Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
IRS1_chr2_226726312_226804820	226728076	G G	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp2 HG03041.hp1 HG03688.hp2 HG02145.hp2 HG03041.hp1 HG03688.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0004 a0001c0002 a0002c0004	a0001c0002t0041 a0001c0002t0042 a0002c0004t0006 a0001c0002t0041 a0001c0002t0042 a0002c0004t0006	a0001c0002t0041g0077 a0001c0002t0042g0078 a0002c0004t0006g0088 a0001c0002t0041g0077 a0001c0002t0042g0078 a0002c0004t0006g0088	3	278	0.0108	22	c.81 others(33): Show c.8195_*8196insACACACACACACACACACACAC	IRS1	ENSG00000169047.6	transcript	ENST00000305123.6	protein_coding		3235		chr2	TogoVar
IRS1_chr2_226726312_226804820	226766163	A A	ATATATAT others(15): Show ATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0199 a0001c0001t0003g0199	1	278	0.0036	22	c.21 others(41): Show c.21+28825_*21+28826insAAAAAAAAAATATATATATATA	IRS1	ENSG00000169047.6	transcript	ENST00000305123.6	protein_coding	1/1			chr2	TogoVar
IRS1_chr2_226726312_226804820	226766163	A A	ATATATAT others(15): Show ATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0245 a0001c0002t0002g0245	1	278	0.0036	22	c.21 others(41): Show c.21+28825_*21+28826insAAAAAAAAAAAATATATATATA	IRS1	ENSG00000169047.6	transcript	ENST00000305123.6	protein_coding	1/1			chr2	TogoVar
IRS1_chr2_226726312_226804820	226766163	A A	ATATATAT others(15): Show ATATATATATTATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0048 a0001c0001t0031g0048	1	278	0.0036	22	c.21 others(41): Show c.21+28825_*21+28826insAAAAAAAAAAATAATATATATA	IRS1	ENSG00000169047.6	transcript	ENST00000305123.6	protein_coding	1/1			chr2	TogoVar
IRS1_chr2_226726312_226804820	226766163	A A	ATATATAT others(15): Show ATATATATATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG03831.hp2 HG03927.hp2 others(3): Show HG02735.hp1 HG03831.hp2 HG03927.hp2 NA18957.hp2 NA18978.hp1 NA19068.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0003 a0003c0006 others(1): Show a0001c0001 a0001c0003 a0003c0006 a0004c0007	a0001c0001t0001 a0001c0001t0023 a0001c0003t0029 others(3): Show a0001c0001t0001 a0001c0001t0023 a0001c0003t0029 a0001c0003t0030 a0003c0006t0001 a0004c0007t0001	a0001c0001t0001g0143 a0001c0001t0023g0269 a0001c0003t0029g0042 others(3): Show a0001c0001t0001g0143 a0001c0001t0023g0269 a0001c0003t0029g0042 a0001c0003t0030g0043 a0003c0006t0001g0103 a0004c0007t0001g0101	6	278	0.0216	22	c.21 others(41): Show c.21+28825_*21+28826insAAAAAAAAAAAAAATATATATA	IRS1	ENSG00000169047.6	transcript	ENST00000305123.6	protein_coding	1/1			chr2	TogoVar
IRX1_chr5_3590832_3606403	3593836	A A	ACTGTAGT others(15): Show ACTGTAGTTTGCTGAACAAGGAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18985.hp1 NA18985.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	456	0.0022	22	c.-22 others(33): Show c.-2270_-2269insCTGTAGTTTGCTGAACAAGGAC	IRX1	ENSG00000170549.4	transcript	ENST00000302006.4	protein_coding		1995		chr5	TogoVar
IRX6_chr16_55319203_55335756	55325531	G G	GAAAGAAA others(15): Show GAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02055.hp2 NA19089.hp2 HG02055.hp2 NA19089.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0129 a0001c0001t0002g0119 a0001c0001t0001g0129 a0001c0001t0002g0119	2	448	0.0045	22	c.45+ others(35): Show c.45+396_45+397insAAGAAAGAAAGAAAGAAAGAAA	IRX6	ENSG00000159387.8	transcript	ENST00000290552.8	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr16	TogoVar
IRX6_chr16_55319203_55335756	55325531	G G	GAAGGAAG others(15): Show GAAGGAAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG03130.hp2 HG03453.hp1 HG02717.hp2 HG03130.hp2 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0021 a0001c0001t0006g0021	3	448	0.0067	22	c.45+ others(35): Show c.45+396_45+397insAGGAAGGAAGGAAGGAAGGAAA	IRX6	ENSG00000159387.8	transcript	ENST00000290552.8	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr16	TogoVar
