/3			chr9	TogoVar
SBF2_chr11_9773668_10299219	9794676	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18952.hp2 NA18952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0130 a0001c0001t0001g0130	1	224	0.0045	21	c.457 others(40): Show c.4570+1134_4570+1154dupTTTTTTTTTTTTTTTTTTTTT	SBF2	ENSG00000133812.18	transcript	ENST00000256190.13	protein_coding	33/39			chr11	TogoVar
SBF2_chr11_9773668_10299219	10166989	A A	ACACACAC others(14): Show ACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG02004.hp2 HG00544.hp2 HG02004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0027 a0001c0001t0003g0031 a0001c0001t0003g0027 a0001c0001t0003g0031	2	224	0.0089	21	c.141 others(40): Show c.141+26912_141+26913insGTGTGTGTGTGTGTGTGTGTG	SBF2	ENSG00000133812.18	transcript	ENST00000256190.13	protein_coding	2/39			chr11	TogoVar
SBF2_chr11_9773668_10299219	10196866	A A	ATATATAT others(14): Show ATATATATATATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02970.hp1 HG02055.hp1 HG02970.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0209 a0001c0005t0001g0210 a0001c0005t0001g0209 a0001c0005t0001g0210	2	224	0.0089	21	c.56- others(36): Show c.56-2880_56-2879insAAAAAAAAAAATATATATATA	SBF2	ENSG00000133812.18	transcript	ENST00000256190.13	protein_coding	1/39			chr11	TogoVar
SBF2_chr11_9773668_10299219	10211014	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01109.hp2 HG01192.hp2 others(5): Show HG01099.hp1 HG01109.hp2 HG01192.hp2 HG01243.hp2 HG01256.hp1 HG01515.hp2 HG02055.hp1 HG02970.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0005 a0002c0002 others(1): Show a0001c0001 a0001c0005 a0002c0002 a0005c0006	a0001c0001t0001 a0001c0001t0004 a0001c0005t0001 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0005t0001 a0002c0002t0004 a0005c0006t0004	a0001c0001t0001g0211 a0001c0001t0004g0216 a0001c0001t0004g0219 others(5): Show a0001c0001t0001g0211 a0001c0001t0004g0216 a0001c0001t0004g0219 a0001c0005t0001g0209 a0001c0005t0001g0210 a0002c0002t0004g0215 a0005c0006t0004g0213 a0005c0006t0004g0217	8	224	0.0357	21	c.56- others(38): Show c.56-17048_56-17028dupTTTTTTTTTTTTTTTTTTTTT	SBF2	ENSG00000133812.18	transcript	ENST00000256190.13	protein_coding	1/39			chr11	TogoVar
SBF2_chr11_9773668_10299219	10254900	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0003 a0003c0004t0003	a0003c0004t0003g0138 a0003c0004t0003g0138	1	224	0.0045	21	c.55+ others(38): Show c.55+39094_55+39114dupTTTTTTTTTTTTTTTTTTTTT	SBF2	ENSG00000133812.18	transcript	ENST00000256190.13	protein_coding	1/39			chr11	TogoVar
SBNO1_chr12_123284109_123369847	123297400	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02257.hp2 HG02970.hp2 HG01884.hp1 HG02257.hp2 HG02970.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0012 a0001c0005t0016 a0001c0005t0012 a0001c0005t0016	a0001c0005t0012g0111 a0001c0005t0012g0114 a0001c0005t0016g0097 a0001c0005t0012g0111 a0001c0005t0012g0114 a0001c0005t0016g0097	3	260	0.0115	21	c.403 others(38): Show c.4039+557_4039+577dupTTTTTTTTTTTTTTTTTTTTT	SBNO1	ENSG00000139697.14	transcript	ENST00000602398.3	protein_coding	31/31			chr12	TogoVar
SBNO1_chr12_123284109_123369847	123307020	T T	TAAAAAAA others(14): Show TAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19063.hp2 NA19063.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0092 a0001c0002t0092	a0001c0002t0092g0226 a0001c0002t0092g0226	1	260	0.0039	21	c.363 others(40): Show c.3630+2269_3630+2289dupTTTTTTTTTTTTTTTTTTTTT	SBNO1	ENSG00000139697.14	transcript	ENST00000602398.3	protein_coding	28/31			chr12	TogoVar
