Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRC74A_chr14_76821408_76875304	76853430	G G	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0032 a0002c0002t0003g0032	1	408	0.0025	22	c.957 others(35): Show c.957+31_957+52dupGTGTGTGTGTGTGTGTGTGTGT	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	9/13		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC7_chr1_69562922_70149364	69650539	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG02055.hp1 HG03209.hp2 others(5): Show HG01515.hp2 HG02055.hp1 HG03209.hp2 NA18977.hp2 NA18992.hp2 NA19004.hp1 NA19004.hp2 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0008 a0001c0001 a0001c0002 a0001c0008	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0022 a0001c0001t0042 a0001c0001t0092 a0001c0002t0059 a0001c0008t0024	a0001c0001t0001g0079 a0001c0001t0003g0022 a0001c0001t0006g0081 others(5): Show a0001c0001t0001g0079 a0001c0001t0003g0022 a0001c0001t0006g0081 a0001c0001t0022g0088 a0001c0001t0042g0106 a0001c0001t0092g0101 a0001c0002t0059g0105 a0001c0008t0024g0107	8	108	0.0741	22	c.3-2 others(37): Show c.3-27827_3-27826insAAAAAAAAAAAAAAAAAAAAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAAAGAAA others(15): Show GAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG02970.hp1 HG01515.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0011 a0001c0001t0007 a0001c0001t0011	a0001c0001t0007g0104 a0001c0001t0011g0042 a0001c0001t0007g0104 a0001c0001t0011g0042	2	108	0.0185	22	c.100 others(41): Show c.100+39665_100+39666insAAGAAAGAAAGAAAGAAAGAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	70082781	A A	ATTTTTTT others(15): Show ATTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp2 NA19080.hp2 HG01243.hp2 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0041 a0001c0003t0028 a0001c0001t0041 a0001c0003t0028	a0001c0001t0041g0002 a0001c0003t0028g0014 a0001c0001t0041g0002 a0001c0003t0028g0014	2	108	0.0185	22	c.445 others(41): Show c.4452+6493_4452+6514dupTTTTTTTTTTTTTTTTTTTTTT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8A_chr9_128877133_128923039	128918315	T T	TTTTTTTG others(15): Show TTTTTTTGTTGTTGGTTGGTTGG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0122 a0001c0002t0001g0122	1	344	0.0029	22	c.19 others(33): Show c.1944_*1945insTTTTTTGTTGTTGGTTGGTTGG	LRRC8A	ENSG00000136802.12	transcript	ENST00000372600.9	protein_coding		277		chr9	TogoVar
LRRC8A_chr9_128877133_128923039	128918321	G G	GTTGTTGG others(15): Show GTTGTTGGTTGGTTGGTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0098 a0001c0002t0001g0098	1	344	0.0029	22	c.19 others(33): Show c.1950_*1951insTTGTTGGTTGGTTGGTTTTTTT	LRRC8A	ENSG00000136802.12	transcript	ENST00000372600.9	protein_coding		283		chr9	TogoVar
LRRC8B_chr1_89519829_89602861	89541710	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0115 a0001c0001t0002g0115	1	324	0.0031	22	c.-24 others(43): Show c.-241+16706_-241+16727dupAAAAAAAAAAAAAAAAAAAAAA	LRRC8B	ENSG00000197147.15	transcript	ENST00000330947.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8B_chr1_89519829_89602861	89577818	A A	AAACCCAG others(15): Show AAACCCAGTTATAATGCAGTTAT	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0057 a0001c0002t0003g0057	1	324	0.0031	22	c.-12 others(41): Show c.-124-1754_-124-1733dupTTATAACCCAGTTATAATGCAG	LRRC8B	ENSG00000197147.15	transcript	ENST00000330947.7	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8D_chr1_89816032_89941611	89860809	T T	TATATATA others(15): Show TATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	210	0.0048	22	c.-3+ others(39): Show c.-3+17028_-3+17029insTATATATATATATATATACACA	LRRC8D	ENSG00000171492.14	transcript	ENST00000337338.9	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8D_chr1_89816032_89941611	89881699	A A	AAGGCATG others(15): Show AAGGCATGATCATGCCTTTTCTT	intron_variant intron_variant	MODIFIER	HG00544.hp1 NA18952.hp1 HG00544.hp1 NA18952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0156 a0001c0001t0001g0200 a0001c0001t0001g0156 a0001c0001t0001g0200	2	210	0.0095	22	c.