Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(14): Show CTTCTTCTTATTATTATTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01346.hp1 HG01934.hp2 HG02148.hp1 others(9): Show HG01346.hp1 HG01934.hp2 HG02148.hp1 HG02165.hp2 HG02293.hp2 HG04199.hp1 NA18970.hp2 NA19012.hp1 NA19055.hp2 NA19074.hp2 NA19078.hp2 NA19080.hp1	a0001 a0008 a0011 others(1): Show a0001 a0008 a0011 a0016	a0001c0002 a0001c0004 a0001c0005 others(3): Show a0001c0002 a0001c0004 a0001c0005 a0008c0032 a0011c0031 a0016c0027	a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 others(6): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0004t0003 a0001c0005t0025 a0001c0005t0026 a0008c0032t0061 a0011c0031t0048 a0016c0027t0004	a0001c0002t0001g0212 a0001c0002t0001g0265 a0001c0002t0002g0210 others(9): Show a0001c0002t0001g0212 a0001c0002t0001g0265 a0001c0002t0002g0210 a0001c0002t0002g0222 a0001c0002t0002g0264 a0001c0002t0004g0012 a0001c0004t0003g0279 a0001c0005t0025g0038 a0001c0005t0026g0037 a0008c0032t0061g0211 a0011c0031t0048g0043 a0016c0027t0004g0020	12	352	0.0341	21	c.-27 others(32): Show c.-2737_-2736insTAATAATAATAATAAGAAGAA		TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding					2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(14): Show CTTCTTCTTCTTATTATTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp1 HG01981.hp1 HG02135.hp2 others(5): Show HG01081.hp1 HG01981.hp1 HG02135.hp2 HG04115.hp2 NA19064.hp1 NA19070.hp1 NA20300.hp1 NA21309.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0005 a0001c0019 others(1): Show a0001c0002 a0001c0005 a0001c0019 a0003c0006	a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 others(4): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0005t0004 a0001c0005t0030 a0001c0019t0026 a0003c0006t0002	a0001c0002t0001g0215 a0001c0002t0001g0218 a0001c0002t0002g0214 others(5): Show a0001c0002t0001g0215 a0001c0002t0001g0218 a0001c0002t0002g0214 a0001c0002t0005g0322 a0001c0005t0004g0027 a0001c0005t0030g0192 a0001c0019t0026g0035 a0003c0006t0002g0150	8	352	0.0227	21	c.-27 others(32): Show c.-2737_-2736insTAATAATAATAAGAAGAAGAA		TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding					2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(14): Show CTTCTTCTTCTTCTTATTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01256.hp1 HG02004.hp2 HG02273.hp2 others(1): Show HG01256.hp1 HG02004.hp2 HG02273.hp2 HG03017.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0001 a0001c0005t0004 a0001c0005t0009 a0001c0002t0001 a0001c0005t0004 a0001c0005t0009	a0001c0002t0001g0213 a0001c0002t0001g0216 a0001c0005t0004g0019 others(1): Show a0001c0002t0001g0213 a0001c0002t0001g0216 a0001c0005t0004g0019 a0001c0005t0009g0022	4	352	0.0114	21	c.-27 others(32): Show c.-2737_-2736insTAATAATAAGAAGAAGAAGAA		TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding					2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(14): Show CTTCTTCTTCTTCTTCTTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp2 HG01433.hp2 HG03579.hp2 others(1): Show HG01192.hp2 HG01433.hp2 HG03579.hp2 NA19057.