IRX6_chr16_55319203_55335756	55325532	A A	AAGGAAGG others(15): Show AAGGAAGGAAGGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG02083.hp2 NA18994.hp2 NA19067.hp2 HG02083.hp2 NA18994.hp2 NA19067.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0040 a0003c0003t0003g0103 a0003c0003t0003g0040 a0003c0003t0003g0103	3	448	0.0067	22	c.45+ others(35): Show c.45+396_45+397insAGGAAGGAAGGAAGGAAGGAAG	IRX6	ENSG00000159387.8	transcript	ENST00000290552.8	protein_coding	1/5			chr16	TogoVar
ISM1_chr20_13216274_13305651	13257023	T T	TGAGAGAA others(15): Show TGAGAGAAGAGAATAATAAAGAG	intron_variant intron_variant	MODIFIER	NA18747.hp1 NA18747.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0061 a0001c0001t0005g0061	1	396	0.0025	22	c.139 others(41): Show c.139-13476_139-13455dupGAAGAGAATAATAAAGAGGAGA	ISM1	ENSG00000101230.6	transcript	ENST00000262487.5	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr20	TogoVar
ITCH_chr20_34358273_34516773	34407402	G G	GATTACAG others(15): Show GATTACAGGCGCCTGCCACCACA	intron_variant intron_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0079 a0001c0001t0002g0079	1	294	0.0034	22	c.71- others(37): Show c.71-1248_71-1227dupATTACAGGCGCCTGCCACCACA	ITCH	ENSG00000078747.17	transcript	ENST00000374864.10	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr20	TogoVar
ITFG1_chr16_47149391_47466063	47315768	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02970.hp1 HG03516.hp2 HG02723.hp2 HG02970.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0002t0002g0073 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0002t0002g0073	3	110	0.0273	22	c.803 others(39): Show c.803-1946_803-1945insATATATATATATATATATATAT	ITFG1	ENSG00000129636.13	transcript	ENST00000320640.11	protein_coding	8/17			chr16	TogoVar
ITFG1_chr16_47149391_47466063	47315775	A A	ATATATAT others(15): Show ATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA20129.hp1 HG01884.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0097 a0001c0001t0003g0098	2	110	0.0182	22	c.803 others(39): Show c.803-1953_803-1952insCATATATATATATATATATATA	ITFG1	ENSG00000129636.13	transcript	ENST00000320640.11	protein_coding	8/17			chr16	TogoVar
ITFG1_chr16_47149391_47466063	47376964	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0101 a0001c0001t0001g0101	1	110	0.0091	22	c.656 others(39): Show c.656-1046_656-1025dupTTTTTTTTTTTTTTTTTTTTTT	ITFG1	ENSG00000129636.13	transcript	ENST00000320640.11	protein_coding	6/17			chr16	TogoVar
ITFG1_chr16_47149391_47466063	47396522	T T	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02717.hp2 HG01496.hp1 HG02717.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0001 a0001c0002t0002	a0001c0002t0001g0067 a0001c0002t0002g0090 a0001c0002t0001g0067 a0001c0002t0002g0090	2	110	0.0182	22	c.656 others(41): Show c.656-20583_656-20582insCACACACACACACACACACACA	ITFG1	ENSG00000129636.13	transcript	ENST00000320640.11	protein_coding	6/17			chr16	TogoVar
ITFG1_chr16_47149391_47466063	47409404	A A	ATATATAT others(15): Show ATATATATATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0076 a0001c0002t0002g0076	1	110	0.0091	22	c.655 others(41): Show c.655+19399_655+19400insAAAAAAAAAAAAAATATATATA	ITFG1	ENSG00000129636.13	transcript	ENST00000320640.11	protein_coding	6/17			chr16	TogoVar
ITGA11_chr15_68291532_68437163	68302055	A A	AGTGTGTG others(15): Show AGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18961.hp1 NA18961.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0051 a0003c0004t0051	a0003c0004t0051g0134 a0003c0004t0051g0134	1	242	0.0041	22	c.98 others(32): Show c.982_*1003dupACACACACACACACACACACAC	ITGA11	ENSG00000137809.17	transcript	ENST00000315757.9	protein_coding	30/30	1003		chr15	TogoVar
