Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FOXD4L1_chr2_113493665_113506150	113495932	A A	AATATCCT others(15): Show AATATCCTTTTTTTTAAAGAATG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02129.hp2 HG02129.hp2	a0000 a0000	a0000c0017 a0000c0017	a0000c0017t0013 a0000c0017t0013	a0000c0017t0013g0000 a0000c0017t0013g0000	1	326	0.0031	22	c.-33 others(33): Show c.-3325_-3324insATATCCTTTTTTTTAAAGAATG	FOXD4L1	ENSG00000184492.7	transcript	ENST00000306507.7	protein_coding		2732		chr2	TogoVar
FOXD4L1_chr2_113493665_113506150	113501509	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0005 a0002c0003t0005	a0002c0003t0005g0000 a0002c0003t0005g0000	1	326	0.0031	22	c.10 others(33): Show c.1026_*1027insTATATATATATATATATATATA	FOXD4L1	ENSG00000184492.7	transcript	ENST00000306507.7	protein_coding		360		chr2	TogoVar
FOXD4L1_chr2_113493665_113506150	113501512	C C	CATATATA others(15): Show CATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02698.hp1 HG04199.hp1 HG02698.hp1 HG04199.hp1	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0009 a0004c0007t0009	a0004c0007t0009g0000 a0004c0007t0009g0000	2	326	0.0061	22	c.10 others(33): Show c.1029_*1030insATATATATATATATATATATAT	FOXD4L1	ENSG00000184492.7	transcript	ENST00000306507.7	protein_coding		363		chr2	TogoVar
FOXD4L3_chr9_68297867_68310084	68305258	A A	ACTATATA others(15): Show ACTATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0000 a0002c0001t0001g0000	1	175	0.0057	22	c.10 others(33): Show c.1053_*1054insCTATATATATATATATATATAT	FOXD4L3	ENSG00000187559.6	transcript	ENST00000342833.4	protein_coding		175		chr9	TogoVar
FOXF1_chr16_86505527_86520422	86508043	C C	CGTGGGCG others(15): Show CGTGGGCGGTGCGGAGCGTGTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp2 HG03453.hp2 HG02559.hp2 HG03453.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0022 a0003c0005t0022	a0003c0005t0022g0004 a0003c0005t0022g0004	2	436	0.0046	22	c.-25 others(33): Show c.-2527_-2526insGTGGGCGGTGCGGAGCGTGTCT	FOXF1	ENSG00000103241.7	transcript	ENST00000262426.6	protein_coding		2483		chr16	TogoVar
FOXH1_chr8_144468412_144480849	144480080	A A	ACCACAGA others(15): Show ACCACAGAAGATCTCTGAGGAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18976.hp2 NA18976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	386	0.0026	22	c.-43 others(33): Show c.-4346_-4325dupCCTCCTCAGAGATCTTCTGTGG	FOXH1	ENSG00000160973.8	transcript	ENST00000377317.5	protein_coding		4232		chr8	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGGGGG others(15): Show GGAGGGGGGGGGGGGGGGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	22	c.-61 others(31): Show c.-610_-609insGAGGGGGGGGGGGGGGGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(15): Show GGGGGGGGGGGGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	22	c.-60 others(31): Show c.-602_-601insGGGGGGGGGGGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GGAGAGAG others(15): Show GGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp2 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	412	0.0024	22	c.-59 others(31): Show c.-590_-589insGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105370	G G	GGAGAGAG others(15): Show GGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01175.hp1 HG01891.hp2 HG02132.hp2 others(4): Show HG01175.hp1 HG01891.hp2 HG02132.hp2 HG02523.hp1 NA18951.hp2 NA18960.hp1 NA19060.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0010 a0001c0001 a0002c0010	a0001c0001t0003 a0002c0010t0009 a0001c0001t0003 a0002c0010t0009	a0001c0001t0003g0001 a0001c0001t0003g0011 a0002c0010t0009g0014 a0001c0001t0003g0001 a0001c0001t0003g0011 a0002c0010t0009g0014	7	412	0.0170	22	c.-58 others(31): Show c.-588_-587insGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		526		chr5	TogoVar