-3+ others(39): Show c.-3+37926_-3+37947dupTCATGCCTTTTCTTAGGCATGA	LRRC8D	ENSG00000171492.14	transcript	ENST00000337338.9	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC9_chr14_59915144_60071817	59965882	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0083 a0001c0001t0019g0083	1	322	0.0031	22	c.121 others(39): Show c.1212-690_1212-669dupAAAAAAAAAAAAAAAAAAAAAA	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding	10/32		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC9_chr14_59915144_60071817	60067740	A A	AATATATA others(15): Show AATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01496.hp1 HG02602.hp1 NA18939.hp2 others(11): Show HG01496.hp1 HG02602.hp1 NA18939.hp2 NA18960.hp1 NA18960.hp2 NA18966.hp2 NA18980.hp2 NA18984.hp2 NA19004.hp2 NA19006.hp2 NA19067.hp1 NA19079.hp2 NA19082.hp2 NA19085.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0003 a0004c0008 a0001c0001 a0002c0003 a0004c0008	a0001c0001t0001 a0001c0001t0003 a0001c0001t0015 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0015 a0001c0001t0039 a0001c0001t0042 a0002c0003t0005 a0004c0008t0015	a0001c0001t0001g0061 a0001c0001t0001g0221 a0001c0001t0001g0224 others(10): Show a0001c0001t0001g0061 a0001c0001t0001g0221 a0001c0001t0001g0224 a0001c0001t0001g0231 a0001c0001t0003g0029 a0001c0001t0003g0047 a0001c0001t0015g0052 a0001c0001t0015g0060 a0001c0001t0015g0096 a0001c0001t0039g0068 a0001c0001t0042g0184 a0002c0003t0005g0001 a0004c0008t0015g0036	14	322	0.0435	22	c.43 others(33): Show c.4378_*4379insATATATATATATATATATATAT	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding		924		chr14	TogoVar
LRRC9_chr14_59915144_60071817	60067760	T T	TATATATA others(15): Show TATATATATATATATATATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18983.hp2 NA18988.hp1 NA19004.hp1 others(5): Show NA18983.hp2 NA18988.hp1 NA19004.hp1 NA19012.hp2 NA19065.hp2 NA19068.hp2 NA19079.hp1 NA19088.hp1	a0002 a0006 a0002 a0006	a0002c0003 a0006c0009 a0002c0003 a0006c0009	a0002c0003t0005 a0006c0009t0005 a0002c0003t0005 a0006c0009t0005	a0002c0003t0005g0185 a0002c0003t0005g0192 a0002c0003t0005g0194 others(5): Show a0002c0003t0005g0185 a0002c0003t0005g0192 a0002c0003t0005g0194 a0002c0003t0005g0196 a0002c0003t0005g0197 a0002c0003t0005g0198 a0006c0009t0005g0191 a0006c0009t0005g0203	8	322	0.0248	22	c.43 others(33): Show c.4398_*4399insATATATATATATATATATATAA	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding		944		chr14	TogoVar
LRRFIP1_chr2_237622587_237786643	237681678	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0061 a0001c0001t0001g0061	1	276	0.0036	22	c.97- others(39): Show c.97-26847_97-26846insTTTTTTTTTTTTTTTTTTTTTT	LRRFIP1	ENSG00000124831.20	transcript	ENST00000308482.14	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
LRRIQ1_chr12_85031351_85250105	85102949	A A	AATATATA others(15): Show AATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02080.hp2 HG02135.hp2 others(2): Show HG02040.hp2 HG02080.hp2 HG02135.hp2 NA18978.hp1 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0012 a0001c0001t0002g0129 a0001c0001t0002g0136 others(2): Show a0001c0001t0002g0012 a0001c0001t0002g0129 a0001c0001t0002g0136 a0001c0001t0002g0142 a0001c0001t0002g0156	5	228	0.0219	22	c.321 others(41): Show c.3210-1054_3210-1053insTATATATATATATATATATATA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	13/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85102955	A A	AATATATA others(15): Show AATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0004 a0004	a0004c0008 a0004c0008	a0004c0008t0001 a0004c0008t0001	a0004c0008t0001g0221 a0004c0008t0001g0221	1	228	0.0044	22	c.321 others(41): Show c.3210-1048_3210-1047insTATATATATATATATATATATA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	13/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85174701	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02602.hp2 HG01074.hp1 HG02602.