ITGA11_chr15_68291532_68437163	68400885	A A	AAATATTA others(15): Show AAATATTATATTATATAATATAT	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	a0012 a0012	a0012c0027 a0012c0027	a0012c0027t0062 a0012c0027t0063 a0012c0027t0062 a0012c0027t0063	a0012c0027t0062g0237 a0012c0027t0063g0236 a0012c0027t0062g0237 a0012c0027t0063g0236	2	242	0.0083	22	c.164 others(39): Show c.164+2032_164+2033insATATATTATATAATATAATATT	ITGA11	ENSG00000137809.17	transcript	ENST00000315757.9	protein_coding	2/29			chr15	TogoVar
ITGA11_chr15_68291532_68437163	68400901	T T	TATATTAT others(15): Show TATATTATATAATAAATATTATA	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02273.hp2 HG01496.hp2 HG02273.hp2	a0001 a0003 a0001 a0003	a0001c0003 a0003c0004 a0001c0003 a0003c0004	a0001c0003t0084 a0003c0004t0022 a0001c0003t0084 a0003c0004t0022	a0001c0003t0084g0220 a0003c0004t0022g0089 a0001c0003t0084g0220 a0003c0004t0022g0089	2	242	0.0083	22	c.164 others(39): Show c.164+1995_164+2016dupTATAATATTTATTATATAATAT	ITGA11	ENSG00000137809.17	transcript	ENST00000315757.9	protein_coding	2/29			chr15	TogoVar
ITGA11_chr15_68291532_68437163	68433478	G G	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp1 HG00642.hp1 HG00735.hp1 others(26): Show HG00609.hp1 HG00642.hp1 HG00735.hp1 HG01106.hp1 HG01109.hp1 HG01361.hp2 HG01515.hp2 HG01884.hp1 HG01891.hp2 HG02004.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02602.hp1 HG02622.hp2 HG02647.hp2 HG02683.hp1 HG02965.hp2 HG03209.hp2 HG03239.hp2 HG03453.hp2 HG03704.hp2 NA18906.hp1 NA18939.hp1 NA18953.hp2 NA18959.hp1 NA19056.hp1 NA19084.hp2 NA19090.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0005 a0006 a0010	a0001c0001 a0001c0002 a0001c0003 others(17): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0023 a0001c0036 a0001c0037 a0001c0041 a0001c0063 a0002c0008 a0002c0011 a0002c0055 a0003c0004 a0003c0014 a0004c0010 a0004c0065 a0004c0076 a0005c0015 a0006c0047 a0010c0021	a0001c0001t0012 a0001c0001t0022 a0001c0001t0065 others(24): Show a0001c0001t0012 a0001c0001t0022 a0001c0001t0065 a0001c0002t0006 a0001c0002t0033 a0001c0003t0013 a0001c0005t0109 a0001c0023t0003 a0001c0023t0030 a0001c0036t0114 a0001c0037t0004 a0001c0041t0012 a0001c0063t0029 a0002c0008t0008 a0002c0011t0001 a0002c0055t0007 a0003c0004t0019 a0003c0004t0064 a0003c0014t0005 a0003c0014t0011 a0003c0014t0108 a0004c0010t0015 a0004c0065t0016 a0004c0076t0015 a0005c0015t0093 a0006c0047t0070 a0010c0021t0004	a0001c0001t0012g0214 a0001c0001t0022g0193 a0001c0001t0065g0198 others(26): Show a0001c0001t0012g0214 a0001c0001t0022g0193 a0001c0001t0065g0198 a0001c0002t0006g0206 a0001c0002t0033g0208 a0001c0002t0033g0219 a0001c0003t0013g0186 a0001c0005t0109g0127 a0001c0023t0003g0013 a0001c0023t0030g0012 a0001c0036t0114g0211 a0001c0037t0004g0191 a0001c0041t0012g0014 a0001c0063t0029g0002 a0002c0008t0008g0192 a0002c0011t0001g0124 a0002c0055t0007g0200 a0003c0004t0019g0217 a0003c0004t0064g0203 a0003c0014t0005g0009 a0003c0014t0011g0179 a0003c0014t0108g0008 a0004c0010t0015g0129 a0004c0010t0015g0130 a0004c0065t0016g0116 a0004c0076t0015g0115 a0005c0015t0093g0205 a0006c0047t0070g0114 a0010c0021t0004g0187	29	242	0.1198	22	c.-14 others(33): Show c.-1413_-1412insACACACACACACACACACACAC	ITGA11	ENSG00000137809.17	transcript	ENST00000315757.9	protein_coding		1316		chr15	TogoVar