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0009 a0002c0001 a0001c0002 a0001c0009 a0002c0001	a0001c0002t0001 a0001c0009t0050 a0001c0009t0098 others(1): Show a0001c0002t0001 a0001c0009t0050 a0001c0009t0098 a0002c0001t0006	a0001c0002t0001g0209 a0001c0009t0050g0168 a0001c0009t0098g0347 others(1): Show a0001c0002t0001g0209 a0001c0009t0050g0168 a0001c0009t0098g0347 a0002c0001t0006g0072	4	352	0.0114	21	c.-27 others(32): Show c.-2737_-2736insTAATAAGAAGAAGAAGAAGAA		TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding					2382		chr19	TogoVar
TCF4_chr18_55217185_55593192	55586153	G G	GAGCAGCA others(14): Show GAGCAGCAGCAGCAGCAGCAGC	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0012 a0001c0002t0012	a0001c0002t0012g0022 a0001c0002t0012g0022	1	122	0.0082	21	c.73- others(34): Show c.73-822_73-802dupGCTGCTGCTGCTGCTGCTGCT		TCF4	ENSG00000196628.20	transcript	ENST00000354452.8	protein_coding	2/19						chr18	TogoVar
TCF4_chr18_55217185_55593192	55586153	G G	GAGGAGCA others(14): Show GAGGAGCAGCAGCAGCAGCAGC	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02165.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0097 a0001c0001t0001g0097	1	122	0.0082	21	c.73- others(34): Show c.73-802_73-801insGCTGCTGCTGCTGCTGCTCCT		TCF4	ENSG00000196628.20	transcript	ENST00000354452.8	protein_coding	2/19						chr18	TogoVar
TCF7L1_chr2_85128392_85315387	85299860	A A	ACACACAC others(14): Show ACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0099	1	236	0.0042	21	c.526 others(38): Show c.526-2624_526-2623insCACACACACACACACACACAC		TCF7L1	ENSG00000152284.5	transcript	ENST00000282111.4	protein_coding	4/11						chr2	TogoVar
TCF7L2_chr10_112945247_113172678	113097654	A A	AAAAAAAC others(14): Show AAAAAAACAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03098.hp2 HG03130.hp2 HG02818.hp2 HG03098.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0074 a0001c0001t0001g0123 a0001c0001t0004g0133 a0001c0001t0001g0074 a0001c0001t0001g0123 a0001c0001t0004g0133	3	200	0.0150	21	c.553 others(40): Show c.553-43524_553-43523insCAAAAAAAAAAAAACAAAAAA		TCF7L2	ENSG00000148737.18	transcript	ENST00000355995.9	protein_coding	5/14					INFO_REALIGN_3_PRIME	chr10	TogoVar
TCF7L2_chr10_112945247_113172678	113097654	A A	AAAAAAAC others(14): Show AAAAAAACAACAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	200	0.0050	21	c.553 others(40): Show c.553-43524_553-43523insCAACAAAAAAAAAACAAAAAA		TCF7L2	ENSG00000148737.18	transcript	ENST00000355995.9	protein_coding	5/14					INFO_REALIGN_3_PRIME	chr10	TogoVar
TCF7_chr5_134109681_134153210	134109770	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp2 NA21309.hp2 HG02451.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0024 a0001c0001t0015g0069 a0001c0001t0015g0024 a0001c0001t0015g0069	2	344	0.0058	21	c.-51 others(32): Show c.-5137_-5136insAAAAAAAAAAAAAAAAAAAAA		TCF7	ENSG00000081059.20	transcript	ENST00000342854.10	protein_coding					4910		chr5	TogoVar
TCFL5_chr20_62836005_62866822	62861719	C C	CGGCGGGA others(14): Show CGGCGGGAGGCGGGAGGCGGGA	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18955.hp1 NA18965.hp1 NA18955.hp1 NA18965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0214 a0001c0001t0017g0215 a0001c0001t0017g0214 a0001c0001t0017g0215	2	390	0.0051	21	c.-70 others(28): Show c.-70_-50dupTCCCGCCTCCCGCCTCCCGCC		TCFL5	ENSG00000101190.13	transcript	ENST00000335351.8	protein_coding	1/6				50		chr20	TogoVar