FOXI2_chr10_127732185_127746183	127742057	T T	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp2 HG04228.hp1 HG02145.hp2 HG04228.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0020 a0003c0003t0071 a0001c0001t0020 a0003c0003t0071	a0001c0001t0020g0001 a0003c0003t0071g0003 a0001c0001t0020g0001 a0003c0003t0071g0003	2	434	0.0046	22	c.30 others(33): Show c.3092_*3093insTGTGTGTGTGTGTGTGTGTGTG	FOXI2	ENSG00000186766.8	transcript	ENST00000388920.5	protein_coding		875		chr10	TogoVar
FOXJ2_chr12_8027716_8060517	8050855	T T	TCCCTTCC others(15): Show TCCCTTCCCTTCCCCTTCCCTTC	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0089	1	374	0.0027	22	c.163 others(39): Show c.1636+271_1636+292dupCTTCCCTTCCCCTTCCCTTCCC	FOXJ2	ENSG00000065970.9	transcript	ENST00000162391.8	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
FOXK1_chr7_4677295_4776442	4705552	T T	TCTCGCTC others(15): Show TCTCGCTCTCGCTCTCGCTCTCG	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01071.hp1 HG01070.hp2 HG01071.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0092 a0001c0006t0093 a0001c0006t0092 a0001c0006t0093	a0001c0006t0092g0002 a0001c0006t0093g0002 a0001c0006t0092g0002 a0001c0006t0093g0002	2	294	0.0068	22	c.560 others(41): Show c.560+22687_560+22688insGCTCTCGCTCTCGCTCTCGCTC	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXK2_chr17_82514732_82609602	82525954	T T	TTCTTATG others(15): Show TTCTTATGTGGCCTGAATCCCAC	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0251 a0001c0001t0048g0251	1	308	0.0033	22	c.419 others(39): Show c.419+5647_419+5648insTCTTATGTGGCCTGAATCCCAC	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding	1/8			chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607537	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0015 a0001c0001t0010g0015	1	308	0.0033	22	c.60 others(33): Show c.6038_*6039insTATATATATATATATATATATA	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2936		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607537	G G	GTGTATAT others(15): Show GTGTATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0166 a0001c0001t0001g0166	1	308	0.0033	22	c.60 others(33): Show c.6038_*6039insTGTATATATATATATATATATA	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2936		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607537	G G	GTGTGTAT others(15): Show GTGTGTATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp2 homoSapiens_chm13v2.hp1 HG02717.hp2 homoSapiens_chm13v2.hp1	a0001 a0016 a0001 a0016	a0001c0001 a0016c0015 a0001c0001 a0016c0015	a0001c0001t0008 a0016c0015t0005 a0001c0001t0008 a0016c0015t0005	a0001c0001t0008g0134 a0016c0015t0005g0188 a0001c0001t0008g0134 a0016c0015t0005g0188	2	308	0.0065	22	c.60 others(33): Show c.6038_*6039insTGTGTATATATATATATATATA	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2936		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607555	A A	ATATATAT others(15): Show ATATATATATATATATATTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03491.hp1 HG03491.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0199 a0001c0001t0005g0199	1	308	0.0033	22	c.60 others(33): Show c.6056_*6057insTATATATATATATATATTTTTT	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2954		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607555	A A	ATATATAT others(15): Show ATATATATATATATATTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp2 NA19057.hp1 HG00642.hp2 NA19057.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0031 a0001c0001 a0005c0031	a0001c0001t0022 a0005c0031t0001 a0001c0001t0022 a0005c0031t0001	a0001c0001t0022g0068 a0005c0031t0001g0297 a0001c0001t0022g0068 a0005c0031t0001g0297	2	308	0.0065	22	c.60 others(33): Show c.6056_*6057insTATATATATATATATTTTTTTT	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2954		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607555	A A	ATATATAT others(15): Show ATATATATATATATTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0218 a0001c0001t0005g0218	1	308	0.0033	22	c.60 others(33): Show c.6056_*6057insTATATATATATATTTTTTTTTT	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2954		chr17	TogoVar
