Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
MSH4_chr1_75791882_75918242	75907684	C C	CTCTCTCT others(15): Show CTCTCTCTCTATACATATATATA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0095 a0002c0003t0001g0095	1	332	0.0030	22	c.262 others(41): Show c.2620-5011_2620-5010insCTCTCTCTATACATATATATAT	MSH4	ENSG00000057468.7	transcript	ENST00000263187.4	protein_coding	19/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
MSH5_chr6_31735005_31767676	31746080	T T	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00735.hp2 HG01243.hp2 others(9): Show HG00642.hp2 HG00735.hp2 HG01243.hp2 HG01255.hp1 HG02717.hp1 NA18939.hp1 NA18953.hp2 NA18956.hp1 NA18967.hp2 NA18991.hp1 NA19090.hp2 NA20300.hp1	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0002 a0002c0003 a0010c0011 a0001c0002 a0002c0003 a0010c0011	a0001c0002t0001 a0002c0003t0001 a0010c0011t0001 a0001c0002t0001 a0002c0003t0001 a0010c0011t0001	a0001c0002t0001g0099 a0001c0002t0001g0131 a0001c0002t0001g0138 others(8): Show a0001c0002t0001g0099 a0001c0002t0001g0131 a0001c0002t0001g0138 a0001c0002t0001g0180 a0001c0002t0001g0181 a0002c0003t0001g0026 a0002c0003t0001g0045 a0002c0003t0001g0077 a0002c0003t0001g0090 a0002c0003t0001g0102 a0010c0011t0001g0050	12	397	0.0302	22	c.766 others(37): Show c.766+774_766+795dupTGTGTGTGTGTGTGTGTGTGTG	MSH5	ENSG00000204410.16	transcript	ENST00000375750.9	protein_coding	9/24		INFO_REALIGN_3_PRIME	chr6	TogoVar
MSH6_chr2_47778145_47811953	47788917	T T	TTTTGTTT others(15): Show TTTTGTTTTTTTTGTTTTTTTTG	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0225 a0002c0002t0001g0225	1	390	0.0026	22	c.261 others(39): Show c.261-2007_261-2006insGTTTTTTTTGTTTTTTTTGTTT	MSH6	ENSG00000116062.19	transcript	ENST00000234420.11	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
MSH6_chr2_47778145_47811953	47788930	T T	TGTTTTTG others(15): Show TGTTTTTGTTTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0278 a0002c0002t0001g0278	1	390	0.0026	22	c.261 others(39): Show c.261-1997_261-1996insGTTTTTGTTTTTTTTTTTTTTG	MSH6	ENSG00000116062.19	transcript	ENST00000234420.11	protein_coding	1/9			chr2	TogoVar
MSI2_chr17_57251523_57689689	57410008	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19056.hp2 NA20129.hp1 NA19056.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0029 a0001c0001t0002 a0001c0001t0029	a0001c0001t0002g0086 a0001c0001t0029g0149 a0001c0001t0002g0086 a0001c0001t0029g0149	2	168	0.0119	22	c.405 others(39): Show c.405+8554_405+8555insAAAAAAAAAAAAAAAAAAAAAA	MSI2	ENSG00000153944.12	transcript	ENST00000284073.7	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr17	TogoVar
MSI2_chr17_57251523_57689689	57502636	T T	TATATATA others(15): Show TATATATATATATATATATATAG	intron_variant intron_variant	MODIFIER	HG00642.hp1 NA18942.hp2 NA19056.hp1 HG00642.hp1 NA18942.hp2 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0032 a0001c0001t0076 a0001c0001t0004 a0001c0001t0032 a0001c0001t0076	a0001c0001t0004g0152 a0001c0001t0032g0122 a0001c0001t0076g0093 a0001c0001t0004g0152 a0001c0001t0032g0122 a0001c0001t0076g0093	3	168	0.0179	22	c.406 others(41): Show c.406-27039_406-27038insTATATATATATATATATATAGA	MSI2	ENSG00000153944.12	transcript	ENST00000284073.7	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr17	TogoVar
MSL1_chr17_40116971_40141917	40118724	C C	CATATATA others(15): Show CATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	356	0.0028	22	c.-38 others(33): Show c.-3889_-3888insATATATATATATATATATATAT	MSL1	ENSG00000188895.12	transcript	ENST00000398532.9	protein_coding		3246		chr17	TogoVar
MSL2_chr3_136143917_136201335	136180816	G G	GGGAAGAG others(15): Show GGGAAGAGGAAGGAAGGAAGGAA	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0301 a0001c0001t0002g0301	1	310	0.0032	22	c.142 others(41): Show c.142+14155_142+14156insTTCCTTCCTTCCTTCCTCTTCC	MSL2	ENSG00000174579.5	transcript	ENST00000309993.3	protein_coding	1/1			chr3	TogoVar