TCHHL1_chr1_152079141_152094064	152082782	T T	TATATATA others(14): Show TATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18955.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	376	0.0027	21	c.21 others(32): Show c.2184_*2185insTATATATATATATATATATAT		TCHHL1	ENSG00000182898.4	transcript	ENST00000368806.2	protein_coding					1358		chr1	TogoVar
TCHH_chr1_152101317_152120444	152112073	G G	GCTGCTCG others(14): Show GCTGCTCGCGCCTCTCCTCCTC	conservative_inframe_insertion conservative_inframe_insertion	MODERATE	HG00423.hp1 HG03017.hp1 HG03831.hp1 others(7): Show HG00423.hp1 HG03017.hp1 HG03831.hp1 NA18953.hp2 NA18994.hp1 NA19005.hp2 NA19011.hp2 NA19066.hp2 NA19068.hp1 NA19077.hp2	a0017 a0038 a0083 a0017 a0038 a0083	a0017c0020 a0038c0029 a0083c0138 a0017c0020 a0038c0029 a0083c0138	a0017c0020t0001 a0038c0029t0001 a0083c0138t0001 a0017c0020t0001 a0038c0029t0001 a0083c0138t0001	a0017c0020t0001g0018 a0038c0029t0001g0029 a0083c0138t0001g0154 a0017c0020t0001g0018 a0038c0029t0001g0029 a0083c0138t0001g0154	10	402	0.0249	21	c.114 others(30): Show c.1143_1144insGAGGAGGAGAGGCGCGAGCAG	p.Gln others(34): Show p.Gln381_Gln382insGluGluGluArgArgGluGln	TCHH	ENSG00000159450.13	transcript	ENST00000614923.2	protein_coding	3/3	1228/6985	1143/5832	381/1943			chr1	TogoVar
TCL1A_chr14_95704947_95719125	95708502	A A	AAAAAAAA others(14): Show AAAAAAAAAAATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	374	0.0027	21	c.23 others(32): Show c.2385_*2386insATATATATATATTTTTTTTTT		TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding					1444		chr14	TogoVar
TCN2_chr22_30602174_30632271	30623769	T T	TATGAAAT others(14): Show TATGAAATATATATATATACAG	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0001 a0006c0006t0001	a0006c0006t0001g0347 a0006c0006t0001g0347	1	466	0.0022	21	c.122 others(38): Show c.1222+687_1222+688insTGAAATATATATATATACAGA		TCN2	ENSG00000185339.10	transcript	ENST00000215838.8	protein_coding	8/8					INFO_REALIGN_3_PRIME	chr22	TogoVar
TCP11L1_chr11_33034572_33078550	33038139	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0195 a0001c0003t0001g0195	1	390	0.0026	21	c.-16 others(32): Show c.-1678_-1677insTTTTTTTTTTTTTTTTTTTTT		TCP11L1	ENSG00000176148.16	transcript	ENST00000334274.9	protein_coding					1432		chr11	TogoVar
TCP11X1_chrX_102210301_102231795	102220670	C C	CATATTAT others(14): Show CATATTATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0024 a0003c0004t0001g0024	1	37	0.0270	21	c.231 others(36): Show c.231-867_231-866insTATATATATATATATATATAT		TCP11X1	ENSG00000268235.9	transcript	ENST00000622971.4	protein_coding	3/9					INFO_REALIGN_3_PRIME	chrX	TogoVar
TCP11X2_chrX_102455315_102476812	102466422	A A	AAATATAT others(14): Show AAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG04115.hp2 HG04115.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0030	1	137	0.0073	21	c.231 others(36): Show c.231-854_231-853insATATATATATATATATATATT		TCP11X2	ENSG00000215029.12	transcript	ENST00000642911.3	protein_coding	3/9						chrX	TogoVar