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0202 a0003c0004t0001g0211 a0003c0004t0001g0202 a0003c0004t0001g0211	2	228	0.0088	22	c.482 others(43): Show c.4822+13988_4822+14009dupAAAAAAAAAAAAAAAAAAAAAA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85236829	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02970.hp1 HG02630.hp2 HG02970.hp1	a0004 a0004	a0004c0008 a0004c0008	a0004c0008t0001 a0004c0008t0001	a0004c0008t0001g0221 a0004c0008t0001g0224 a0004c0008t0001g0221 a0004c0008t0001g0224	2	228	0.0088	22	c.501 others(41): Show c.5016+4073_5016+4074insTATATATATATATATATATATA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26			chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02647.hp2 NA18906.hp2 NA18980.hp2 HG02647.hp2 NA18906.hp2 NA18980.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0009 a0006c0007 a0001c0001 a0001c0009 a0006c0007	a0001c0001t0002 a0001c0009t0001 a0006c0007t0001 a0001c0001t0002 a0001c0009t0001 a0006c0007t0001	a0001c0001t0002g0148 a0001c0009t0001g0219 a0006c0007t0001g0198 a0001c0001t0002g0148 a0001c0009t0001g0219 a0006c0007t0001g0198	3	228	0.0132	22	c.501 others(41): Show c.5016+4079_5016+4100dupATATATATATATATATATATAT	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ4_chr3_169807870_169842773	169830377	G G	GAAAAAAA others(15): Show GAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0288 a0001c0001t0001g0288	1	386	0.0026	22	c.119 others(38): Show c.1195-104_1195-83dupAAAAAAAAAAAAAAAAAAAAAA	LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRK1_chr15_100914357_101083257	100956455	C C	CTTTTTCT others(15): Show CTTTTTCTTTTCTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG03453.hp2 HG04184.hp1 others(5): Show HG01106.hp2 HG03453.hp2 HG04184.hp1 NA18939.hp1 NA18946.hp1 NA18966.hp2 NA19062.hp2 NA19077.hp1	a0001 a0005 a0025 a0001 a0005 a0025	a0001c0002 a0001c0083 a0005c0019 others(3): Show a0001c0002 a0001c0083 a0005c0019 a0005c0076 a0005c0106 a0025c0096	a0001c0002t0187 a0001c0083t0178 a0005c0019t0025 others(5): Show a0001c0002t0187 a0001c0083t0178 a0005c0019t0025 a0005c0019t0146 a0005c0019t0147 a0005c0076t0025 a0005c0106t0144 a0025c0096t0087	a0001c0002t0187g0070 a0001c0083t0178g0081 a0005c0019t0025g0087 others(5): Show a0001c0002t0187g0070 a0001c0083t0178g0081 a0005c0019t0025g0087 a0005c0019t0146g0222 a0005c0019t0147g0315 a0005c0076t0025g0316 a0005c0106t0144g0317 a0025c0096t0087g0193	8	338	0.0237	22	c.98- others(39): Show c.98-17344_98-17343insCTTTTCTTTTTTTTTTTTTTTT	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRK2_chr12_40219997_40374285	40247505	C C	CATGTATA others(15): Show CATGTATATAAATATACATACAA	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0027 a0027	a0027c0053 a0027c0053	a0027c0053t0020 a0027c0053t0020	a0027c0053t0020g0013 a0027c0053t0020g0013	1	382	0.0026	22	c.839 others(39): Show c.839-2301_839-2280dupCAAATGTATATAAATATACATA	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	7/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40293894	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01361.hp1 HG01496.hp2 others(3): Show HG00735.hp2 HG01361.hp1 HG01496.hp2 HG02004.hp2 NA18960.hp2 NA19006.hp2	a0004 a0004	a0004c0006 a0004c0045 a0004c0055 a0004c0006 a0004c0045 a0004c0055	a0004c0006t0001 a0004c0006t0008 a0004c0045t0001 others(1): Show a0004c0006t0001 a0004c0006t0008 a0004c0045t0001 a0004c0055t0001	a0004c0006t0001g0209 a0004c0006t0001g0340 a0004c0006t0001g0358 others(3): Show a0004c0006t0001g0209 a0004c0006t0001g0340 a0004c0006t0001g0358 a0004c0006t0008g0356 a0004c0045t0001g0116 a0004c0055t0001g0341	6	382	0.0157	22	c.280 others(39): Show c.2808+232_2808+233insTATATATATATATATATATATA	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	21/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GACATATA others(15): Show GACATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01496.hp1 HG02132.hp1 others(3): Show HG01358.hp1 HG01496.hp1 HG02132.hp1 HG03139.hp2 NA18966.hp2 NA18970.