SBNO2_chr19_1102638_1179268	1159522	T T	TGGGGACA others(14): Show TGGGGACAGCAGGGGACAGTGG	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG06807.hp1 HG02258.hp1 HG06807.hp1	a0001 a0001	a0001c0007 a0001c0020 a0001c0007 a0001c0020	a0001c0007t0001 a0001c0020t0001 a0001c0007t0001 a0001c0020t0001	a0001c0007t0001g0029 a0001c0020t0001g0028 a0001c0007t0001g0029 a0001c0020t0001g0028	2	203	0.0099	21	c.-12 others(40): Show c.-126-5141_-126-5121dupCCACTGTCCCCTGCTGTCCCC	SBNO2	ENSG00000064932.16	transcript	ENST00000361757.8	protein_coding	1/31			chr19	TogoVar
SBNO2_chr19_1102638_1179268	1164627	G G	GAGGAGGA others(14): Show GAGGAGGAGGAGGAGGAGGAAC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01168.hp2 NA20752.hp1 HG00639.hp1 HG01168.hp2 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0007 a0002c0003 a0001c0007 a0002c0003	a0001c0007t0001 a0002c0003t0001 a0001c0007t0001 a0002c0003t0001	a0001c0007t0001g0011 a0002c0003t0001g0009 a0002c0003t0001g0010 a0001c0007t0001g0011 a0002c0003t0001g0009 a0002c0003t0001g0010	3	203	0.0148	21	c.-12 others(40): Show c.-127+9524_-127+9544dupGTTCCTCCTCCTCCTCCTCCT	SBNO2	ENSG00000064932.16	transcript	ENST00000361757.8	protein_coding	1/31			chr19	TogoVar
SBSPON_chr8_73059543_73098172	73067607	A A	ATATATAT others(14): Show ATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG03098.hp2 HG03491.hp2 HG01884.hp1 HG03098.hp2 HG03491.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0002 a0003c0003t0006 a0003c0003t0026 a0002c0002t0002 a0003c0003t0006 a0003c0003t0026	a0002c0002t0002g0212 a0003c0003t0006g0096 a0003c0003t0026g0098 a0002c0002t0002g0212 a0003c0003t0006g0096 a0003c0003t0026g0098	3	414	0.0073	21	c.678 others(36): Show c.678-150_678-149insATATATATATATATATATATA	SBSPON	ENSG00000164764.11	transcript	ENST00000297354.7	protein_coding	4/4			chr8	TogoVar
SCAF4_chr21_31666000_31737118	31688114	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0023	1	352	0.0028	21	c.204 others(38): Show c.2043+172_2043+192dupTTTTTTTTTTTTTTTTTTTTT	SCAF4	ENSG00000156304.15	transcript	ENST00000286835.12	protein_coding	16/19			chr21	TogoVar
SCAI_chr9_124937608_125148528	125106096	C C	CACAAAAA others(14): Show CACAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18983.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0161 a0001c0001t0013g0161	1	306	0.0033	21	c.98+ others(38): Show c.98+36536_98+36537insTTTTTTTTTTTTTTTTTTTGT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAI_chr9_124937608_125148528	125106122	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	NA18953.hp2 NA18953.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	306	0.0033	21	c.98+ others(38): Show c.98+36510_98+36511insATTTTTTTTTTTTTTTTTTTT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAI_chr9_124937608_125148528	125106122	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	NA18973.hp2 NA18973.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0152 a0001c0001t0003g0152	1	306	0.0033	21	c.98+ others(38): Show c.98+36510_98+36511insATATTTTTTTTTTTTTTTTTT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAI_chr9_124937608_125148528	125106122	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAATATAT	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18981.hp2 NA18943.hp1 NA18981.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0002c0002t0001 a0001c0001t0003 a0002c0002t0001	a0001c0001t0003g0171 a0002c0002t0001g0261 a0001c0001t0003g0171 a0002c0002t0001g0261	2	306	0.0065	21	c.98+ others(38): Show c.98+36510_98+36511insATATATTTTTTTTTTTTTTTT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAI_chr9_124937608_125148528	125106122	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG03490.hp2 NA19060.hp2 others(1): Show HG01496.hp2 HG03490.hp2 NA19060.hp2 NA19080.