TCTN3_chr10_95658401_95698927	95672161	T T	TGTGTGTG others(14): Show TGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18967.hp2 NA18967.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0149 a0001c0001t0001g0149	1	400	0.0025	21	c.159 others(40): Show c.1591-7862_1591-7861insCACACACACACACACACACAC		TCTN3	ENSG00000119977.22	transcript	ENST00000371217.10	protein_coding	13/13						chr10	TogoVar
TCTN3_chr10_95658401_95698927	95677473	A A	ACAGTTTT others(14): Show ACAGTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0278 a0002c0003t0001g0278	1	400	0.0025	21	c.159 others(40): Show c.1590+2998_1590+2999insAAAAAAAAAAAAAAAAAACTG		TCTN3	ENSG00000119977.22	transcript	ENST00000371217.10	protein_coding	13/13						chr10	TogoVar
TDGF1_chr3_46572788_46587457	46573545	A A	ATATATAT others(14): Show ATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0020 a0002c0002t0020	a0002c0002t0020g0002 a0002c0002t0020g0002	1	444	0.0023	21	c.-44 others(32): Show c.-4425_-4424insTATATATATATATATATATAT		TDGF1	ENSG00000241186.10	transcript	ENST00000296145.6	protein_coding					4242		chr3	TogoVar
TDGF1_chr3_46572788_46587457	46573547	A A	AAAAATAT others(14): Show AAAAATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01516.hp1 HG01516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	444	0.0023	21	c.-44 others(32): Show c.-4423_-4422insAAAATATATATATATATATAT		TDGF1	ENSG00000241186.10	transcript	ENST00000296145.6	protein_coding					4240		chr3	TogoVar
TDP1_chr14_89950927_90049764	90020584	C C	CTCCCTCC others(14): Show CTCCCTCCCTCCCTTCCTTCCT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02300.hp2 HG02109.hp1 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0117 a0001c0001t0001g0118	2	264	0.0076	21	c.164 others(40): Show c.1644+1179_1644+1180insTCCTTCCTTCCCTCCCTCCCT		TDP1	ENSG00000042088.14	transcript	ENST00000335725.9	protein_coding	15/16					INFO_REALIGN_3_PRIME	chr14	TogoVar
TDP2_chr6_24644979_24671899	24648659	G G	GAAAAAAA others(14): Show GAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0087	1	418	0.0024	21	c.21 others(32): Show c.2128_*2129insTTTTTTTTTTTTTTTTTTTTT		TDP2	ENSG00000111802.14	transcript	ENST00000378198.9	protein_coding					1319		chr6	TogoVar
TDRD12_chr19_32714767_32834580	32739518	C C	CTGCATCT others(14): Show CTGCATCTCCTGGGGCTCTCTT	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0005 a0004c0004t0005	a0004c0004t0005g0266 a0004c0004t0005g0266	1	380	0.0026	21	c.320 others(36): Show c.320+560_320+580dupGGCTCTCTTTGCATCTCCTGG		TDRD12	ENSG00000173809.18	transcript	ENST00000639142.2	protein_coding	3/32					INFO_REALIGN_3_PRIME	chr19	TogoVar
TDRD12_chr19_32714767_32834580	32739836	A A	ACTCTCTG others(14): Show ACTCTCTGCATCTCCTGGTGTG	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA18951.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0034 a0002c0003t0034	a0002c0003t0034g0214 a0002c0003t0034g0214	1	380	0.0026	21	c.320 others(36): Show c.320+864_320+884dupTGCTCTCTGCATCTCCTGGTG		TDRD12	ENSG00000173809.18	transcript	ENST00000639142.2	protein_coding	3/32					INFO_REALIGN_3_PRIME	chr19	TogoVar