ITGA1_chr5_52782916_52964209	52872575	A A	ATTTTTTT others(15): Show ATTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00621.hp2 HG01515.hp1 others(14): Show HG00597.hp1 HG00621.hp2 HG01515.hp1 HG01978.hp1 HG02071.hp1 HG02071.hp2 HG02293.hp1 HG03492.hp1 HG03704.hp1 HG03942.hp1 NA18956.hp1 NA18957.hp1 NA18986.hp1 NA18987.hp2 NA18989.hp1 NA18990.hp1 NA18994.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0010	a0001c0002 a0001c0003 a0001c0004 others(5): Show a0001c0002 a0001c0003 a0001c0004 a0002c0010 a0003c0008 a0003c0011 a0003c0014 a0010c0027	a0001c0002t0004 a0001c0003t0001 a0001c0003t0006 others(14): Show a0001c0002t0004 a0001c0003t0001 a0001c0003t0006 a0001c0003t0046 a0001c0003t0066 a0001c0004t0011 a0001c0004t0012 a0001c0004t0013 a0001c0004t0031 a0001c0004t0084 a0002c0010t0019 a0003c0008t0003 a0003c0008t0012 a0003c0008t0086 a0003c0011t0008 a0003c0014t0003 a0010c0027t0003	a0001c0002t0004g0205 a0001c0003t0001g0131 a0001c0003t0006g0101 others(14): Show a0001c0002t0004g0205 a0001c0003t0001g0131 a0001c0003t0006g0101 a0001c0003t0046g0279 a0001c0003t0066g0215 a0001c0004t0011g0294 a0001c0004t0012g0306 a0001c0004t0013g0302 a0001c0004t0031g0202 a0001c0004t0084g0114 a0002c0010t0019g0151 a0003c0008t0003g0077 a0003c0008t0012g0295 a0003c0008t0086g0108 a0003c0011t0008g0296 a0003c0014t0003g0138 a0010c0027t0003g0130	17	322	0.0528	22	c.624 others(39): Show c.624+6776_624+6777insTTTTTTTTTTTTTTTTTTTTTT	ITGA1	ENSG00000213949.10	transcript	ENST00000282588.7	protein_coding	6/28		INFO_REALIGN_3_PRIME	chr5	TogoVar
ITGA1_chr5_52782916_52964209	52962755	C C	CACACACA others(15): Show CACACACACATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18948.hp2 NA18948.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0170 a0001c0002t0003g0170	1	322	0.0031	22	c.10 others(35): Show c.10304_*10305insACACACACATATATATATATAT	ITGA1	ENSG00000213949.10	transcript	ENST00000282588.7	protein_coding		3547		chr5	TogoVar
ITGA1_chr5_52782916_52964209	52962755	C C	CACACATA others(15): Show CACACATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02056.hp2 NA18747.hp1 NA18987.hp2 HG02056.hp2 NA18747.hp1 NA18987.hp2	a0001 a0003 a0010 a0001 a0003 a0010	a0001c0002 a0003c0005 a0010c0027 a0001c0002 a0003c0005 a0010c0027	a0001c0002t0014 a0003c0005t0003 a0010c0027t0003 a0001c0002t0014 a0003c0005t0003 a0010c0027t0003	a0001c0002t0014g0179 a0003c0005t0003g0166 a0010c0027t0003g0130 a0001c0002t0014g0179 a0003c0005t0003g0166 a0010c0027t0003g0130	3	322	0.0093	22	c.10 others(35): Show c.10304_*10305insACACATATATATATATATATAT	ITGA1	ENSG00000213949.10	transcript	ENST00000282588.7	protein_coding		3547		chr5	TogoVar
ITGA1_chr5_52782916_52964209	52962755	C C	CACATATA others(15): Show CACATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01981.hp1 HG01981.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0003 a0003c0005t0003	a0003c0005t0003g0079 a0003c0005t0003g0079	1	322	0.0031	22	c.10 others(35): Show c.10304_*10305insACATATATATATATATATATAT	ITGA1	ENSG00000213949.10	transcript	ENST00000282588.7	protein_coding		3547		chr5	TogoVar
ITGA1_chr5_52782916_52964209	52962755	C C	CATATATA others(15): Show CATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp2 HG03942.hp1 NA18973.hp1 HG00438.hp2 HG03942.hp1 NA18973.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0004 a0003c0011 a0001c0002 a0001c0004 a0003c0011	a0001c0002t0003 a0001c0004t0084 a0003c0011t0008 a0001c0002t0003 a0001c0004t0084 a0003c0011t0008	a0001c0002t0003g0113 a0001c0004t0084g0114 a0003c0011t0008g0305 a0001c0002t0003g0113 a0001c0004t0084g0114 a0003c0011t0008g0305	3	322	0.0093	22	c.10 others(35): Show c.10304_*10305insATATATATATATATATATATAT	ITGA1	ENSG00000213949.10	transcript	ENST00000282588.7	protein_coding		3547		chr5	TogoVar
ITGA2B_chr17_44367181_44394649	44368146	A A	ATATATAT others(15): Show ATATATATATATATATATATTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18947.hp2 NA18947.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	354	0.0028	22	c.42 others(33): Show c.4217_*4218insAAAATATATATATATATATATA	ITGA2B	ENSG00000005961.19	transcript	ENST00000262407.6	protein_coding		4034		chr17	TogoVar