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0001c0001t0074 a0002c0002t0001 a0001c0001t0003 a0001c0001t0074 a0002c0002t0001	a0001c0001t0003g0173 a0001c0001t0074g0172 a0002c0002t0001g0221 others(1): Show a0001c0001t0003g0173 a0001c0001t0074g0172 a0002c0002t0001g0221 a0002c0002t0001g0243	4	306	0.0131	21	c.98+ others(38): Show c.98+36510_98+36511insATATATATATTTTTTTTTTTT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAI_chr9_124937608_125148528	125106122	A A	AAAAAAAA others(14): Show AAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG00673.hp2 NA19007.hp2 HG00673.hp2 NA19007.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0237 a0002c0002t0001g0245 a0002c0002t0001g0237 a0002c0002t0001g0245	2	306	0.0065	21	c.98+ others(38): Show c.98+36510_98+36511insATATATATATATTTTTTTTTT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAI_chr9_124937608_125148528	125106122	A A	AAAAAAAA others(14): Show AAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00423.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0265 a0002c0002t0001g0265	1	306	0.0033	21	c.98+ others(38): Show c.98+36510_98+36511insATATATATATATATTTTTTTT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAI_chr9_124937608_125148528	125106122	A A	AAAAAAAT others(14): Show AAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0277 a0002c0002t0001g0277	1	306	0.0033	21	c.98+ others(38): Show c.98+36510_98+36511insATATATATATATATATTTTTT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAI_chr9_124937608_125148528	125106122	A A	AAAAATAT others(14): Show AAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0007 a0002c0002t0007	a0002c0002t0007g0263 a0002c0002t0007g0263	1	306	0.0033	21	c.98+ others(38): Show c.98+36510_98+36511insATATATATATATATATATTTT	SCAI	ENSG00000173611.18	transcript	ENST00000336505.11	protein_coding	2/17			chr9	TogoVar
SCAMP1_chr5_78355617_78485739	78404453	G G	GTTTTTTT others(14): Show GTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0128 a0001c0001t0022g0128	1	332	0.0030	21	c.136 others(40): Show c.136-11047_136-11046insTTTTTTTTTTTTTTTTTTTTT	SCAMP1	ENSG00000085365.18	transcript	ENST00000621999.5	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr5	TogoVar
SCAMP2_chr15_74838730_74878365	74874661	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02523.hp1 HG02523.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0033	a0001c0001t0033g0322 a0001c0001t0033g0322	1	386	0.0026	21	c.-14 others(32): Show c.-1407_-1406insATATATATTTTTTTTTTTTTT	SCAMP2	ENSG00000140497.16	transcript	ENST00000268099.13	protein_coding		1297		chr15	TogoVar
SCAMP2_chr15_74838730_74878365	74874661	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19091.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0001 a0001c0001t0003g0001	1	386	0.0026	21	c.-14 others(32): Show c.-1407_-1406insATATATATATTTTTTTTTTTT	SCAMP2	ENSG00000140497.16	transcript	ENST00000268099.13	protein_coding		1297		chr15	TogoVar
SCAMP2_chr15_74838730_74878365	74874661	A A	AAAAAAAA others(14): Show AAAAAAAAAAATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03239.hp1 NA19087.hp1 HG03239.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0342 a0001c0001t0003g0320 a0001c0001t0001g0342 a0001c0001t0003g0320	2	386	0.0052	21	c.-14 others(32): Show c.-1407_-1406insATATATATATATTTTTTTTTT	SCAMP2	ENSG00000140497.16	transcript	ENST00000268099.13	protein_coding		1297		chr15	TogoVar
SCAMP3_chr1_155250981_155267360	155252722	A A	ATATATAC others(14): Show ATATATACATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	375	0.0027	21	c.35 others(32): Show c.3550_*3551insATATATATATATATGTATATA	SCAMP3	ENSG00000116521.11	transcript	ENST00000302631.8	protein_coding		3258		chr1	TogoVar