TDRD12_chr19_32714767_32834580	32739860	C C	CTCTGCAT others(14): Show CTCTGCATCTCCTGGTGCGCTG	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00408.hp2 HG00423.hp2 others(46): Show HG00323.hp2 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00609.hp2 HG01261.hp2 HG01361.hp2 HG02027.hp1 HG02071.hp2 HG02074.hp2 HG02135.hp2 HG02559.hp2 HG02630.hp1 HG02809.hp1 HG02970.hp2 HG03130.hp2 HG03704.hp2 NA18612.hp1 NA18747.hp2 NA18941.hp2 NA18946.hp1 NA18947.hp2 NA18950.hp1 NA18954.hp1 NA18956.hp1 NA18960.hp2 NA18962.hp2 NA18970.hp2 NA18977.hp2 NA18978.hp2 NA18979.hp1 NA18986.hp2 NA18990.hp1 NA18995.hp2 NA18998.hp2 NA19002.hp2 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19060.hp2 NA19062.hp1 NA19064.hp1 NA19066.hp2 NA19068.hp1 NA19077.hp2 NA19083.hp2 NA19084.hp1 NA20905.hp1 NA21309.hp2	a0001 a0008 a0012 others(1): Show a0001 a0008 a0012 a0024	a0001c0001 a0001c0017 a0001c0019 others(3): Show a0001c0001 a0001c0017 a0001c0019 a0008c0011 a0012c0015 a0024c0029	a0001c0001t0004 a0001c0001t0010 a0001c0001t0012 others(9): Show a0001c0001t0004 a0001c0001t0010 a0001c0001t0012 a0001c0001t0020 a0001c0001t0029 a0001c0001t0030 a0001c0001t0032 a0001c0017t0021 a0001c0019t0004 a0008c0011t0004 a0012c0015t0017 a0024c0029t0004	a0001c0001t0004g0127 a0001c0001t0004g0128 a0001c0001t0004g0133 others(46): Show a0001c0001t0004g0127 a0001c0001t0004g0128 a0001c0001t0004g0133 a0001c0001t0004g0136 a0001c0001t0004g0137 a0001c0001t0004g0139 a0001c0001t0004g0140 a0001c0001t0004g0142 a0001c0001t0004g0143 a0001c0001t0004g0144 a0001c0001t0004g0146 a0001c0001t0004g0151 a0001c0001t0004g0152 a0001c0001t0004g0153 a0001c0001t0004g0154 a0001c0001t0004g0157 a0001c0001t0004g0158 a0001c0001t0004g0160 a0001c0001t0004g0162 a0001c0001t0004g0163 a0001c0001t0004g0165 a0001c0001t0004g0168 a0001c0001t0004g0169 a0001c0001t0004g0170 a0001c0001t0004g0171 a0001c0001t0004g0177 a0001c0001t0004g0178 a0001c0001t0010g0132 a0001c0001t0010g0149 a0001c0001t0010g0150 a0001c0001t0010g0155 a0001c0001t0010g0161 a0001c0001t0010g0164 a0001c0001t0010g0180 a0001c0001t0012g0131 a0001c0001t0020g0126 a0001c0001t0020g0147 a0001c0001t0029g0156 a0001c0001t0030g0159 a0001c0001t0032g0167 a0001c0017t0021g0129 a0001c0017t0021g0130 a0001c0019t0004g0138 a0008c0011t0004g0141 a0008c0011t0004g0145 a0008c0011t0004g0148 a0012c0015t0017g0135 a0012c0015t0017g0166 a0024c0029t0004g0134	49	380	0.1290	21	c.320 others(36): Show c.320+883_320+903dupTGCGCTGTCTGCATCTCCTGG		TDRD12	ENSG00000173809.18	transcript	ENST00000639142.2	protein_coding	3/32					INFO_REALIGN_3_PRIME	chr19	TogoVar
TDRD1_chr10_114174353_114237666	114236553	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0010 a0010	a0010c0016 a0010c0016	a0010c0016t0081 a0010c0016t0081	a0010c0016t0081g0232 a0010c0016t0081g0232	1	304	0.0033	21	c.84 others(32): Show c.8423_*8424insAAAAAAAAAAAAAAAAAAAAA		TDRD1	ENSG00000095627.10	transcript	ENST00000695399.1	protein_coding					3888		chr10	TogoVar