ITGA2B_chr17_44367181_44394649	44368146	A A	ATATATAT others(15): Show ATATATATATATATATATTATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp1 HG00423.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	354	0.0028	22	c.42 others(33): Show c.4217_*4218insATATAATATATATATATATATA	ITGA2B	ENSG00000005961.19	transcript	ENST00000262407.6	protein_coding		4034		chr17	TogoVar
ITGA2_chr5_52984352_53099779	53044274	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02132.hp1 NA18993.hp1 HG02132.hp1 NA18993.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0007 a0002c0003t0007	a0002c0003t0007g0072 a0002c0003t0007g0080 a0002c0003t0007g0072 a0002c0003t0007g0080	2	398	0.0050	22	c.296 others(37): Show c.296-716_296-695dupAAAAAAAAAAAAAAAAAAAAAA	ITGA2	ENSG00000164171.11	transcript	ENST00000296585.10	protein_coding	3/29		INFO_REALIGN_3_PRIME	chr5	TogoVar
ITGA4_chr2_181452386_181543940	181526821	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG04199.hp2 HG02615.hp2 HG04199.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0033 a0001c0001t0002g0118 a0001c0001t0001g0033 a0001c0001t0002g0118	2	368	0.0054	22	c.234 others(39): Show c.2340-465_2340-444dupTTTTTTTTTTTTTTTTTTTTTT	ITGA4	ENSG00000115232.14	transcript	ENST00000397033.7	protein_coding	21/27		INFO_REALIGN_3_PRIME	chr2	TogoVar
ITGA6_chr2_172422586_172511459	172506810	T T	TACACACA others(15): Show TACACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00438.hp2 HG00544.hp1 others(4): Show HG00323.hp2 HG00438.hp2 HG00544.hp1 HG02074.hp1 HG03654.hp2 HG04228.hp2 NA18946.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0005 a0001c0001 a0001c0002 a0002c0005	a0001c0001t0003 a0001c0002t0033 a0002c0005t0002 others(3): Show a0001c0001t0003 a0001c0002t0033 a0002c0005t0002 a0002c0005t0003 a0002c0005t0021 a0002c0005t0034	a0001c0001t0003g0104 a0001c0002t0033g0226 a0002c0005t0002g0217 others(4): Show a0001c0001t0003g0104 a0001c0002t0033g0226 a0002c0005t0002g0217 a0002c0005t0003g0098 a0002c0005t0003g0327 a0002c0005t0021g0175 a0002c0005t0034g0269	7	352	0.0199	22	c.25 others(33): Show c.2558_*2559insACACACACACACACACACACAC	ITGA6	ENSG00000091409.16	transcript	ENST00000442250.6	protein_coding		352		chr2	TogoVar
ITGA6_chr2_172422586_172511459	172506840	C C	CACACACA others(15): Show CACACACACACACACACACACAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp2 HG02602.hp2 NA19091.hp2 HG02135.hp2 HG02602.hp2 NA19091.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0016 a0001c0002t0002 a0001c0002t0016	a0001c0002t0002g0145 a0001c0002t0002g0147 a0001c0002t0016g0156 a0001c0002t0002g0145 a0001c0002t0002g0147 a0001c0002t0016g0156	3	352	0.0085	22	c.25 others(33): Show c.2588_*2589insACACACACACACACACACACAT	ITGA6	ENSG00000091409.16	transcript	ENST00000442250.6	protein_coding		382		chr2	TogoVar
ITGA6_chr2_172422586_172511459	172506840	C C	CACACACA others(15): Show CACACACACACACACACACATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02273.hp1 HG06807.hp2 NA18941.hp1 HG02273.hp1 HG06807.hp2 NA18941.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0188 a0001c0002t0002g0210 a0001c0002t0002g0298 a0001c0002t0002g0188 a0001c0002t0002g0210 a0001c0002t0002g0298	3	352	0.0085	22	c.25 others(33): Show c.2588_*2589insACACACACACACACACACATAT	ITGA6	ENSG00000091409.16	transcript	ENST00000442250.6	protein_coding		382		chr2	TogoVar
ITGA6_chr2_172422586_172511459	172506840	C C	CACACACA others(15): Show CACACACACACACACACATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp2 HG01975.hp1 HG02040.hp1 others(8): Show HG00673.hp2 HG01975.hp1 HG02040.hp1 HG02083.hp1 HG04184.hp2 NA18943.hp2 NA18990.hp1 NA18993.hp2 NA19004.hp1 NA19054.hp2 NA19088.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0018 a0001c0002t0002 a0001c0002t0018	a0001c0002t0002g0179 a0001c0002t0002g0180 a0001c0002t0002g0183 others(8): Show a0001c0002t0002g0179 a0001c0002t0002g0180 a0001c0002t0002g0183 a0001c0002t0002g0186 a0001c0002t0002g0191 a0001c0002t0002g0199 a0001c0002t0002g0227 a0001c0002t0002g0320 a0001c0002t0002g0324 a0001c0002t0018g0182 a0001c0002t0018g0228	11	352	0.0313	22	c.25 others(33): Show c.2588_*2589insACACACACACACACACATATAT	ITGA6	ENSG00000091409.16	transcript	ENST00000442250.6	protein_coding		382		chr2	TogoVar