MSLN_chr16_755734_773862	767962	A A	AGGGGGGC others(15): Show AGGGGGGCGCGTGGGGGTGCGTG	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18943.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0337 a0002c0002t0002g0337	1	388	0.0026	22	c.159 others(39): Show c.1597-412_1597-411insGCGCGTGGGGGTGCGTGGGGGG	MSLN	ENSG00000102854.16	transcript	ENST00000545450.7	protein_coding	16/17		INFO_REALIGN_3_PRIME	chr16	TogoVar
MSMB_chr10_46028313_46051269	46044575	G G	GAAAAAAA others(15): Show GAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0071	1	446	0.0022	22	c.3+1 others(35): Show c.3+1638_3+1659dupTTTTTTTTTTTTTTTTTTTTTT	MSMB	ENSG00000263639.7	transcript	ENST00000582163.3	protein_coding	1/3			chr10	TogoVar
MSR1_chr8_16102881_16197651	16189431	C C	CATATTTT others(15): Show CATATTTTATATATATTTTATAT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0044 a0001c0001t0014g0044	1	330	0.0030	22	c.-5+ others(37): Show c.-5+3166_-5+3167insATATAAAATATATATAAAATAT	MSR1	ENSG00000038945.15	transcript	ENST00000262101.10	protein_coding	1/9			chr8	TogoVar
MSR1_chr8_16102881_16197651	16189618	A A	ATATATAT others(15): Show ATATATATTTGATATATATTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01256.hp1 HG01258.hp1 others(3): Show HG01175.hp1 HG01256.hp1 HG01258.hp1 HG03704.hp1 HG03834.hp1 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0028 a0001c0001t0034 others(2): Show a0001c0001t0001 a0001c0001t0028 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036	a0001c0001t0001g0171 a0001c0001t0001g0174 a0001c0001t0028g0173 others(3): Show a0001c0001t0001g0171 a0001c0001t0001g0174 a0001c0001t0028g0173 a0001c0001t0034g0176 a0001c0001t0035g0175 a0001c0001t0036g0169	6	330	0.0182	22	c.-5+ others(37): Show c.-5+2979_-5+2980insAAAAATATATATCAAATATATA	MSR1	ENSG00000038945.15	transcript	ENST00000262101.10	protein_coding	1/9			chr8	TogoVar
MSRA_chr8_10049292_10433891	10113292	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02257.hp1 HG02622.hp2 others(1): Show HG02055.hp2 HG02257.hp1 HG02622.hp2 HG04199.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0003 a0001c0001t0005	a0001c0001t0003g0012 a0001c0001t0003g0026 a0001c0001t0003g0109 others(1): Show a0001c0001t0003g0012 a0001c0001t0003g0026 a0001c0001t0003g0109 a0001c0001t0005g0121	4	286	0.0140	22	c.142 others(41): Show c.142+58635_142+58656dupTTTTTTTTTTTTTTTTTTTTTT	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10155000	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18983.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0150 a0001c0001t0001g0150	1	286	0.0035	22	c.143 others(41): Show c.143-52832_143-52831insATATATATATATATATATATAT	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10155002	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0062 a0001c0001t0003g0062	1	286	0.0035	22	c.143 others(41): Show c.143-52819_143-52818insTATATATATATATATATATATA	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283160	A A	ACACACAC others(15): Show ACACACACACTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0059 a0001c0001t0004g0059	1	286	0.0035	22	c.332 others(41): Show c.332-18373_332-18372insACACACACTCTCTCTCTCTCTC	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283160	A A	ACACACAC others(15): Show ACACACACTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0222 a0001c0001t0006g0222	1	286	0.0035	22	c.332 others(41): Show c.332-18373_332-18372insACACACTCTCTCTCTCTCTCTC	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283160	A A	ACACACTC others(15): Show ACACACTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03491.hp2 HG03492.hp2 others(2): Show HG03225.hp2 HG03491.hp2 HG03492.hp2 HG03579.hp2 NA19087.