SCAMP3_chr1_155250981_155267360	155252722	A A	ATATATAT others(14): Show ATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19012.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	375	0.0027	21	c.35 others(32): Show c.3550_*3551insATATATATATATATATATATA	SCAMP3	ENSG00000116521.11	transcript	ENST00000302631.8	protein_coding		3258		chr1	TogoVar
SCAMP3_chr1_155250981_155267360	155252723	T T	TATATATA others(14): Show TATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19085.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0006 a0001c0001t0003g0006	1	375	0.0027	21	c.35 others(32): Show c.3549_*3550insTATATATATATATATATATAT	SCAMP3	ENSG00000116521.11	transcript	ENST00000302631.8	protein_coding		3257		chr1	TogoVar
SCAMP4_chr19_1900399_1931013	1906865	A A	AATTGTGT others(14): Show AATTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG01978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0403 a0001c0001t0001g0403	1	442	0.0023	21	c.-42 others(38): Show c.-42+1426_-42+1427insATTGTGTGTGTGTGTGTGTGT	SCAMP4	ENSG00000227500.11	transcript	ENST00000316097.13	protein_coding	1/6			chr19	TogoVar
SCAMP4_chr19_1900399_1931013	1906866	T T	TTTGTGTG others(14): Show TTTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA19012.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0103 a0001c0001t0002g0103	1	442	0.0023	21	c.-42 others(38): Show c.-42+1428_-42+1429insTGTGTGTGTGTGTGTGTGTGT	SCAMP4	ENSG00000227500.11	transcript	ENST00000316097.13	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr19	TogoVar
SCAND1_chr20_35948624_35959502	35954523	A A	ACCCGGAA others(14): Show ACCCGGAAGCCGCTTGCGGGCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	374	0.0027	21	c.-15 others(30): Show c.-152_-132dupAGCCCGCAAGCGGCTTCCGGG	SCAND1	ENSG00000171222.11	transcript	ENST00000305978.7	protein_coding		22		chr20	TogoVar
SCAPER_chr15_76342904_76910340	76431676	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02451.hp2 HG02723.hp1 HG02109.hp2 HG02451.hp2 HG02723.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0130 a0001c0004t0001g0131 a0001c0004t0001g0132 a0001c0004t0001g0130 a0001c0004t0001g0131 a0001c0004t0001g0132	3	312	0.0096	21	c.331 others(40): Show c.3311+2381_3311+2401dupTTTTTTTTTTTTTTTTTTTTT	SCAPER	ENSG00000140386.13	transcript	ENST00000563290.6	protein_coding	26/31			chr15	TogoVar
SCAPER_chr15_76342904_76910340	76488714	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01258.hp1 NA18946.hp2 HG01258.hp1 NA18946.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0296 a0002c0002t0002g0300 a0002c0002t0002g0296 a0002c0002t0002g0300	2	312	0.0064	21	c.295 others(42): Show c.2954+16124_2954+16144dupAAAAAAAAAAAAAAAAAAAAA	SCAPER	ENSG00000140386.13	transcript	ENST00000563290.6	protein_coding	24/31			chr15	TogoVar
SCAP_chr3_47408681_47480941	47417894	G G	GGTGAGAG others(14): Show GGTGAGAGGGGGCGGGGGAGAA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00408.hp2 others(150): Show HG00099.hp1 HG00140.hp1 HG00408.hp2 HG00544.hp1 HG00558.hp2 HG00597.hp2 HG00609.hp2 HG00621.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01069.hp2 HG01070.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01175.hp2 HG01256.hp2 HG01261.hp2 HG01346.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp1 HG01515.hp2 HG01884.hp2 HG01928.hp2 HG01934.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG02004.hp1 HG02027.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02148.hp2 HG02155.hp2 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02300.hp2 HG02451.hp1 HG02486.hp1 HG02572.hp2 HG02602.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp2 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03834.