Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LCLAT1_chr2_30442246_30649225	30521489	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03041.hp1 NA19001.hp1 NA19074.hp1 HG03041.hp1 NA19001.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0092 a0001c0001t0005g0093 a0001c0001t0005g0106 a0001c0001t0005g0092 a0001c0001t0005g0093 a0001c0001t0005g0106	3	366	0.0082	22	c.-4- others(37): Show c.-4-4096_-4-4095insTTTTTTTTTTTTTTTTTTTTTT	LCLAT1	ENSG00000172954.14	transcript	ENST00000379509.8	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr2	TogoVar
LCMT1_chr16_25106742_25183228	25135284	A A	AAAATATA others(15): Show AAAATATATATATACATATATAT	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	348	0.0029	22	c.327 others(39): Show c.327+2762_327+2763insAATATATATATACATATATATA	LCMT1	ENSG00000205629.12	transcript	ENST00000399069.8	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr16	TogoVar
LCMT2_chr15_43318649_43335573	43334633	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00558.hp1 HG00642.hp2 HG01106.hp1 others(31): Show HG00558.hp1 HG00642.hp2 HG01106.hp1 HG01243.hp2 HG01346.hp2 HG01361.hp2 HG01433.hp2 HG01516.hp2 HG01891.hp1 HG01981.hp2 HG01993.hp1 HG02015.hp2 HG02165.hp1 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG03239.hp1 HG03669.hp1 HG03688.hp1 HG04199.hp2 HG04228.hp1 NA18972.hp2 NA18978.hp1 NA18987.hp1 NA19001.hp1 NA19002.hp2 NA19012.hp1 NA19055.hp1 NA19055.hp2 NA19068.hp1 NA19072.hp2 NA19077.hp1 NA19084.hp1 NA21309.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0004c0012	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(13): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0011 a0001c0001t0014 a0001c0001t0019 a0001c0001t0024 a0001c0001t0025 a0001c0001t0035 a0001c0001t0040 a0001c0001t0041 a0001c0001t0059 a0001c0001t0060 a0001c0002t0005 a0001c0004t0002 a0004c0012t0002	a0001c0001t0002g0000 a0001c0001t0003g0000 a0001c0001t0004g0000 others(13): Show a0001c0001t0002g0000 a0001c0001t0003g0000 a0001c0001t0004g0000 a0001c0001t0011g0000 a0001c0001t0014g0000 a0001c0001t0019g0000 a0001c0001t0024g0000 a0001c0001t0025g0000 a0001c0001t0035g0000 a0001c0001t0040g0000 a0001c0001t0041g0000 a0001c0001t0059g0000 a0001c0001t0060g0000 a0001c0002t0005g0000 a0001c0004t0002g0000 a0004c0012t0002g0000	34	410	0.0829	22	c.-41 others(33): Show c.-4166_-4145dupTATATATATATATATATATATA	LCMT2	ENSG00000168806.8	transcript	ENST00000305641.7	protein_coding		4061		chr15	TogoVar
LCOR_chr10_96827298_97000956	96989695	A A	ATATATAT others(15): Show ATATATATATATATATATTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0007 a0007	a0007c0013 a0007c0013	a0007c0013t0141 a0007c0013t0141	a0007c0013t0141g0175 a0007c0013t0141g0175	1	288	0.0035	22	c.45 others(33): Show c.4562_*4563insATATATATATATATATTTTTTT	LCOR	ENSG00000196233.14	transcript	ENST00000421806.4	protein_coding	8/8	4563	INFO_REALIGN_3_PRIME	chr10	TogoVar
LCP2_chr5_170241233_170302777	170289647	T T	TTCTTTCT others(15): Show TTCTTTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0300 a0001c0001t0001g0300	1	384	0.0026	22	c.142 others(39): Show c.142-1632_142-1631insGAGAGAGAGAGAGAGAGAAAGA	LCP2	ENSG00000043462.13	transcript	ENST00000046794.10	protein_coding	2/20			chr5	TogoVar
LCTL_chr15_66542532_66570998	66544724	T T	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04184.hp2 HG04199.hp1 HG04184.hp2 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0193 a0001c0001t0006g0245 a0001c0001t0001g0193 a0001c0001t0006g0245	2	434	0.0046	22	c.37 others(33): Show c.3744_*3765dupCACACACACACACACACACACA	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2807		chr15	TogoVar
LCTL_chr15_66542532_66570998	66544724	T T	TTTTTTTT others(15): Show TTTTTTTTTTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0212 a0002c0002t0001g0212	1	434	0.0023	22	c.37 others(33): Show c.3765_*3766insCACACACACACACAAAAAAAAA	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2807		chr15	TogoVar