ITGA6_chr2_172422586_172511459	172506840	C C	CACACACA others(15): Show CACACACACACACACATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18989.hp2 NA18989.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0318 a0001c0002t0002g0318	1	352	0.0028	22	c.25 others(33): Show c.2588_*2589insACACACACACACACATATATAT	ITGA6	ENSG00000091409.16	transcript	ENST00000442250.6	protein_coding		382		chr2	TogoVar
ITGA8_chr10_15508954_15724922	15549201	G G	GTTTTTTT others(15): Show GTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA18940.hp2 HG01978.hp1 NA18940.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0007 a0003c0003t0007 a0001c0001t0007 a0003c0003t0007	a0001c0001t0007g0008 a0003c0003t0007g0011 a0001c0001t0007g0008 a0003c0003t0007g0011	2	220	0.0091	22	c.276 others(39): Show c.2767-655_2767-634dupAAAAAAAAAAAAAAAAAAAAAA	ITGA8	ENSG00000077943.8	transcript	ENST00000378076.4	protein_coding	26/29			chr10	TogoVar
ITGA8_chr10_15508954_15724922	15565573	A A	ATTTTTTT others(15): Show ATTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19054.hp2 NA19054.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0007 a0003c0003t0007	a0003c0003t0007g0007 a0003c0003t0007g0007	1	220	0.0046	22	c.263 others(41): Show c.2637+6616_2637+6637dupAAAAAAAAAAAAAAAAAAAAAA	ITGA8	ENSG00000077943.8	transcript	ENST00000378076.4	protein_coding	25/29			chr10	TogoVar
ITGA8_chr10_15508954_15724922	15694678	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01993.hp1 HG02809.hp1 HG02818.hp1 others(9): Show HG01993.hp1 HG02809.hp1 HG02818.hp1 HG02886.hp2 HG02922.hp1 HG02965.hp2 HG03041.hp2 HG03098.hp1 NA18957.hp2 NA18966.hp2 NA19087.hp2 NA21309.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0018	a0001c0001 a0001c0007 a0001c0014 others(3): Show a0001c0001 a0001c0007 a0001c0014 a0003c0003 a0004c0025 a0018c0027	a0001c0001t0001 a0001c0001t0006 a0001c0001t0011 others(7): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0011 a0001c0001t0034 a0001c0007t0002 a0001c0014t0003 a0003c0003t0006 a0003c0003t0007 a0004c0025t0002 a0018c0027t0044	a0001c0001t0001g0056 a0001c0001t0001g0102 a0001c0001t0001g0152 others(9): Show a0001c0001t0001g0056 a0001c0001t0001g0102 a0001c0001t0001g0152 a0001c0001t0006g0029 a0001c0001t0011g0119 a0001c0001t0034g0160 a0001c0007t0002g0157 a0001c0014t0003g0158 a0003c0003t0006g0013 a0003c0003t0007g0012 a0004c0025t0002g0106 a0018c0027t0044g0219	12	220	0.0546	22	c.344 others(39): Show c.344-6662_344-6641dupATATATATATATATATATATAT	ITGA8	ENSG00000077943.8	transcript	ENST00000378076.4	protein_coding	2/29			chr10	TogoVar
ITGA9_chr3_37447141_37828507	37512119	T T	TTCTTTTC others(15): Show TTCTTTTCTTTTCTTTTCTTTTC	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0007 a0002c0002t0007	a0002c0002t0007g0116 a0002c0002t0007g0116	1	168	0.0060	22	c.898 others(39): Show c.898-1644_898-1643insTCTTTTCTTTTCTTTTCTTTTC	ITGA9	ENSG00000144668.12	transcript	ENST00000264741.10	protein_coding	8/27			chr3	TogoVar
ITGA9_chr3_37447141_37828507	37518093	C C	CGTGTGTG others(15): Show CGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG02486.hp1 NA18960.hp2 others(1): Show HG01169.hp2 HG02486.hp1 NA18960.hp2 NA18972.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0002c0002 a0001c0001 a0001c0005 a0002c0002	a0001c0001t0004 a0001c0001t0021 a0001c0005t0001 others(1): Show a0001c0001t0004 a0001c0001t0021 a0001c0005t0001 a0002c0002t0010	a0001c0001t0004g0026 a0001c0001t0021g0037 a0001c0005t0001g0150 others(1): Show a0001c0001t0004g0026 a0001c0001t0021g0037 a0001c0005t0001g0150 a0002c0002t0010g0065	4	168	0.0238	22	c.114 others(39): Show c.1141+491_1141+512dupGTGTGTGTGTGTGTGTGTGTGT	ITGA9	ENSG00000144668.12	transcript	ENST00000264741.10	protein_coding	10/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