TDRD3_chr13_60392220_60578871	60435918	G G	GTTTTTTT others(14): Show GTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0064 a0002c0002t0001g0064	1	272	0.0037	21	c.42- others(36): Show c.42-3757_42-3756insTTTTTTTTTTTTTTTTTTTTT		TDRD3	ENSG00000083544.16	transcript	ENST00000377881.8	protein_coding	1/13					INFO_REALIGN_3_PRIME	chr13	TogoVar
TDRD9_chr14_103923456_104057667	103956109	A A	ATATATAT others(14): Show ATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0368 a0001c0002t0002g0368	1	372	0.0027	21	c.322 others(36): Show c.322+339_322+340insTATATATATATATATATATAT		TDRD9	ENSG00000156414.20	transcript	ENST00000409874.9	protein_coding	2/35						chr14	TogoVar
TDRD9_chr14_103923456_104057667	103968795	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0021 a0001c0003t0004g0021	1	372	0.0027	21	c.766 others(38): Show c.766-1737_766-1736insAAAAAAAAAAAAAAAAAAAAA		TDRD9	ENSG00000156414.20	transcript	ENST00000409874.9	protein_coding	5/35					INFO_REALIGN_3_PRIME	chr14	TogoVar
TEAD1_chr11_12669421_12949737	12821961	C C	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02257.hp2 HG02280.hp1 others(1): Show HG02055.hp2 HG02257.hp2 HG02280.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0007 a0001c0001t0044 a0001c0002t0004 others(1): Show a0001c0001t0007 a0001c0001t0044 a0001c0002t0004 a0001c0002t0046	a0001c0001t0007g0058 a0001c0001t0044g0197 a0001c0002t0004g0113 others(1): Show a0001c0001t0007g0058 a0001c0001t0044g0197 a0001c0002t0004g0113 a0001c0002t0046g0196	4	206	0.0194	21	c.203 others(40): Show c.203-40269_203-40268insTTTTTTTTTTTTTTTTTTTTT		TEAD1	ENSG00000187079.20	transcript	ENST00000527636.7	protein_coding	3/12					WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME	chr11	TogoVar
TEAD1_chr11_12669421_12949737	12837681	T T	TTTCTCCT others(14): Show TTTCTCCTTTCTCCCTTCTCCC	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG01517.hp2 HG02257.hp1 others(3): Show HG01516.hp1 HG01517.hp2 HG02257.hp1 HG02615.hp2 HG02818.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0121 a0001c0001t0001g0133 a0001c0001t0001g0135 others(3): Show a0001c0001t0001g0121 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0176 a0001c0001t0001g0204 a0001c0002t0002g0134	6	206	0.0291	21	c.203 others(40): Show c.203-24563_203-24562insTTTCTCCCTTCTCCCTTCTCC		TEAD1	ENSG00000187079.20	transcript	ENST00000527636.7	protein_coding	3/12					WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME	chr11	TogoVar
TEAD1_chr11_12669421_12949737	12908883	G G	GTTTTTTT others(14): Show GTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0107 a0001c0001t0001g0107	1	206	0.0049	21	c.873 others(38): Show c.873+6783_873+6784insTTTTTTTTTTTTTTTTTTTTT		TEAD1	ENSG00000187079.20	transcript	ENST00000527636.7	protein_coding	10/12					WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME	chr11	TogoVar
TEAD2_chr19_49335595_49367416	49337687	G G	GGAAAAAG others(14): Show GGAAAAAGAGAGAACAAGAGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18972.hp1 NA18972.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	356	0.0028	21	c.36 others(32): Show c.3616_*3636dupTTCTCTTGTTCTCTCTTTTTC		TEAD2	ENSG00000074219.14	transcript	ENST00000593945.6	protein_coding					2907		chr19	TogoVar