LCTL_chr15_66542532_66570998	66544724	T T	TTTTTTTT others(15): Show TTTTTTTTTTTTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp1 HG01257.hp2 HG01346.hp2 others(12): Show HG00733.hp1 HG01257.hp2 HG01346.hp2 HG01928.hp1 HG01928.hp2 HG01952.hp1 HG01993.hp1 NA18947.hp2 NA18949.hp1 NA18953.hp1 NA18955.hp1 NA18960.hp1 NA19068.hp1 NA19085.hp1 NA19088.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0004 a0001c0001 a0002c0002 a0003c0004	a0001c0001t0001 a0002c0002t0001 a0003c0004t0001 a0001c0001t0001 a0002c0002t0001 a0003c0004t0001	a0001c0001t0001g0082 a0002c0002t0001g0008 a0002c0002t0001g0092 others(5): Show a0001c0001t0001g0082 a0002c0002t0001g0008 a0002c0002t0001g0092 a0002c0002t0001g0206 a0002c0002t0001g0208 a0002c0002t0001g0211 a0002c0002t0001g0217 a0003c0004t0001g0018	15	434	0.0346	22	c.37 others(33): Show c.3765_*3766insCACACACACACAAAAAAAAAAA	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2807		chr15	TogoVar
LCTL_chr15_66542532_66570998	66544724	T T	TTTTTTTT others(15): Show TTTTTTTTTTTTTTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01943.hp2 NA18971.hp1 NA18975.hp1 others(2): Show HG01943.hp2 NA18971.hp1 NA18975.hp1 NA19058.hp2 NA19065.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0008 a0002c0002t0001g0200 a0002c0002t0001g0204 others(2): Show a0002c0002t0001g0008 a0002c0002t0001g0200 a0002c0002t0001g0204 a0002c0002t0001g0205 a0002c0002t0001g0213	5	434	0.0115	22	c.37 others(33): Show c.3765_*3766insCACACACACAAAAAAAAAAAAA	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2807		chr15	TogoVar
LCT_chr2_135782850_135842184	135835976	G G	GTATATAA others(15): Show GTATATAAATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0001 a0003c0007t0001	a0003c0007t0001g0104 a0003c0007t0001g0104	1	366	0.0027	22	c.640 others(37): Show c.640+553_640+554insTATATATATATATATTTATATA	LCT	ENSG00000115850.10	transcript	ENST00000264162.7	protein_coding	1/16			chr2	TogoVar
LDAF1_chr16_21153674_21185616	21168912	T T	TTATTTAT others(15): Show TTATTTATATTTATATATTTAAA	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0175	1	390	0.0026	22	c.97- others(37): Show c.97-1510_97-1489dupTATTTAAATATTTATATTTATA	LDAF1	ENSG00000011638.11	transcript	ENST00000233047.9	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr16	TogoVar
LDAH_chr2_20679031_20828101	20716720	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG02071.hp2 HG02165.hp2 others(2): Show HG01358.hp2 HG02071.hp2 HG02165.hp2 HG02965.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005	a0001c0001t0002g0112 a0001c0001t0003g0104 a0001c0001t0003g0200 others(2): Show a0001c0001t0002g0112 a0001c0001t0003g0104 a0001c0001t0003g0200 a0001c0001t0003g0218 a0001c0001t0005g0059	5	258	0.0194	22	c.704 others(41): Show c.704-15069_704-15068insTATATATATATATATATATATA	LDAH	ENSG00000118961.15	transcript	ENST00000237822.8	protein_coding	5/6			chr2	TogoVar
LDB2_chr4_16496541_16903645	16763439	T T	TACACACA others(15): Show TACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0053	1	162	0.0062	22	c.133 others(39): Show c.133-4201_133-4180dupGTGTGTGTGTGTGTGTGTGTGT	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	1/7			chr4	TogoVar
LDB2_chr4_16496541_16903645	16812582	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	1	162	0.0062	22	c.133 others(41): Show c.133-53344_133-53323dupTATATATATATATATATATATA	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	1/7			chr4	TogoVar
LDHAL6A_chr11_18450856_18484601	18467898	T T	TATATATA others(15): Show TATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG03486.hp1 HG02717.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0043 a0001c0001t0040 a0001c0001t0043	a0001c0001t0040g0285 a0001c0001t0043g0310 a0001c0001t0040g0285 a0001c0001t0043g0310	2	420	0.0048	22	c.418 others(39): Show c.418+2103_418+2104insCACACACATATATATATATATA	LDHAL6A	ENSG00000166800.11	transcript	ENST00000280706.3	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHA_chr11_18389563_18413425	18401955	C C	CTCTCTTT others(15): Show CTCTCTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0158 a0001c0001t0001g0158	1	390	0.0026	22	c.419 others(37): Show c.419-884_419-883insCTCTTTTTTTTTTTTTTTTTTT	LDHA	ENSG00000134333.15	transcript	ENST00000422447.8	protein_coding	4/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHC_chr11_18407318_18457063	18444604	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18964.hp2 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0072 a0001c0001t0001g0072	1	348	0.0029	22	c.711 others(39): Show c.711-1582_711-1561dupATATATATATATATATATATAT	LDHC	ENSG00000166796.12	transcript	ENST00000541669.6	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDLRAD3_chr11_35939062_36237136	36075303	G G	GCCTTTTT others(15): Show GCCTTTTTCCTTGGCCTTTTTAT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00558.hp1 HG00597.hp1 others(143): Show HG00099.hp1 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG01070.hp1 HG01071.hp1 HG01081.hp1 HG01109.hp2 HG01167.hp1 HG01192.hp1 HG01192.