FOXN1_chr17_28501348_28543900	28523792	T T	TTCTCTCT others(15): Show TTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG03209.hp1 HG01884.hp2 HG03209.hp1	a0001 a0002 a0001 a0002	a0001c0005 a0002c0002 a0001c0005 a0002c0002	a0001c0005t0001 a0002c0002t0003 a0001c0005t0001 a0002c0002t0003	a0001c0005t0001g0051 a0002c0002t0003g0053 a0001c0005t0001g0051 a0002c0002t0003g0053	2	356	0.0056	22	c.-14 others(37): Show c.-14-145_-14-124dupTCTCTCTCTCTCTCTCTCTCTC	FOXN1	ENSG00000109101.8	transcript	ENST00000579795.6	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr17	TogoVar
FOXN1_chr17_28501348_28543900	28541743	T T	TAGCTAGC others(15): Show TAGCTAGCTGACTGTGGCTATGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0176 a0001c0001t0001g0176	1	356	0.0028	22	c.43 others(33): Show c.4307_*4308insAGCTAGCTGACTGTGGCTATGA	FOXN1	ENSG00000109101.8	transcript	ENST00000579795.6	protein_coding		2844		chr17	TogoVar
FOXN2_chr2_48309682_48384295	48309894	C C	CGTGTGTG others(15): Show CGTGTGTGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00621.hp2 HG02559.hp1 HG02965.hp2 others(5): Show HG00621.hp2 HG02559.hp1 HG02965.hp2 HG03209.hp2 HG03669.hp1 HG03704.hp1 HG03942.hp1 NA18990.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0005 a0001c0002t0002 others(1): Show a0001c0001t0001 a0001c0001t0005 a0001c0002t0002 a0001c0002t0003	a0001c0001t0001g0052 a0001c0001t0001g0214 a0001c0001t0001g0223 others(5): Show a0001c0001t0001g0052 a0001c0001t0001g0214 a0001c0001t0001g0223 a0001c0001t0005g0026 a0001c0001t0005g0029 a0001c0002t0002g0294 a0001c0002t0002g0314 a0001c0002t0003g0255	8	344	0.0233	22	c.-50 others(33): Show c.-5077_-5076insGTGTGTGTGTGTGTGTGTGTGT	FOXN2	ENSG00000170802.17	transcript	ENST00000340553.8	protein_coding		4787		chr2	TogoVar
FOXN3_chr14_89151177_89422233	89161556	C C	CGTGTGTG others(15): Show CGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0071 a0001c0001t0071	a0001c0001t0071g0186 a0001c0001t0071g0186	1	230	0.0044	22	c.83 others(31): Show c.836_*857dupACACACACACACACACACACAC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	6/6	857		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89191973	T T	TATATATA others(15): Show TATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02723.hp2 NA19043.hp1 HG02055.hp1 HG02723.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0077 a0001c0001t0088 a0001c0001t0032 a0001c0001t0077 a0001c0001t0088	a0001c0001t0032g0006 a0001c0001t0077g0187 a0001c0001t0088g0095 a0001c0001t0032g0006 a0001c0001t0077g0187 a0001c0001t0088g0095	3	230	0.0130	22	c.746 others(41): Show c.746-11168_746-11167insTTATATATATATATATATATAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	4/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89288724	C C	CTCTCTCT others(15): Show CTCTCTCTCTCTCTATATATATA	intron_variant intron_variant	MODIFIER	HG01517.hp2 HG01517.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0096 a0001c0001t0096	a0001c0001t0096g0151 a0001c0001t0096g0151	1	230	0.0044	22	c.681 others(39): Show c.681-7711_681-7710insTATATATATAGAGAGAGAGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89312284	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02109.hp2 NA19240.hp2 HG02109.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0068 a0001c0001t0076 a0001c0001t0068 a0001c0001t0076	a0001c0001t0068g0169 a0001c0001t0076g0163 a0001c0001t0068g0169 a0001c0001t0076g0163	2	230	0.0087	22	c.681 others(41): Show c.681-31271_681-31270insTTTTTTTTTTTTTTTTTTTTTT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89329249	A A	ACCCCCCC others(15): Show ACCCCCCCCCACCCCCCCCCCCC	intron_variant intron_variant	MODIFIER	NA18997.hp1 NA18997.