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 a0001c0001 a0001c0003 a0001c0006	a0001c0001t0001 a0001c0003t0001 a0001c0003t0003 others(2): Show a0001c0001t0001 a0001c0003t0001 a0001c0003t0003 a0001c0003t0004 a0001c0006t0004	a0001c0001t0001g0098 a0001c0003t0001g0151 a0001c0003t0003g0170 others(3): Show a0001c0001t0001g0098 a0001c0003t0001g0151 a0001c0003t0003g0170 a0001c0003t0003g0314 a0001c0003t0004g0102 a0001c0006t0004g0104	6	422	0.0142	22	c.-27 others(41): Show c.-278-9838_-278-9837insCATATATATATATATATATATA	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GAGATATA others(15): Show GAGATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18979.hp1 NA18979.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0375 a0001c0002t0006g0375	1	422	0.0024	22	c.-27 others(41): Show c.-278-9838_-278-9837insGATATATATATATATATATATA	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GATATATA others(15): Show GATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG00408.hp1 others(16): Show HG00140.hp1 HG00323.hp2 HG00408.hp1 HG01361.hp2 HG01952.hp1 HG01975.hp1 HG02486.hp1 HG02486.hp2 HG02602.hp1 HG02630.hp1 HG02896.hp1 HG02897.hp2 HG03471.hp2 HG03516.hp1 HG03669.hp1 NA18977.hp2 NA18999.hp2 NA19012.hp1 NA19081.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0012 a0002c0009 a0008c0016	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(11): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0020 a0001c0002t0002 a0001c0002t0018 a0001c0002t0043 a0001c0003t0027 a0001c0004t0005 a0001c0004t0008 a0001c0004t0011 a0001c0012t0002 a0002c0009t0002 a0008c0016t0003	a0001c0001t0001g0244 a0001c0001t0001g0278 a0001c0001t0003g0019 others(15): Show a0001c0001t0001g0244 a0001c0001t0001g0278 a0001c0001t0003g0019 a0001c0001t0003g0318 a0001c0001t0003g0364 a0001c0001t0004g0042 a0001c0001t0004g0055 a0001c0001t0020g0093 a0001c0002t0002g0088 a0001c0002t0018g0054 a0001c0002t0043g0207 a0001c0003t0027g0056 a0001c0004t0005g0338 a0001c0004t0008g0275 a0001c0004t0011g0070 a0001c0012t0002g0294 a0002c0009t0002g0144 a0008c0016t0003g0356	19	422	0.0450	22	c.-27 others(41): Show c.-278-9832_-278-9811dupATATATATATATATATATATAT	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN1_chr3_3794431_3854834	3834552	A A	ATATATAT others(15): Show ATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0280 a0001c0001t0001g0280	1	422	0.0024	22	c.-27 others(41): Show c.-278-9811_-278-9810insATATATATATATATATATATGT	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN1_chr3_3794431_3854834	3834564	T T	TATATATA others(15): Show TATATATATATATATGATATATA	intron_variant intron_variant	MODIFIER	NA18979.hp2 NA18979.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0077 a0001c0001t0003g0077	1	422	0.0024	22	c.-27 others(41): Show c.-278-9800_-278-9799insATATATATATATATGATATATA	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1			chr3	TogoVar
LRRN2_chr1_204612170_204690738	204631256	C C	CAATATAT others(15): Show CAATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03688.hp1 NA19004.hp2 HG03579.hp1 HG03688.hp1 NA19004.hp2	a0002 a0006 a0002 a0006	a0002c0003 a0006c0011 a0002c0003 a0006c0011	a0002c0003t0003 a0006c0011t0001 a0002c0003t0003 a0006c0011t0001	a0002c0003t0003g0045 a0002c0003t0003g0120 a0006c0011t0001g0319 a0002c0003t0003g0045 a0002c0003t0003g0120 a0006c0011t0001g0319	3	328	0.0092	22	c.-22 others(43): Show c.-226-11039_-226-11038insTATATATATATATATATATATT	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204631256	C C	CTATATAT others(15): Show CTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02572.hp1 NA19086.hp1 HG02572.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0244 a0001c0001t0001g0301 a0001c0001t0001g0244 a0001c0001t0001g0301	2	328	0.0061	22	c.-22 others(43): Show c.-226-11060_-226-11039dupTATATATATATATATATATATA	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRN2_chr1_204612170_204690738	204652263	C C	CCCCCGCC others(15): Show CCCCCGCCCCCCCCGCCCCCCCG	intron_variant intron_variant	MODIFIER	NA18991.hp1 NA18991.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0264 a0001c0002t0002g0264	1	328	0.0031	22	c.-22 others(43): Show c.-226-32046_-226-32045insCGGGGGGGCGGGGGGGGCGGGG	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRTM2_chr5_138863921_138880335	138870057	T T	TATTTTTC others(15): Show TATTTTTCTGGTTCTTAATGGTC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18968.hp1 NA18968.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0052 a0001c0001t0044g0052	1	364	0.0028	22	c.29 others(33): Show c.2931_*2952dupGACCATTAAGAACCAGAAAAAT	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2952		chr5	TogoVar