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp2 HG01934.hp1 HG01934.hp2 HG01952.hp1 HG01952.hp2 HG02004.hp1 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02109.hp1 HG02129.hp1 HG02129.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02559.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG03017.hp1 HG03017.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp2 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp2 NA18747.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18945.hp2 NA18951.hp2 NA18952.hp1 NA18957.hp1 NA18957.hp2 NA18965.hp1 NA18965.hp2 NA18970.hp1 NA18970.hp2 NA18975.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp2 NA18999.hp1 NA18999.hp2 NA19002.hp1 NA19002.hp2 NA19012.hp1 NA19056.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp2 NA19079.hp1 NA19079.hp2 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19088.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0005 a0006 a0007	a0001c0001 a0001c0002 a0002c0003 others(5): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004 a0003c0005 a0005c0010 a0006c0007 a0007c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(29): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0016 a0001c0001t0019 a0001c0001t0021 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0002t0001 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0008 a0001c0002t0009 a0002c0003t0001 a0002c0003t0002 a0002c0003t0004 a0002c0004t0004 a0003c0005t0004 a0005c0010t0001 a0006c0007t0001 a0007c0008t0001	a0001c0001t0001g0005 a0001c0001t0001g0020 a0001c0001t0001g0022 others(143): Show a0001c0001t0001g0005 a0001c0001t0001g0020 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0027 a0001c0001t0001g0031 a0001c0001t0001g0035 a0001c0001t0001g0040 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0065 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0079 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0100 a0001c0001t0001g0103 a0001c0001t0001g0105 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0123 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0154 a0001c0001t0001g0161 a0001c0001t0001g0164 a0001c0001t0001g0166 a0001c0001t0001g0169 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0207 a0001c0001t0001g0210 a0001c0001t0001g0214 a0001c0001t0001g0222 a0001c0001t0002g0033 a0001c0001t0002g0062 a0001c0001t0002g0078 a0001c0001t0002g0088 a0001c0001t0002g0104 a0001c0001t0002g0122 a0001c0001t0002g0124 a0001c0001t0002g0131 a0001c0001t0002g0144 a0001c0001t0002g0171 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0195 a0001c0001t0002g0213 a0001c0001t0003g0023 a0001c0001t0003g0025 a0001c0001t0003g0029 a0001c0001t0003g0052 a0001c0001t0003g0063 a0001c0001t0003g0066 a0001c0001t0003g0071 a0001c0001t0003g0075 a0001c0001t0003g0076 a0001c0001t0003g0082 a0001c0001t0003g0109 a0001c0001t0003g0111 a0001c0001t0003g0153 a0001c0001t0003g0177 a0001c0001t0003g0190 a0001c0001t0003g0194 a0001c0001t0003g0224 a0001c0001t0004g0016 a0001c0001t0004g0162 a0001c0001t0005g0044 a0001c0001t0005g0092 a0001c0001t0005g0094 a0001c0001t0005g0181 a0001c0001t0005g0200 a0001c0001t0006g0012 a0001c0001t0006g0014 a0001c0001t0006g0203 a0001c0001t0007g0045 a0001c0001t0007g0053 a0001c0001t0007g0218 a0001c0001t0008g0095 a0001c0001t0008g0143 a0001c0001t0008g0199 a0001c0001t0009g0007 a0001c0001t0009g0042 a0001c0001t0010g0064 a0001c0001t0010g0106 a0001c0001t0010g0108 a0001c0001t0010g0178 a0001c0001t0011g0036 a0001c0001t0011g0211 a0001c0001t0016g0034 a0001c0001t0019g0098 a0001c0001t0021g0170 a0001c0001t0023g0057 