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18943.hp2 NA18944.hp1 NA18947.hp1 NA18951.hp1 NA18952.hp2 NA18953.hp2 NA18954.hp2 NA18957.hp1 NA18960.hp2 NA18961.hp2 NA18966.hp1 NA18967.hp2 NA18970.hp1 NA18975.hp1 NA18977.hp2 NA18979.hp1 NA18983.hp2 NA18984.hp2 NA18988.hp2 NA18989.hp2 NA18997.hp2 NA18999.hp1 NA19000.hp1 NA19002.hp2 NA19004.hp2 NA19005.hp2 NA19010.hp1 NA19011.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19055.hp1 NA19060.hp1 NA19063.hp2 NA19066.hp1 NA19067.hp2 NA19079.hp1 NA19080.hp1 NA19081.hp2 NA19084.hp2 NA19090.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA21309.hp2	a0001 a0006 a0008 others(2): Show a0001 a0006 a0008 a0012 a0013	a0001c0001 a0001c0005 a0001c0008 others(9): Show a0001c0001 a0001c0005 a0001c0008 a0001c0009 a0001c0010 a0001c0018 a0001c0019 a0001c0022 a0006c0021 a0008c0013 a0012c0016 a0013c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0005t0001 a0001c0008t0001 a0001c0009t0001 a0001c0010t0001 a0001c0018t0002 a0001c0019t0001 a0001c0022t0001 a0006c0021t0001 a0008c0013t0001 a0012c0016t0001 a0013c0020t0001	a0001c0001t0001g0003 a0001c0001t0001g0019 a0001c0001t0001g0020 others(150): Show a0001c0001t0001g0003 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0134 a0001c0001t0001g0169 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0198 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0269 a0001c0001t0001g0271 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0277 a0001c0001t0001g0278 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0002g0288 a0001c0001t0002g0289 a0001c0001t0002g0290 a0001c0001t0002g0291 a0001c0001t0002g0292 a0001c0001t0002g0293 a0001c0001t0002g0294 a0001c0001t0002g0295 a0001c0001t0002g0296 a0001c0001t0002g0297 a0001c0001t0002g0298 a0001c0001t0002g0299 a0001c0001t0002g0300 a0001c0001t0002g0302 a0001c0001t0003g0215 a0001c0001t0003g0216 a0001c0001t0003g0218 a0001c0001t0003g0219 a0001c0001t0003g0231 a0001c0001t0003g0243 a0001c0001t0003g0244 a0001c0001t0003g0245 a0001c0001t0003g0246 a0001c0001t0003g0259 a0001c0001t0003g0260 a0001c0001t0003g0270 a0001c0001t0003g0273 a0001c0001t0003g0274 a0001c0001t0003g0284 a0001c0001t0005g0236 a0001c0001t0005g0238 a0001c0001t0006g0001 a0001c0005t0001g0188 a0001c0005t0001g0195 a0001c0005t0001g0196 a0001c0008t0001g0023 a0001c0008t0001g0024 a0001c0009t0001g0267 a0001c0010t0001g0180 a0001c0018t0002g0301 a0001c0019t0001g0046 a0001c0022t0001g0197 a0006c0021t0001g0211 a0008c0013t0001g0266 a0012c0016t0001g0247 a0013c0020t0001g0224	153	304	0.5033	21	c.244 others(36): Show c.2448-69_2448-68insTTCTCCCCCGCCCCCTCTCAC	SCAP	ENSG00000114650.21	transcript	ENST00000265565.10	protein_coding	16/22			chr3	TogoVar
SCAP_chr3_47408681_47480941	47473080	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00673.hp2 HG00738.hp1 others(31): Show HG00597.hp2 HG00673.hp2 HG00738.hp1 HG01070.hp2 HG01515.hp2 HG01943.hp2 HG01952.hp1 HG02056.hp1 HG02083.hp1 HG02132.hp1 HG02145.hp1 HG02155.hp1 HG03704.hp2 NA18943.hp2 NA18953.hp2 NA18957.hp1 NA18960.hp2 NA18961.hp2 NA18964.hp1 NA18966.hp1 NA18967.hp2 NA18970.hp1 NA18975.hp1 NA18979.hp1 NA18983.hp1 NA18983.hp2 NA18989.hp2 NA18999.hp1 NA19002.hp2 NA19011.hp1 NA19060.hp1 NA19063.hp2 NA19081.hp2 NA21309.hp2	a0001 a0002 a0006 others(1): Show a0001 a0002 a0006 a0013	a0001c0001 a0002c0002 a0006c0021 others(1): Show a0001c0001 a0002c0002 a0006c0021 a0013c0020	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0002c0002t0001 a0006c0021t0001 a0013c0020t0001	a0001c0001t0001g0173 a0001c0001t0001g0205 a0001c0001t0001g0206 others(31): Show a0001c0001t0001g0173 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0277 a0001c0001t0001g0280 a0001c0001t0003g0215 a0001c0001t0003g0216 a0001c0001t0003g0218 a0001c0001t0003g0219 a0001c0001t0003g0231 a0001c0001t0003g0284 a0001c0001t0006g0001 a0002c0002t0001g0227 a0006c0021t0001g0211 a0013c0020t0001g0224	34	304	0.1118	21	c.-99 others(38): Show c.-99+2718_-99+2719insTTTTTTTTTTTTTTTTTTTTT	SCAP	ENSG00000114650.21	transcript	ENST00000265565.10	protein_coding	1/22			chr3	TogoVar