LRRTM3_chr10_66921036_67106551	66978544	A A	AATATATA others(15): Show AATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19080.hp1 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0181 a0001c0001t0001g0181	1	294	0.0034	22	c.153 others(43): Show c.1536+50093_1536+50094insTATATATATATATATATATATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAAAAA others(15): Show AAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0209 a0002c0002t0004g0209	1	294	0.0034	22	c.153 others(43): Show c.1536+50101_1536+50102insAAAAAATATATATATATATATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66999513	A A	AGCTTCAA others(15): Show AGCTTCAATCACTATTGTCTCTC	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00735.hp2 HG01496.hp1 others(14): Show HG00438.hp2 HG00735.hp2 HG01496.hp1 HG01993.hp1 HG02027.hp1 NA18747.hp1 NA18942.hp1 NA18943.hp2 NA18947.hp1 NA18957.hp2 NA18960.hp1 NA18964.hp2 NA19005.hp1 NA19060.hp2 NA19070.hp2 NA19074.hp1 NA19076.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0004 a0001c0001t0001 a0002c0002t0004	a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0204 others(14): Show a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0204 a0001c0001t0001g0205 a0002c0002t0004g0075 a0002c0002t0004g0089 a0002c0002t0004g0093 a0002c0002t0004g0099 a0002c0002t0004g0111 a0002c0002t0004g0174 a0002c0002t0004g0175 a0002c0002t0004g0176 a0002c0002t0004g0179 a0002c0002t0004g0191 a0002c0002t0004g0194 a0002c0002t0004g0203 a0002c0002t0004g0209	17	294	0.0578	22	c.153 others(43): Show c.1536+71062_1536+71083dupGCTTCAATCACTATTGTCTCTC	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76812673	C C	CTTTCTTT others(15): Show CTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01074.hp2 HG01192.hp1 others(3): Show HG00621.hp2 HG01074.hp2 HG01192.hp1 HG01346.hp2 NA18951.hp2 NA18970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0056 a0001c0001t0002g0022 a0001c0001t0004g0013 others(3): Show a0001c0001t0001g0056 a0001c0001t0002g0022 a0001c0001t0004g0013 a0001c0001t0004g0027 a0001c0001t0004g0058 a0001c0001t0004g0095	6	128	0.0469	22	c.155 others(43): Show c.1552-63758_1552-63757insAAGAAAGAAAGAAAGAAAGAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76812792	C C	CCCCCATT others(15): Show CCCCCATTCCTCCTCCTCTCCCT	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	128	0.0078	22	c.155 others(43): Show c.1552-63877_1552-63876insAGGGAGAGGAGGAGGAATGGGG	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76873506	G G	GTGTATAT others(15): Show GTGTATATATATATATACATATA	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01516.hp1 HG02135.hp1 others(3): Show HG01261.hp1 HG01516.hp1 HG02135.hp1 HG02145.hp1 HG03490.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0006 a0001c0001t0001g0030 a0001c0001t0001g0057 others(3): Show a0001c0001t0001g0006 a0001c0001t0001g0030 a0001c0001t0001g0057 a0001c0001t0001g0076 a0001c0001t0002g0007 a0001c0001t0004g0073	6	128	0.0469	22	c.155 others(45): Show c.1552-124591_1552-124590insTATATGTATATATATATATACA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76942674	A A	ATGTGTGT others(15): Show ATGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02809.hp2 HG02886.hp1 HG02145.hp2 HG02809.hp2 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0002 a0001c0001t0001g0113 a0001c0001t0002g0081 a0001c0001t0001g0002 a0001c0001t0001g0113 a0001c0001t0002g0081	3	128	0.0234	22	c.155 others(45): Show c.1552-193759_1552-193758insCACACACACACACACACACACA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76974201	T T	TATATACA others(15): Show TATATACATATATATATACATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0070 a0001c0001t0002g0070	1	128	0.0078	22	c.155 others(45): Show c.1552-225286_1552-225285insGTATGTATATATATATGTATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG04199.hp2 NA19030.hp2 HG04199.