a0001c0001t0024g0141 a0001c0001t0025g0201 a0001c0002t0001g0021 a0001c0002t0001g0116 a0001c0002t0001g0157 a0001c0002t0001g0196 a0001c0002t0003g0077 a0001c0002t0003g0133 a0001c0002t0005g0070 a0001c0002t0005g0156 a0001c0002t0006g0180 a0001c0002t0007g0215 a0001c0002t0008g0038 a0001c0002t0008g0039 a0001c0002t0009g0206 a0002c0003t0001g0004 a0002c0003t0001g0228 a0002c0003t0001g0229 a0002c0003t0002g0225 a0002c0003t0004g0234 a0002c0003t0004g0236 a0002c0004t0004g0231 a0003c0005t0004g0093 a0003c0005t0004g0209 a0005c0010t0001g0041 a0006c0007t0001g0223 a0007c0008t0001g0032	146	236	0.6186	22	c.194 others(39): Show c.194-6345_194-6344insTTCCTTGGCCTTTTTATCCTTT	LDLRAD3	ENSG00000179241.13	transcript	ENST00000315571.6	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDLRAD3_chr11_35939062_36237136	36140992	T T	TTCTCTCT others(15): Show TTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0114 a0001c0001t0001g0114	1	236	0.0042	22	c.454 others(41): Show c.454+42554_454+42575dupTCTCTCTCTCTCTCTCTCTCTC	LDLRAD3	ENSG00000179241.13	transcript	ENST00000315571.6	protein_coding	4/5		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDLRAD4_chr18_13213760_13657751	13578827	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG02280.hp1 NA18964.hp1 HG00099.hp2 HG02280.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0065 a0001c0001t0003 a0001c0001t0065	a0001c0001t0003g0137 a0001c0001t0003g0147 a0001c0001t0065g0113 a0001c0001t0003g0137 a0001c0001t0003g0147 a0001c0001t0065g0113	3	178	0.0169	22	c.182 others(41): Show c.182-42283_182-42262dupTTTTTTTTTTTTTTTTTTTTTT	LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr18	TogoVar
LDLRAD4_chr18_13213760_13657751	13610305	T T	TTTTTTTT others(15): Show TTTTTTTTTTTTTTTTTTTTTTC	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0055 a0001c0001t0010g0055	1	178	0.0056	22	c.182 others(41): Show c.182-10812_182-10811insTTTTTTTTTTTTTTTTTTTTTC	LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	4/6			chr18	TogoVar
LEF1_chr4_108042548_108173932	108086829	T T	TACACACA others(15): Show TACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(33): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00544.hp1 HG00609.hp2 HG01069.hp1 HG01070.hp1 HG01071.hp2 HG01192.hp2 HG01515.hp1 HG02083.hp1 HG02135.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02647.hp2 HG02723.hp1 HG02970.hp1 HG03225.hp2 HG04204.hp1 NA18952.hp1 NA18960.hp2 NA18963.hp1 NA18970.hp1 NA18975.hp1 NA18981.hp1 NA19004.hp2 NA19010.hp2 NA19056.hp2 NA19066.hp2 NA19070.hp2 NA19082.hp1 NA19090.hp1 NA20905.hp1 NA20905.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0007 a0004c0009 a0001c0001 a0001c0007 a0004c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0007t0002 a0004c0009t0002	a0001c0001t0001g0187 a0001c0001t0001g0201 a0001c0001t0002g0010 others(33): Show a0001c0001t0001g0187 a0001c0001t0001g0201 a0001c0001t0002g0010 a0001c0001t0002g0014 a0001c0001t0002g0017 a0001c0001t0002g0020 a0001c0001t0002g0024 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0036 a0001c0001t0002g0038 a0001c0001t0002g0039 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0059 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0083 a0001c0001t0002g0084 a0001c0001t0002g0085 a0001c0001t0002g0086 a0001c0001t0002g0093 a0001c0001t0003g0245 a0001c0001t0003g0246 a0001c0001t0004g0011 a0001c0001t0004g0016 a0001c0001t0004g0030 a0001c0001t0004g0031 a0001c0001t0009g0012 a0001c0001t0009g0013 a0001c0001t0009g0015 a0001c0001t0009g0040 a0001c0007t0002g0025 a0004c0009t0002g0096	36	264	0.1364	22	c.547 others(39): Show c.547+2295_547+2296insGTGTGTGTGTGTGTGTGTGTGT	LEF1	ENSG00000138795.10	transcript	ENST00000265165.6	protein_coding	4/11			chr4	TogoVar
LEF1_chr4_108042548_108173932	108115846	T T	TACACACA others(15): Show TACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02004.hp2 HG02895.hp2 others(2): Show HG01255.hp1 HG02004.hp2 HG02895.hp2 HG02897.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0021 a0001c0001t0001 a0001c0001t0003 a0001c0001t0021	a0001c0001t0001g0243 a0001c0001t0003g0241 a0001c0001t0003g0242 others(2): Show a0001c0001t0001g0243 a0001c0001t0003g0241 a0001c0001t0003g0242 a0001c0001t0003g0244 a0001c0001t0021g0098	5	264	0.0189	22	c.415 others(41): Show c.415-26611_415-26590dupGTGTGTGTGTGTGTGTGTGTGT	LEF1	ENSG00000138795.10	transcript	ENST00000265165.6	protein_coding	3/11			chr4	TogoVar