ITGA9_chr3_37447141_37828507	37818191	T T	TAAAAAAA others(15): Show TAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0134 a0001c0001t0004g0134	1	168	0.0060	22	c.301 others(39): Show c.3010-695_3010-674dupAAAAAAAAAAAAAAAAAAAAAA	ITGA9	ENSG00000144668.12	transcript	ENST00000264741.10	protein_coding	27/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
ITGAE_chr17_3709628_3806188	3711370	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01361.hp1 HG02083.hp1 HG02698.hp2 others(6): Show HG01361.hp1 HG02083.hp1 HG02698.hp2 HG03942.hp2 NA18950.hp2 NA18952.hp1 NA19006.hp2 NA19009.hp2 NA19067.hp1	a0002 a0005 a0021 others(2): Show a0002 a0005 a0021 a0028 a0029	a0002c0002 a0002c0029 a0005c0005 others(3): Show a0002c0002 a0002c0029 a0005c0005 a0021c0036 a0028c0033 a0029c0049	a0002c0002t0001 a0002c0029t0001 a0005c0005t0001 others(3): Show a0002c0002t0001 a0002c0029t0001 a0005c0005t0001 a0021c0036t0001 a0028c0033t0001 a0029c0049t0001	a0002c0002t0001g0097 a0002c0002t0001g0099 a0002c0002t0001g0120 others(6): Show a0002c0002t0001g0097 a0002c0002t0001g0099 a0002c0002t0001g0120 a0002c0002t0001g0302 a0002c0029t0001g0292 a0005c0005t0001g0148 a0021c0036t0001g0078 a0028c0033t0001g0195 a0029c0049t0001g0005	9	302	0.0298	22	c.34 others(33): Show c.3476_*3477insAAAAAAAAAAAAAAAAAAAAAA	ITGAE	ENSG00000083457.12	transcript	ENST00000263087.9	protein_coding		3257		chr17	TogoVar
ITGAE_chr17_3709628_3806188	3796161	G G	GCGCGCAT others(15): Show GCGCGCATCCGTGTGTGTGTGTT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0022 a0022	a0022c0053 a0022c0053	a0022c0053t0001 a0022c0053t0001	a0022c0053t0001g0036 a0022c0053t0001g0036	1	302	0.0033	22	c.34+ others(37): Show c.34+4949_34+4950insAACACACACACACGGATGCGCG	ITGAE	ENSG00000083457.12	transcript	ENST00000263087.9	protein_coding	1/30			chr17	TogoVar
ITGAE_chr17_3709628_3806188	3796161	G G	GTGCGCAT others(15): Show GTGCGCATCCGTGTGTGTGTGTT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03195.hp2 HG03486.hp1 others(2): Show HG03041.hp2 HG03195.hp2 HG03486.hp1 NA18522.hp1 NA19030.hp1	a0001 a0004 a0007 others(1): Show a0001 a0004 a0007 a0008	a0001c0001 a0004c0004 a0004c0052 others(2): Show a0001c0001 a0004c0004 a0004c0052 a0007c0024 a0008c0009	a0001c0001t0001 a0004c0004t0001 a0004c0052t0001 others(2): Show a0001c0001t0001 a0004c0004t0001 a0004c0052t0001 a0007c0024t0001 a0008c0009t0001	a0001c0001t0001g0025 a0004c0004t0001g0015 a0004c0052t0001g0053 others(2): Show a0001c0001t0001g0025 a0004c0004t0001g0015 a0004c0052t0001g0053 a0007c0024t0001g0282 a0008c0009t0001g0024	5	302	0.0166	22	c.34+ others(37): Show c.34+4949_34+4950insAACACACACACACGGATGCGCA	ITGAE	ENSG00000083457.12	transcript	ENST00000263087.9	protein_coding	1/30			chr17	TogoVar
ITGAE_chr17_3709628_3806188	3796170	C C	CGTGTGTG others(15): Show CGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01069.hp1 HG01106.hp1 others(10): Show HG00735.hp1 HG01069.hp1 HG01106.hp1 HG01257.hp2 HG01258.hp2 HG01943.hp1 HG02080.hp1 HG02148.hp2 HG02300.hp2 NA18944.hp2 NA18995.hp1 NA19007.hp2 NA21309.hp1	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0004 a0005 a0006 a0009 a0010	a0001c0001 a0002c0002 a0003c0003 others(5): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0006c0007 a0009c0017 a0010c0010	a0001c0001t0001 a0002c0002t0001 a0003c0003t0001 others(5): Show a0001c0001t0001 a0002c0002t0001 a0003c0003t0001 