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0080 a0001c0001t0007g0080	1	230	0.0044	22	c.680 others(41): Show c.680+21422_680+21423insGGGGGGGGGGGGTGGGGGGGGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360354	G G	GAGGGAGG others(15): Show GAGGGAGGGAGGGAGAAAGGGAA	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0174 a0001c0001t0001g0174	1	230	0.0044	22	c.544 others(39): Show c.544-9547_544-9546insTTCCCTTTCTCCCTCCCTCCCT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89363947	A A	AATATATA others(15): Show AATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0065 a0001c0001t0065	a0001c0001t0065g0201 a0001c0001t0065g0201	1	230	0.0044	22	c.544 others(41): Show c.544-13161_544-13140dupATATATATATATATATATATAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89377020	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0133 a0001c0001t0013g0133	1	230	0.0044	22	c.544 others(41): Show c.544-26234_544-26213dupTTTTTTTTTTTTTTTTTTTTTT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89415847	T T	TACACACA others(15): Show TACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02897.hp2 HG02965.hp2 others(3): Show HG02135.hp1 HG02897.hp2 HG02965.hp2 HG03195.hp1 HG03225.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0049 a0001c0002t0011 a0001c0002t0023	a0001c0001t0002g0104 a0001c0001t0003g0229 a0001c0001t0004g0103 others(3): Show a0001c0001t0002g0104 a0001c0001t0003g0229 a0001c0001t0004g0103 a0001c0001t0049g0230 a0001c0002t0011g0111 a0001c0002t0023g0112	6	230	0.0261	22	c.-15 others(39): Show c.-15+1002_-15+1023dupGTGTGTGTGTGTGTGTGTGTGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	1/5			chr14	TogoVar
FOXN4_chr12_109272978_109314284	109286767	G G	GGCGGGGC others(15): Show GGCGGGGCAGGAGGTGGGGCAGT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0236 a0001c0001t0001g0236	1	368	0.0027	22	c.597 others(35): Show c.597-24_597-23insACTGCCCCACCTCCTGCCCCGC	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding	6/9			chr12	TogoVar
FOXP1_chr3_70949708_71588728	71085735	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG03139.hp2 HG03453.hp2 others(1): Show HG02451.hp2 HG03139.hp2 HG03453.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0013 a0001c0001t0032 others(1): Show a0001c0001t0006 a0001c0001t0013 a0001c0001t0032 a0001c0001t0076	a0001c0001t0006g0054 a0001c0001t0013g0012 a0001c0001t0032g0089 others(1): Show a0001c0001t0006g0054 a0001c0001t0013g0012 a0001c0001t0032g0089 a0001c0001t0076g0024	4	96	0.0417	22	c.282 others(41): Show c.282+26800_282+26801insAAAAAAAAAAAAAAAAAAAAAA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	7/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71091129	G G	GTGTGTGT others(15): Show GTGTGTGTGTGTGTGTGTGTGTA	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG02055.hp1 HG02258.hp1 others(5): Show HG01169.hp1 HG02055.hp1 HG02258.hp1 HG02258.hp2 HG02647.hp1 HG02976.hp1 HG03704.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 others(5): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0008 a0001c0001t0027 a0001c0001t0030 a0001c0001t0047 a0001c0001t0060 a0001c0001t0069	a0001c0001t0001g0021 a0001c0001t0005g0022 a0001c0001t0008g0036 others(5): Show a0001c0001t0001g0021 a0001c0001t0005g0022 a0001c0001t0008g0036 a0001c0001t0027g0046 a0001c0001t0030g0002 a0001c0001t0047g0068 a0001c0001t0060g0037 a0001c0001t0069g0027	8	96	0.0833	22	c.282 others(41): Show c.282+21406_282+21407insTACACACACACACACACACACA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	7/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71208536	T T	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG04228.hp2 HG03579.hp1 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0068 a0001c0001t0073 a0001c0001t0068 a0001c0001t0073	a0001c0001t0068g0096 a0001c0001t0073g0072 a0001c0001t0068g0096 a0001c0001t0073g0072	2	96	0.0208	22	c.-11 others(41): Show c.-11-10166_-11-10145dupCACACACACACACACACACACA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	5/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71232877	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0087 a0001c0001t0059g0087	1	96	0.0104	22	c.-11 others(41): Show c.-11-34486_-11-34485insTTTTTTTTTTTTTTTTTTTTTT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	5/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71544028	C C	CACATATA others(15): Show CACATATATGTGTGTATACACAT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02818.hp1 HG00735.hp2 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0046 a0001c0001t0081 a0001c0001t0046 a0001c0001t0081	a0001c0001t0046g0017 a0001c0001t0081g0018 a0001c0001t0046g0017 a0001c0001t0081g0018	2	96	0.0208	22	c.-29 others(43): Show c.-298+37520_-298+37521insATGTGTATACACACATATATGT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	2/20			chr3	TogoVar