TECRL_chr4_64272702_64414450	64334030	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01358.hp2 HG01361.hp2 others(4): Show HG00438.hp1 HG01358.hp2 HG01361.hp2 NA18965.hp2 NA19001.hp1 NA19003.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0016 a0001c0001t0002 a0001c0001t0003 a0001c0001t0016	a0001c0001t0002g0165 a0001c0001t0002g0173 a0001c0001t0002g0202 others(4): Show a0001c0001t0002g0165 a0001c0001t0002g0173 a0001c0001t0002g0202 a0001c0001t0002g0205 a0001c0001t0002g0206 a0001c0001t0003g0172 a0001c0001t0016g0183	7	272	0.0257	21	c.287 others(38): Show c.287-5475_287-5474insTTTTTTTTTTTTTTTTTTTTT		TECRL	ENSG00000205678.8	transcript	ENST00000381210.8	protein_coding	2/11						chr4	TogoVar
TECRL_chr4_64272702_64414450	64345907	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19005.hp2 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	272	0.0037	21	c.287 others(40): Show c.287-17372_287-17352dupTTTTTTTTTTTTTTTTTTTTT		TECRL	ENSG00000205678.8	transcript	ENST00000381210.8	protein_coding	2/11						chr4	TogoVar
TECTA_chr11_121096243_121196490	121181450	A A	AATAATTA others(14): Show AATAATTATTATTATTATTATT	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0030 a0030	a0030c0024 a0030c0024	a0030c0024t0002 a0030c0024t0002	a0030c0024t0002g0267 a0030c0024t0002g0267	1	348	0.0029	21	c.600 others(40): Show c.6000-6380_6000-6379insAATTATTATTATTATTATTAT		TECTA	ENSG00000109927.11	transcript	ENST00000392793.6	protein_coding	20/23					INFO_REALIGN_3_PRIME	chr11	TogoVar
TEKT5_chr16_10622501_10699930	10697881	A A	AAATATCT others(14): Show AAATATCTATATTTATATTTAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0191 a0001c0003t0001g0191	1	388	0.0026	21	c.-30 others(32): Show c.-3009_-3008insATAAATATAAATATAGATATT		TEKT5	ENSG00000153060.8	transcript	ENST00000283025.7	protein_coding					2952		chr16	TogoVar
TELO2_chr16_1488360_1515454	1507827	T T	TGACACAC others(14): Show TGACACACTCTATCAGATTGGG	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0005 a0002c0005t0005	a0002c0005t0005g0124 a0002c0005t0005g0124	1	446	0.0022	21	c.240 others(38): Show c.2407+112_2407+113insACACACTCTATCAGATTGGGG		TELO2	ENSG00000100726.15	transcript	ENST00000262319.11	protein_coding	20/20					INFO_REALIGN_3_PRIME	chr16	TogoVar
TENM2_chr5_166974029_168269157	166979194	C C	CCAGCAGC others(14): Show CCAGCAGCAGCAGCAGCAGCAG	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0004 a0001c0006t0004	a0001c0006t0004g0026 a0001c0006t0004g0028 a0001c0006t0004g0026 a0001c0006t0004g0028	2	54	0.0370	21	c.-49 others(30): Show c.-496_-476dupAGCAGCAGCAGCAGCAGCAGC		TENM2	ENSG00000145934.17	transcript	ENST00000518659.6	protein_coding	1/31				305600	INFO_REALIGN_3_PRIME	chr5	TogoVar
TENM2_chr5_166974029_168269157	167517609	T T	TGAGCTGA others(14): Show TGAGCTGAGAAGCTCAGCTGAG	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0008 a0008	a0008c0036 a0008c0036	a0008c0036t0009 a0008c0036t0009	a0008c0036t0009g0017 a0008c0036t0009g0017	1	54	0.0185	21	c.502 others(42): Show c.502+142136_502+142137insGAGCTGAGAAGCTCAGCTGAG		TENM2	ENSG00000145934.17	transcript	ENST00000518659.6	protein_coding	4/30						chr5	TogoVar