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0092 a0001c0001t0002g0087 a0001c0001t0001g0092 a0001c0001t0002g0087	2	128	0.0156	22	c.155 others(45): Show c.1552-230626_1552-230625insTATATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77075914	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0120 a0001c0001t0011g0120	1	128	0.0078	22	c.155 others(45): Show c.1552-327020_1552-326999dupTTTTTTTTTTTTTTTTTTTTTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77103667	A A	ATATATAT others(15): Show ATATATATATATATATATATATC	intron_variant intron_variant	MODIFIER	NA18968.hp1 NA18968.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0031 a0001c0001t0003g0031	1	128	0.0078	22	c.155 others(45): Show c.1552-354752_1552-354751insGATATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77207372	T T	TATATATA others(15): Show TATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG02723.hp2 HG03704.hp1 others(1): Show HG00621.hp2 HG02723.hp2 HG03704.hp1 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0012 a0001c0001t0001 a0001c0001t0004 a0001c0001t0012	a0001c0001t0001g0064 a0001c0001t0001g0106 a0001c0001t0004g0095 others(1): Show a0001c0001t0001g0064 a0001c0001t0001g0106 a0001c0001t0004g0095 a0001c0001t0012g0128	4	128	0.0313	22	c.155 others(45): Show c.1551+310945_1551+310946insGTGTGTGTATATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77217468	T T	TATATATA others(15): Show TATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA18961.hp2 NA18961.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0072 a0001c0001t0002g0072	1	128	0.0078	22	c.155 others(45): Show c.1551+300849_1551+300850insGTATATATATATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77285340	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01192.hp1 HG01261.hp2 others(4): Show HG01074.hp1 HG01192.hp1 HG01261.hp2 HG01496.hp1 HG02738.hp1 HG03704.hp1 NA18970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0012 a0001c0001t0001 a0001c0001t0002 a0001c0001t0012	a0001c0001t0001g0056 a0001c0001t0002g0022 a0001c0001t0002g0036 others(4): Show a0001c0001t0001g0056 a0001c0001t0002g0022 a0001c0001t0002g0036 a0001c0001t0002g0070 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0012g0128	7	128	0.0547	22	c.155 others(45): Show c.1551+232956_1551+232977dupTATATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77301561	C C	CTTGATAA others(15): Show CTTGATAAAAAATAAGAAAGCTA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0127 a0001c0001t0002g0127	1	128	0.0078	22	c.155 others(45): Show c.1551+216735_1551+216756dupTAGCTTTCTTATTTTTTATCAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77351614	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02886.hp1 HG01891.hp2 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0113 a0001c0001t0002g0018 a0001c0001t0001g0113 a0001c0001t0002g0018	2	128	0.0156	22	c.155 others(45): Show c.1551+166682_1551+166703dupTATATATATATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77480783	G G	GCAGTGTG others(15): Show GCAGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0108 a0001c0001t0003g0108	1	128	0.0078	22	c.155 others(43): Show c.1551+37534_1551+37535insACACACACACACACACACACTG	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRWD1_chr7_102459984_102478168	102467169	G G	GGTGTGTG others(15): Show GGTGTGTGTGTATGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0117 a0001c0002t0002g0117	1	428	0.0023	22	c.433 others(37): Show c.433-169_433-168insTGTGTGTGTATGTGTGTGTGTG	LRWD1	ENSG00000161036.13	transcript	ENST00000292616.10	protein_coding	3/14		INFO_REALIGN_3_PRIME	chr7	TogoVar

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