a0004c0004t0001 a0005c0005t0001 a0006c0007t0001 a0009c0017t0001 a0010c0010t0001	a0001c0001t0001g0079 a0001c0001t0001g0231 a0001c0001t0001g0238 others(10): Show a0001c0001t0001g0079 a0001c0001t0001g0231 a0001c0001t0001g0238 a0001c0001t0001g0273 a0001c0001t0001g0278 a0002c0002t0001g0004 a0003c0003t0001g0219 a0004c0004t0001g0279 a0005c0005t0001g0274 a0006c0007t0001g0080 a0006c0007t0001g0143 a0009c0017t0001g0217 a0010c0010t0001g0218	13	302	0.0431	22	c.34+ others(37): Show c.34+4919_34+4940dupACACACACACACACACACACAC	ITGAE	ENSG00000083457.12	transcript	ENST00000263087.9	protein_coding	1/30			chr17	TogoVar
ITGAM_chr16_31254975_31337877	31270699	G G	GTGTGTGT others(15): Show GTGTGTGTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02965.hp1 HG02717.hp1 HG02965.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0004 a0001c0007t0004	a0001c0007t0004g0143 a0001c0007t0004g0148 a0001c0007t0004g0143 a0001c0007t0004g0148	2	244	0.0082	22	c.428 others(37): Show c.428-254_428-253insGTGTGTATATATATATATATAT	ITGAM	ENSG00000169896.18	transcript	ENST00000544665.9	protein_coding	5/29		INFO_REALIGN_3_PRIME	chr16	TogoVar
ITGAV_chr2_186585056_186685901	186668185	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0239 a0001c0001t0003g0239	1	308	0.0033	22	c.243 others(39): Show c.2433+420_2433+441dupATATATATATATATATATATAT	ITGAV	ENSG00000138448.13	transcript	ENST00000261023.8	protein_coding	24/29		INFO_REALIGN_3_PRIME	chr2	TogoVar
ITGAV_chr2_186585056_186685901	186668216	A A	ATATATAT others(15): Show ATATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02004.hp2 HG01255.hp1 HG02004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0212 a0001c0001t0001g0216 a0001c0001t0001g0212 a0001c0001t0001g0216	2	308	0.0065	22	c.243 others(39): Show c.2433+441_2433+442insATATATATATATATATATTTTT	ITGAV	ENSG00000138448.13	transcript	ENST00000261023.8	protein_coding	24/29		INFO_REALIGN_3_PRIME	chr2	TogoVar
ITGAV_chr2_186585056_186685901	186668216	A A	ATATATAT others(15): Show ATATATATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp2 NA18952.hp2 HG00408.hp2 NA18952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0184 a0001c0001t0001g0192 a0001c0001t0001g0184 a0001c0001t0001g0192	2	308	0.0065	22	c.243 others(39): Show c.2433+441_2433+442insATATATATATATATATTTTTTT	ITGAV	ENSG00000138448.13	transcript	ENST00000261023.8	protein_coding	24/29		INFO_REALIGN_3_PRIME	chr2	TogoVar
ITGAX_chr16_31350176_31387999	31382228	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTCTTTTCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0022 a0002c0002t0022	a0002c0002t0022g0103 a0002c0002t0022g0103	1	350	0.0029	22	c.33 others(31): Show c.335_*356dupTTCTTTTCTTTTTTTTTTTTTT	ITGAX	ENSG00000140678.17	transcript	ENST00000268296.9	protein_coding	30/30	357	INFO_REALIGN_3_PRIME	chr16	TogoVar
ITGB1_chr10_32895318_32963230	32947432	C C	CGTGTGTG others(15): Show CGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00423.hp1 HG01167.hp1 others(8): Show HG00408.hp1 HG00423.hp1 HG01167.hp1 HG02109.hp1 HG02698.hp2 HG02717.hp2 HG03041.hp2 HG03942.hp1 HG04115.hp2 HG04228.hp2 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0004 a0001c0002t0002 a0001c0004t0001 a0001c0001t0004 a0001c0002t0002 a0001c0004t0001	a0001c0001t0004g0039 a0001c0001t0004g0040 a0001c0001t0004g0041 others(8): Show a0001c0001t0004g0039 a0001c0001t0004g0040 a0001c0001t0004g0041 a0001c0001t0004g0042 a0001c0002t0002g0366 a0001c0004t0001g0180 a0001c0004t0001g0181 a0001c0004t0001g0182 a0001c0004t0001g0183 a0001c0004t0001g0209 a0001c0004t0001g0367	11	424	0.0259	22	c.-1+ others(39): Show c.-1+10691_-1+10712dupACACACACACACACACACACAC	ITGB1	ENSG00000150093.20	transcript	ENST00000302278.8	protein_coding	1/15			chr10	TogoVar

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