LEF1_chr4_108042548_108173932	108149458	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01243.hp2 HG02895.hp2 others(6): Show HG00642.hp2 HG01243.hp2 HG02895.hp2 HG02897.hp2 HG02965.hp2 HG03098.hp1 HG03471.hp1 HG06807.hp1 NA19076.hp1	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0003c0004 a0005c0005 a0001c0001 a0003c0004 a0005c0005	a0001c0001t0003 a0001c0001t0006 a0001c0001t0022 others(3): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0022 a0001c0001t0026 a0003c0004t0001 a0005c0005t0003	a0001c0001t0003g0238 a0001c0001t0003g0239 a0001c0001t0003g0241 others(6): Show a0001c0001t0003g0238 a0001c0001t0003g0239 a0001c0001t0003g0241 a0001c0001t0003g0242 a0001c0001t0006g0255 a0001c0001t0022g0248 a0001c0001t0026g0264 a0003c0004t0001g0115 a0005c0005t0003g0113	9	264	0.0341	22	c.414 others(41): Show c.414+14109_414+14110insTTTTTTTTTTTTTTTTTTTTTT	LEF1	ENSG00000138795.10	transcript	ENST00000265165.6	protein_coding	3/11			chr4	TogoVar
LEMD3_chr12_65164583_65253355	65212046	A A	ACTCACAG others(15): Show ACTCACAGTTCGGCTGGGGAGGC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0215 a0001c0001t0002g0215	1	398	0.0025	22	c.156 others(41): Show c.1560+1092_1560+1113dupTCGGCTGGGGAGGCCTCACAGT	LEMD3	ENSG00000174106.3	transcript	ENST00000308330.3	protein_coding	2/12		INFO_REALIGN_3_PRIME	chr12	TogoVar
LEO1_chr15_51933025_51976778	51934711	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01928.hp1 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	388	0.0026	22	c.34 others(33): Show c.3444_*3445insTTTTTTTTTTTTTTTTTTTTTT	LEO1	ENSG00000166477.13	transcript	ENST00000299601.10	protein_coding		3313		chr15	TogoVar
LEPROT_chr1_65415668_65441007	65417064	C C	CTATATAT others(15): Show CTATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0039 a0001c0001t0004g0039	1	402	0.0025	22	c.-36 others(33): Show c.-3661_-3660insTATATATATATATATATATATA	LEPROT	ENSG00000213625.9	transcript	ENST00000371065.9	protein_coding		3603		chr1	TogoVar
LEPROT_chr1_65415668_65441007	65417065	C C	CATATATA others(15): Show CATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp1 HG01433.hp2 HG02451.hp2 others(4): Show HG01168.hp1 HG01433.hp2 HG02451.hp2 HG02486.hp2 HG02622.hp2 HG03195.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0035 a0001c0001t0037 a0001c0001t0004 a0001c0001t0035 a0001c0001t0037	a0001c0001t0004g0019 a0001c0001t0004g0034 a0001c0001t0004g0039 others(4): Show a0001c0001t0004g0019 a0001c0001t0004g0034 a0001c0001t0004g0039 a0001c0001t0004g0062 a0001c0001t0004g0073 a0001c0001t0035g0005 a0001c0001t0037g0003	7	402	0.0174	22	c.-36 others(33): Show c.-3660_-3659insATATATATATATATATATATAT	LEPROT	ENSG00000213625.9	transcript	ENST00000371065.9	protein_coding		3602		chr1	TogoVar
LEPR_chr1_65415668_65646559	65417065	C C	CATATATA others(15): Show CATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp1 HG01433.hp2 HG02451.hp2 others(3): Show HG01168.hp1 HG01433.hp2 HG02451.hp2 HG02622.hp2 HG03195.hp1 HG03453.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0002c0025 a0003c0006 others(1): Show a0001c0001 a0002c0025 a0003c0006 a0005c0007	a0001c0001t0003 a0001c0001t0011 a0002c0025t0025 others(2): Show a0001c0001t0003 a0001c0001t0011 a0002c0025t0025 a0003c0006t0021 a0005c0007t0003	a0001c0001t0003g0061 a0001c0001t0003g0074 a0001c0001t0011g0013 others(3): Show a0001c0001t0003g0061 a0001c0001t0003g0074 a0001c0001t0011g0013 a0002c0025t0025g0015 a0003c0006t0021g0079 a0005c0007t0003g0027	6	216	0.0278	22	c.-37 others(33): Show c.-3772_-3771insATATATATATATATATATATAT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding		3602		chr1	TogoVar