FOXP4_chr6_41541381_41607384	41570079	G G	GACACACA others(15): Show GACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02559.hp1 HG03139.hp2 others(1): Show HG02145.hp2 HG02559.hp1 HG03139.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0002 a0001c0001t0004 a0001c0004t0010 others(1): Show a0001c0001t0002 a0001c0001t0004 a0001c0004t0010 a0001c0004t0015	a0001c0001t0002g0053 a0001c0001t0004g0052 a0001c0004t0010g0270 others(1): Show a0001c0001t0002g0053 a0001c0001t0004g0052 a0001c0004t0010g0270 a0001c0004t0015g0253	4	356	0.0112	22	c.204 others(39): Show c.204+4132_204+4153dupACACACACACACACACACACAC	FOXP4	ENSG00000137166.18	transcript	ENST00000307972.10	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr6	TogoVar
FRAS1_chr4_78052323_78549269	78065081	T T	TATATATA others(15): Show TATATATATATATACACACACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02922.hp2 HG01884.hp2 HG02922.hp2	a0005 a0081 a0005 a0081	a0005c0004 a0081c0109 a0005c0004 a0081c0109	a0005c0004t0003 a0081c0109t0006 a0005c0004t0003 a0081c0109t0006	a0005c0004t0003g0082 a0081c0109t0006g0083 a0005c0004t0003g0082 a0081c0109t0006g0083	2	178	0.0112	22	c.77- others(35): Show c.77-901_77-900insTATATATATACACACACACATA	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	1/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78065081	T T	TATATATA others(15): Show TATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02559.hp1 HG03491.hp1 HG01175.hp1 HG02559.hp1 HG03491.hp1	a0001 a0016 a0023 a0001 a0016 a0023	a0001c0001 a0016c0014 a0023c0021 a0001c0001 a0016c0014 a0023c0021	a0001c0001t0005 a0016c0014t0001 a0023c0021t0015 a0001c0001t0005 a0016c0014t0001 a0023c0021t0015	a0001c0001t0005g0106 a0016c0014t0001g0071 a0023c0021t0015g0105 a0001c0001t0005g0106 a0016c0014t0001g0071 a0023c0021t0015g0105	3	178	0.0169	22	c.77- others(35): Show c.77-901_77-900insTATATATATATACACACACATA	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	1/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78161768	A A	AAAAAAAA others(15): Show AAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02630.hp1 HG01891.hp2 HG02630.hp1	a0024 a0092 a0024 a0092	a0024c0024 a0092c0121 a0024c0024 a0092c0121	a0024c0024t0007 a0092c0121t0012 a0024c0024t0007 a0092c0121t0012	a0024c0024t0007g0153 a0092c0121t0012g0154 a0024c0024t0007g0153 a0092c0121t0012g0154	2	178	0.0112	22	c.109 others(41): Show c.109-75738_109-75737insAAAAAAAAAAAAAAAAAGAAAA	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	2/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78249064	C C	CATATATA others(15): Show CATATATATATATATATATGCAT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01071.hp2 HG03017.hp2 HG00140.hp2 HG01071.hp2 HG03017.hp2	a0014 a0019 a0020 a0014 a0019 a0020	a0014c0008 a0019c0015 a0020c0092 a0014c0008 a0019c0015 a0020c0092	a0014c0008t0002 a0019c0015t0009 a0020c0092t0005 a0014c0008t0002 a0019c0015t0009 a0020c0092t0005	a0014c0008t0002g0062 a0019c0015t0009g0130 a0020c0092t0005g0090 a0014c0008t0002g0062 a0019c0015t0009g0130 a0020c0092t0005g0090	3	178	0.0169	22	c.310 others(39): Show c.310-3310_310-3309insGCATATATATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	4/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78249064	C C	CATATATA others(15): Show CATATATATATATATATGCATAT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00558.hp1 HG00423.hp1 