TENM2_chr5_166974029_168269157	167776593	G G	GAAAAAAA others(14): Show GAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0038 a0001c0038	a0001c0038t0006 a0001c0038t0006	a0001c0038t0006g0003 a0001c0038t0006g0003	1	54	0.0185	21	c.503 others(40): Show c.503-99380_503-99360dupAAAAAAAAAAAAAAAAAAAAA		TENM2	ENSG00000145934.17	transcript	ENST00000518659.6	protein_coding	4/30					INFO_REALIGN_3_PRIME	chr5	TogoVar
TENM2_chr5_166974029_168269157	167853289	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0013 a0001c0002t0013	a0001c0002t0013g0041 a0001c0002t0013g0041	1	54	0.0185	21	c.503 others(40): Show c.503-22694_503-22674dupAAAAAAAAAAAAAAAAAAAAA		TENM2	ENSG00000145934.17	transcript	ENST00000518659.6	protein_coding	4/30					INFO_REALIGN_3_PRIME	chr5	TogoVar
TENM3_chr4_182238402_182808024	182298984	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0002	a0001c0005t0002g0128 a0001c0005t0002g0128	1	140	0.0071	21	c.-75 others(40): Show c.-75-24950_-75-24930dupAAAAAAAAAAAAAAAAAAAAA		TENM3	ENSG00000218336.9	transcript	ENST00000511685.6	protein_coding	1/27					INFO_REALIGN_3_PRIME	chr4	TogoVar
TENM3_chr4_182238402_182808024	182426007	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03486.hp2 HG03098.hp1 HG03486.hp2	a0001 a0009 a0001 a0009	a0001c0001 a0009c0040 a0001c0001 a0009c0040	a0001c0001t0001 a0009c0040t0001 a0001c0001t0001 a0009c0040t0001	a0001c0001t0001g0112 a0009c0040t0001g0125 a0001c0001t0001g0112 a0009c0040t0001g0125	2	140	0.0143	21	c.511 others(40): Show c.511+79081_511+79101dupAAAAAAAAAAAAAAAAAAAAA		TENM3	ENSG00000218336.9	transcript	ENST00000511685.6	protein_coding	3/27					INFO_REALIGN_3_PRIME	chr4	TogoVar
TENM4_chr11_78647829_79446030	78904359	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0008 a0001c0012t0008	a0001c0012t0008g0012 a0001c0012t0008g0012	1	94	0.0106	21	c.494 others(36): Show c.494-837_494-836insTTTTTTTTTTTTTTTTTTTTT		TENM4	ENSG00000149256.16	transcript	ENST00000278550.12	protein_coding	6/33						chr11	TogoVar
TENM4_chr11_78647829_79446030	79138968	A A	AAAATATA others(14): Show AAAATATATATTATATTTATAT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0038 a0001c0038	a0001c0038t0004 a0001c0038t0004	a0001c0038t0004g0003 a0001c0038t0004g0003	1	94	0.0106	21	c.-66 others(38): Show c.-66+9741_-66+9742insATATAAATATAATATATATTT		TENM4	ENSG00000149256.16	transcript	ENST00000278550.12	protein_coding	4/33						chr11	TogoVar
TENM4_chr11_78647829_79446030	79139777	A A	AATATATA others(14): Show AATATATATATTATATATATAT	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0005 a0001c0006t0005	a0001c0006t0005g0023 a0001c0006t0005g0023	1	94	0.0106	21	c.-66 others(38): Show c.-66+8932_-66+8933insATATATATATAATATATATAT		TENM4	ENSG00000149256.16	transcript	ENST00000278550.12	protein_coding	4/33						chr11	TogoVar
TENT2_chr5_79607441_79693246	79659553	A A	AAATGTAT others(14): Show AAATGTATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0281 a0001c0001t0001g0281	1	344	0.0029	21	c.107 others(40): Show c.1071+2553_1071+2554insATGTATATATATATATATATA		TENT2	ENSG00000164329.15	transcript	ENST00000453514.6	protein_coding	11/14					INFO_REALIGN_3_PRIME	chr5	TogoVar

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