SCAP_chr3_47408681_47480941	47473085	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG02735.hp2 HG00544.hp1 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0186 a0001c0001t0001g0187	2	304	0.0066	21	c.-99 others(38): Show c.-99+2713_-99+2714insGTTTTTTTTTTTTTTTTTTTT	SCAP	ENSG00000114650.21	transcript	ENST00000265565.10	protein_coding	1/22			chr3	TogoVar
SCAP_chr3_47408681_47480941	47473086	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0185 a0001c0001t0001g0185	1	304	0.0033	21	c.-99 others(38): Show c.-99+2712_-99+2713insGTTTTTTTTTTTTTTTTTTTT	SCAP	ENSG00000114650.21	transcript	ENST00000265565.10	protein_coding	1/22			chr3	TogoVar
SCARA3_chr8_27628902_27678018	27668546	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02004.hp1 NA18963.hp1 NA18995.hp1 others(2): Show HG02004.hp1 NA18963.hp1 NA18995.hp1 NA19058.hp1 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0035 others(2): Show a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0035 a0001c0001t0001g0037 a0001c0001t0001g0086	5	408	0.0123	21	c.137 others(40): Show c.1370-2338_1370-2337insAAAAAAAAAAAAAAAAAAAAA	SCARA3	ENSG00000168077.14	transcript	ENST00000301904.4	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
SCARA5_chr8_27864883_27997673	27936592	T T	TAAAAAAA others(14): Show TAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03139.hp2 HG03041.hp1 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0003t0060 a0001c0001t0002 a0001c0003t0060	a0001c0001t0002g0003 a0001c0003t0060g0259 a0001c0001t0002g0003 a0001c0003t0060g0259	2	314	0.0064	21	c.242 others(40): Show c.242-14348_242-14347insTTTTTTTTTTTTTTTTTTTTT	SCARA5	ENSG00000168079.17	transcript	ENST00000354914.8	protein_coding	3/8			chr8	TogoVar
SCARA5_chr8_27864883_27997673	27989129	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0065 a0001c0002t0065	a0001c0002t0065g0313 a0001c0002t0065g0313	1	314	0.0032	21	c.-15 others(38): Show c.-15-1520_-15-1500dupAAAAAAAAAAAAAAAAAAAAA	SCARA5	ENSG00000168079.17	transcript	ENST00000354914.8	protein_coding	1/8			chr8	TogoVar
SCARF1_chr17_1628858_1650732	1643237	C C	CCTCCCCG others(14): Show CCTCCCCGCCCACCGGTGTCCG	intron_variant intron_variant	MODIFIER	NA19058.hp2 NA19058.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0065 a0002c0002t0002g0065	1	401	0.0025	21	c.791 others(36): Show c.791+204_791+205insCGGACACCGGTGGGCGGGGAG	SCARF1	ENSG00000074660.17	transcript	ENST00000263071.9	protein_coding	4/10			chr17	TogoVar
SCART1_chr10_133448945_133474760	133456588	G G	GGAGGAGG others(14): Show GGAGGAGGAGGAGTGGGAGGAC	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02055.hp1 HG02559.hp1 others(6): Show HG01261.hp1 HG02055.hp1 HG02559.hp1 HG02615.hp2 HG02818.hp1 HG03098.hp1 HG03209.hp1 NA19030.hp1 NA20300.hp1	a0001 a0009 a0010 others(1): Show a0001 a0009 a0010 a0011	a0001c0001 a0009c0025 a0010c0017 others(1): Show a0001c0001 a0009c0025 a0010c0017 a0011c0016	a0001c0001t0001 a0009c0025t0003 a0010c0017t0002 others(1): Show a0001c0001t0001 a0009c0025t0003 a0010c0017t0002 a0011c0016t0004	a0001c0001t0001g0058 a0009c0025t0003g0030 a0009c0025t0003g0122 others(4): Show a0001c0001t0001g0058 a0009c0025t0003g0030 a0009c0025t0003g0122 a0010c0017t0002g0038 a0010c0017t0002g0138 a0010c0017t0002g0142 a0011c0016t0004g0050	9	434	0.0207	21	c.385 others(34): Show c.385+46_385+66dupGTGGGAGGACGAGGAGGAGGA	SCART1	ENSG00000214279.13	transcript	ENST00000640237.2	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr10	TogoVar

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