LEPR_chr1_65415668_65646559	65472411	A A	AACACACA others(15): Show AACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02922.hp2 HG02809.hp2 HG02922.hp2	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0003 a0005c0007t0003	a0005c0007t0003g0092 a0005c0007t0003g0101 a0005c0007t0003g0092 a0005c0007t0003g0101	2	216	0.0093	22	c.-21 others(41): Show c.-21+47046_-21+47067dupACACACACACACACACACACAC	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488114	T T	TTTCCCTC others(15): Show TTTCCCTCCCTCCCTCTCCTTCC	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0151 a0002c0002t0005g0151	1	216	0.0046	22	c.-21 others(41): Show c.-21+62739_-21+62740insCCTCCCTCCCTCTCCTTCCTTC	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488214	C C	CTTTCTTT others(15): Show CTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0007 a0003c0005t0007	a0003c0005t0007g0194 a0003c0005t0007g0194	1	216	0.0046	22	c.-21 others(41): Show c.-21+62837_-21+62838insTTCTTTCTTTCTTTCTTTCTTT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488222	C C	CTTTCTTT others(15): Show CTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0014 a0004c0003t0014	a0004c0003t0014g0086 a0004c0003t0014g0086	1	216	0.0046	22	c.-21 others(41): Show c.-21+62845_-21+62846insTTCTTTCTTTCTTTCTTTCTTT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488226	C C	CTTTCTTT others(15): Show CTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01496.hp1 HG00642.hp1 HG01496.hp1	a0002 a0004 a0002 a0004	a0002c0002 a0004c0003 a0002c0002 a0004c0003	a0002c0002t0001 a0004c0003t0004 a0002c0002t0001 a0004c0003t0004	a0002c0002t0001g0070 a0004c0003t0004g0179 a0002c0002t0001g0070 a0004c0003t0004g0179	2	216	0.0093	22	c.-21 others(41): Show c.-21+62849_-21+62850insTTCTTTCTTTCTTTCTTTCTTT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65518873	T T	TTCTTTCT others(15): Show TTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	NA19081.hp2 NA19081.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0032 a0003c0005t0032	a0003c0005t0032g0007 a0003c0005t0032g0007	1	216	0.0046	22	c.-20 others(41): Show c.-20-46672_-20-46671insCTTTCTTTCTTTCTTTCTTTCT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LETM1_chr4_1806479_1861156	1860697	A A	ATATATAT others(15): Show ATATATATATATATATATTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01975.hp1 HG03540.hp2 HG01975.hp1 HG03540.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0004 a0005c0005t0018 a0005c0005t0004 a0005c0005t0018	a0005c0005t0004g0003 a0005c0005t0018g0019 a0005c0005t0004g0003 a0005c0005t0018g0019	2	200	0.0100	22	c.-47 others(33): Show c.-4748_-4747insAAAAAATATATATATATATATA	LETM1	ENSG00000168924.15	transcript	ENST00000302787.3	protein_coding		4542		chr4	TogoVar
LFNG_chr7_2514774_2533429	2527618	G G	GGGGTACC others(15): Show GGGGTACCTGTGCCCTGAAGTCC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0001 a0001c0001t0016g0001	1	414	0.0024	22	c.40 others(31): Show c.407_*428dupGGGTACCTGTGCCCTGAAGTCC	LFNG	ENSG00000106003.14	transcript	ENST00000222725.10	protein_coding	8/8	429	INFO_REALIGN_3_PRIME	chr7	TogoVar
LGALS16_chr19_39650913_39665647	39663851	T T	TATATATA others(15): Show TATATATATGTATGTATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03195.hp2 HG03225.hp2 HG03195.hp2 HG03225.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0008 a0002c0002t0001g0008	2	442	0.0045	22	c.33 others(33): Show c.3331_*3332insATATATATGTATGTATATATAC	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3205		chr19	TogoVar
LGALS8_chr1_236518982_236557981	236533917	T T	TAGCTCCC others(15): Show TAGCTCCCTCTGACCCTGGATGC	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00280.hp2 others(171): Show HG00099.hp1 HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00621.hp2 HG00639.hp1 HG00642.hp2 HG00673.hp1 HG00735.hp1 HG00738.hp2 HG00741.hp1 HG01070.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp2 HG01515.hp2 HG01516.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01978.hp1 HG01981.hp1 HG02004.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp1 HG02132.hp2 HG02145.hp2 HG02155.hp1 HG02165.hp1 HG02257.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp2 HG02622.hp2 HG02683.hp1 HG02698.hp2 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG03017.hp1 HG03098.hp2 HG03130.hp1 HG03195.hp2 HG03225.hp1 HG03490.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03831.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp1 HG04199.hp2 HG04228.hp1 NA18747.hp2 NA18944.hp1 NA18946.hp2 NA18947.hp1 NA18948.hp2 NA18949.hp1 NA18950.