HG00558.hp1	a0001 a0003 a0001 a0003	a0001c0013 a0003c0033 a0001c0013 a0003c0033	a0001c0013t0003 a0003c0033t0003 a0001c0013t0003 a0003c0033t0003	a0001c0013t0003g0076 a0003c0033t0003g0059 a0001c0013t0003g0076 a0003c0033t0003g0059	2	178	0.0112	22	c.310 others(39): Show c.310-3312_310-3311insGCATATATATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	4/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78312179	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0099 a0099	a0099c0069 a0099c0069	a0099c0069t0008 a0099c0069t0008	a0099c0069t0008g0101 a0099c0069t0008g0101	1	178	0.0056	22	c.167 others(41): Show c.1679-3395_1679-3394insATATATATATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	15/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78312879	G G	GAGAGAGA others(15): Show GAGAGAGAGAGAGAGAGAGAGAA	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0132 a0001c0001t0009g0132	1	178	0.0056	22	c.167 others(41): Show c.1679-2712_1679-2711insGAGAGAGAGAGAGAGAGAAAGA	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	15/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78483768	C C	CTATATAT others(15): Show CTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00558.hp2 HG01071.hp2 others(6): Show HG00140.hp1 HG00558.hp2 HG01071.hp2 HG01175.hp2 HG02135.hp1 HG02698.hp1 HG03942.hp1 HG04204.hp1 NA18971.hp2	a0001 a0003 a0007 others(4): Show a0001 a0003 a0007 a0019 a0020 a0030 a0054	a0001c0001 a0003c0002 a0007c0010 others(4): Show a0001c0001 a0003c0002 a0007c0010 a0019c0015 a0020c0092 a0030c0030 a0054c0065	a0001c0001t0002 a0001c0001t0009 a0001c0001t0010 others(6): Show a0001c0001t0002 a0001c0001t0009 a0001c0001t0010 a0003c0002t0002 a0007c0010t0006 a0019c0015t0002 a0020c0092t0005 a0030c0030t0002 a0054c0065t0002	a0001c0001t0002g0088 a0001c0001t0009g0125 a0001c0001t0010g0142 others(6): Show a0001c0001t0002g0088 a0001c0001t0009g0125 a0001c0001t0010g0142 a0003c0002t0002g0028 a0007c0010t0006g0037 a0019c0015t0002g0085 a0020c0092t0005g0090 a0030c0030t0002g0029 a0054c0065t0002g0051	9	178	0.0506	22	c.875 others(41): Show c.8752+1234_8752+1235insATATATATATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	58/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FREM1_chr9_14732152_14915428	14780433	G G	GAAAAAAA others(15): Show GAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02145.hp2 HG02965.hp1 HG01496.hp1 HG02145.hp2 HG02965.hp1	a0006 a0014 a0043 a0006 a0014 a0043	a0006c0083 a0014c0070 a0043c0216 a0006c0083 a0014c0070 a0043c0216	a0006c0083t0001 a0014c0070t0001 a0043c0216t0012 a0006c0083t0001 a0014c0070t0001 a0043c0216t0012	a0006c0083t0001g0251 a0014c0070t0001g0159 a0043c0216t0012g0053 a0006c0083t0001g0251 a0014c0070t0001g0159 a0043c0216t0012g0053	3	346	0.0087	22	c.444 others(41): Show c.4442+3936_4442+3937insTTTTTTTTTTTTTTTTTTTTTT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	24/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14825547	G G	GTGTATAT others(15): Show GTGTATATATATATACATATATA	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01074.hp2	a0039 a0039	a0039c0171 a0039c0171	a0039c0171t0001 a0039c0171t0001	a0039c0171t0001g0088 a0039c0171t0001g0088	1	346	0.0029	22	c.188 others(39): Show c.1882-556_1882-555insTATATATGTATATATATATACA	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	10/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14825547	G G	GTGTGTAT others(15): Show GTGTGTATATATATATACATATA	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02273.hp2 HG02071.hp2 HG02273.hp2	a0010 a0099 a0010 a0099	a0010c0072 a0099c0191 a0010c0072 a0099c0191	a0010c0072t0001 a0099c0191t0002 a0010c0072t0001 a0099c0191t0002	a0010c0072t0001g0305 a0099c0191t0002g0023 a0010c0072t0001g0305 a0099c0191t0002g0023	2	346	0.0058	22	c.188 others(39): Show c.1882-556_1882-555insTATATGTATATATATATACACA	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	10/36			chr9	TogoVar

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