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18954.hp2 NA18955.hp2 NA18956.hp2 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18971.hp2 NA18972.hp1 NA18974.hp1 NA18977.hp1 NA18979.hp2 NA18980.hp1 NA18983.hp1 NA18988.hp2 NA18989.hp2 NA18990.hp2 NA18991.hp2 NA18994.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp2 NA19001.hp1 NA19002.hp1 NA19003.hp2 NA19006.hp1 NA19007.hp2 NA19009.hp2 NA19010.hp2 NA19011.hp2 NA19043.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19060.hp2 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19066.hp2 NA19067.hp1 NA19068.hp2 NA19070.hp2 NA19072.hp2 NA19075.hp1 NA19077.hp2 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0004 a0001c0007 others(4): Show a0001c0001 a0001c0004 a0001c0007 a0001c0008 a0001c0009 a0001c0011 a0003c0016	a0001c0001t0001 a0001c0001t0007 a0001c0001t0010 others(17): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0010 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0027 a0001c0001t0028 a0001c0001t0029 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0004t0009 a0001c0004t0012 a0001c0007t0014 a0001c0008t0001 a0001c0009t0001 a0001c0011t0010 a0003c0016t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0007 others(126): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0015 a0001c0001t0001g0027 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0055 a0001c0001t0001g0060 a0001c0001t0001g0101 a0001c0001t0001g0106 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0195 a0001c0001t0001g0204 a0001c0001t0001g0223 a0001c0001t0001g0248 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0276 a0001c0001t0007g0043 a0001c0001t0007g0044 a0001c0001t0007g0045 a0001c0001t0007g0194 a0001c0001t0007g0196 a0001c0001t0007g0197 a0001c0001t0007g0198 a0001c0001t0007g0199 a0001c0001t0007g0200 a0001c0001t0007g0201 a0001c0001t0007g0202 a0001c0001t0010g0004 a0001c0001t0010g0005 a0001c0001t0010g0175 a0001c0001t0016g0040 a0001c0001t0016g0139 a0001c0001t0017g0043 a0001c0001t0017g0044 a0001c0001t0018g0042 a0001c0001t0019g0004 a0001c0001t0027g0007 a0001c0001t0028g0041 a0001c0001t0029g0281 a0001c0001t0030g0251 a0001c0001t0031g0156 a0001c0001t0032g0135 a0001c0004t0009g0016 a0001c0004t0009g0061 a0001c0004t0009g0062 a0001c0004t0009g0063 a0001c0004t0009g0064 a0001c0004t0012g0203 a0001c0004t0012g0205 a0001c0004t0012g0206 a0001c0007t0014g0029 a0001c0007t0014g0070 a0001c0008t0001g0027 a0001c0008t0001g0055 a0001c0008t0001g0095 a0001c0009t0001g0134 a0001c0011t0010g0186 a0003c0016t0001g0118	174	450	0.3867	22	c.46- others(37): Show c.46-3563_46-3542dupGGATGCAGCTCCCTCTGACCCT	LGALS8	ENSG00000116977.19	transcript	ENST00000366584.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
LGALS8_chr1_236518982_236557981	236536981	G G	GCAGCTAT others(15): Show GCAGCTATTGCAGATATCCTGGC	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG02055.hp2 HG01515.hp1 HG02055.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0024 a0003c0003t0044 a0003c0003t0024 a0003c0003t0044	a0003c0003t0024g0122 a0003c0003t0044g0279 a0003c0003t0024g0122 a0003c0003t0044g0279	2	450	0.0044	22	c.46- others(35): Show c.46-513_46-492dupGCTATTGCAGATATCCTGGCCA	LGALS8	ENSG00000116977.19	transcript	ENST00000366584.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
LGALS9B_chr17_20444395_20472539	20455425	T T	TGAGGAGA others(15): Show TGAGGAGAAGCATTAATAGAGCC	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02976.hp2 HG03139.hp2 others(1): Show HG02055.hp2 HG02976.hp2 HG03139.hp2 HG03195.hp2	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0001 a0002c0011t0001	a0002c0011t0001g0033 a0002c0011t0001g0034 a0002c0011t0001g0033 a0002c0011t0001g0034	4	433	0.0092	22	c.445 others(35): Show c.445-49_445-28dupGGCTCTATTAATGCTTCTCCTC	LGALS9B	ENSG00000170298.16	transcript	ENST00000423676.8	protein_coding	4/10			chr17	TogoVar
LGR4_chr11_27360961_27477790	27474121	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0020 a0001c0002t0020	a0001c0002t0020g0004 a0001c0002t0020g0004	1	244	0.0041	22	c.-18 others(33): Show c.-1820_-1819insTTTTTTTTTTTTTTTTTTTTTT	LGR4	ENSG00000205213.14	transcript	ENST00000379214.9	protein_coding		1332		chr11	TogoVar
LGR5_chr12_71434798_71591310	71448084	A A	AACACACA others(15): Show AACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0007 a0001c0001t0004g0007	1	200	0.0050	22	c.212 others(39): Show c.212+7800_212+7821dupCACACACACACACACACACACA	LGR5	ENSG00000139292.13	transcript	ENST00000266674.10	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr12	TogoVar
LGR5_chr12_71434798_71591310	71548301	C C	CTGTGTGT others(15): Show CTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG01346.hp1 HG00280.hp2 HG01346.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0128 a0001c0002t0001g0016 a0001c0001t0001g0128 a0001c0002t0001g0016	2	200	0.0100	22	c.429 others(39): Show c.429-4769_429-4748dupTGTGTGTGTGTGTGTGTGTGTG	LGR5	ENSG00000139292.13	transcript	ENST00000266674.10	protein_coding	4/17		INFO_REALIGN_3_PRIME	chr12	TogoVar
LGR5_chr12_71434798_71591310	71565422	C C	CTATATAT others(15): Show CTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02970.hp2 HG03139.hp1 HG02486.hp1 HG02970.hp2 HG03139.hp1	a0003 a0013 a0003 a0013	a0003c0005 a0013c0017 a0003c0005 a0013c0017	a0003c0005t0011 a0003c0005t0019 a0013c0017t0018 a0003c0005t0011 a0003c0005t0019 a0013c0017t0018	a0003c0005t0011g0199 a0003c0005t0019g0181 a0013c0017t0018g0004 a0003c0005t0011g0199 a0003c0005t0019g0181 a0013c0017t0018g0004	3	200	0.0150	22	c.858 others(37): Show c.858-981_858-960dupTATATATATATATATATATATA	LGR5	ENSG00000139292.13	transcript	ENST00000266674.10	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr12	TogoVar
LHCGR_chr2_48681774_48760724	48752991	G G	GGGGGGGG others(15): Show GGGGGGGGGTGGGGGGGTGGGGT	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG03017.hp2 HG02523.hp1 HG03017.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0001 a0001c0001t0001 a0004c0004t0001	a0001c0001t0001g0299 a0004c0004t0001g0333 a0001c0001t0001g0299 a0004c0004t0001g0333	2	374	0.0054	22	c.161 others(39): Show c.161+2519_161+2520insACCCCACCCCCCCACCCCCCCC	LHCGR	ENSG00000138039.15	transcript	ENST00000294954.12	protein_coding	1/10			chr2	TogoVar
LHFPL2_chr5_78480230_78653772	78651583	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp2 HG03704.hp2 NA18962.hp2 others(2): Show HG00280.hp2 HG03704.hp2 NA18962.hp2 NA18983.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0002 a0001c0002t0003 a0001c0001t0004 a0001c0002t0002 a0001c0002t0003	a0001c0001t0004g0047 a0001c0002t0002g0021 a0001c0002t0002g0077 others(2): Show a0001c0001t0004g0047 a0001c0002t0002g0021 a0001c0002t0002g0077 a0001c0002t0003g0028 a0001c0002t0003g0030	5	254	0.0197	22	c.-34 others(33): Show c.-3456_-3435dupTTTTTTTTTTTTTTTTTTTTTT	LHFPL2	ENSG00000145685.14	transcript	ENST00000380345.7	protein_coding		2812		chr5	TogoVar
LHFPL3_chr7_104323603_104913561	104666512	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00621.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0013 a0001c0001t0006g0013	1	86	0.0116	22	c.446 others(41): Show c.446-70157_446-70136dupTTTTTTTTTTTTTTTTTTTTTT	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL4_chr3_9493361_9558822	9556116	T T	TCACACAC others(15): Show TCACACACACACACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02004.hp1 HG02071.hp2 NA18970.hp2 others(4): Show HG02004.hp1 HG02071.hp2 NA18970.hp2 NA19009.hp1 NA19010.hp2 NA19060.hp2 NA19078.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0003 a0001c0001t0007	a0001c0001t0003g0019 a0001c0001t0003g0021 a0001c0001t0003g0042 others(4): Show a0001c0001t0003g0019 a0001c0001t0003g0021 a0001c0001t0003g0042 a0001c0001t0003g0055 a0001c0001t0003g0060 a0001c0001t0003g0086 a0001c0001t0007g0038	7	360	0.0194	22	c.-26 others(33): Show c.-2601_-2600insTGTGTGTGTGTGTGTGTGTGTG	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		2295		chr3	TogoVar
LHFPL4_chr3_9493361_9558822	9556778	G G	GAGAGAGA others(15): Show GAGAGAGAGAAAGAAAGAAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0144 a0001c0001t0024g0144	1	360	0.0028	22	c.-32 others(33): Show c.-3263_-3262insTTCTTTCTTTCTTTCTCTCTCT	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		2957		chr3	TogoVar

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