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0003 a0001c0001t0004 a0002c0003t0004 a0001c0001t0003 a0001c0001t0004 a0002c0003t0004	a0001c0001t0003g0062 a0001c0001t0003g0104 a0001c0001t0004g0079 others(2): Show a0001c0001t0003g0062 a0001c0001t0003g0104 a0001c0001t0004g0079 a0002c0003t0004g0015 a0002c0003t0004g0016	5	286	0.0175	22	c.332 others(41): Show c.332-18373_332-18372insACACTCTCTCTCTCTCTCTCTC	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283802	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0221 a0001c0001t0011g0221	1	286	0.0035	22	c.332 others(41): Show c.332-17718_332-17697dupTATATATATATATATATATATA	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283832	T T	TACACACA others(15): Show TACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01515.hp1 HG00733.hp2 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0211 a0001c0001t0001g0233 a0001c0001t0001g0211 a0001c0001t0001g0233	2	286	0.0070	22	c.332 others(41): Show c.332-17701_332-17700insCACACACACACACACACACACA	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283834	T T	TACACACA others(15): Show TACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0197 a0001c0001t0001g0197	1	286	0.0035	22	c.332 others(41): Show c.332-17699_332-17698insCACACACACACACACACACACA	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283836	T T	TATATATA others(15): Show TATATATATATACACACACACAC	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02451.hp1 HG02486.hp2 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0010 a0001c0001t0004g0031 a0001c0001t0004g0071 a0001c0001t0001g0010 a0001c0001t0004g0031 a0001c0001t0004g0071	3	286	0.0105	22	c.332 others(41): Show c.332-17697_332-17696insTATATATATACACACACACACA	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283836	T T	TATATATA others(15): Show TATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	NA18971.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0281 a0001c0001t0001g0281	1	286	0.0035	22	c.332 others(41): Show c.332-17697_332-17696insTATATATATATATACACACACA	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10283836	T T	TATATATA others(15): Show TATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01175.hp2 HG00323.hp1 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0201 a0001c0001t0001g0025 a0001c0001t0001g0201	2	286	0.0070	22	c.332 others(41): Show c.332-17697_332-17696insTATATATATATATATACACACA	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10323745	C C	CGTGTGTG others(15): Show CGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0284 a0001c0001t0001g0284	1	286	0.0035	22	c.543 others(39): Show c.543+3765_543+3786dupGTGTGTGTGTGTGTGTGTGTGT	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10363738	C C	CCACACAC others(15): Show CCACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00423.hp1 HG00558.hp2 others(32): Show HG00323.hp1 HG00423.hp1 HG00558.hp2 HG00738.hp1 HG01255.hp2 HG01257.hp1 HG01258.hp2 HG01433.hp2 HG01516.hp2 HG01891.hp2 HG01928.hp1 HG02602.hp1 HG02630.hp2 HG02717.hp1 HG02886.hp2 HG02922.hp2 HG03139.hp1 HG03486.hp1 HG03491.hp1 HG03927.hp1 HG04228.hp1 NA18747.hp2 NA18939.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18959.hp2 NA18967.hp2 NA18977.hp1 NA18977.hp2 NA18988.hp2 NA19030.hp1 NA19065.hp1 NA20805.hp1 NA20905.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0004 a0001c0001 a0001c0002 a0003c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0018 a0001c0002t0002 a0003c0004t0001	a0001c0001t0001g0086 a0001c0001t0001g0149 a0001c0001t0001g0187 others(32): Show a0001c0001t0001g0086 a0001c0001t0001g0149 a0001c0001t0001g0187 a0001c0001t0001g0196 a0001c0001t0001g0201 a0001c0001t0001g0229 a0001c0001t0003g0094 a0001c0001t0003g0096 a0001c0001t0003g0106 a0001c0001t0003g0119 a0001c0001t0003g0127 a0001c0001t0003g0177 a0001c0001t0003g0202 a0001c0001t0003g0228 a0001c0001t0003g0278 a0001c0001t0004g0059 a0001c0001t0004g0075 a0001c0001t0004g0081 a0001c0001t0018g0077 a0001c0002t0002g0017 a0001c0002t0002g0092 a0001c0002t0002g0099 a0001c0002t0002g0111 a0001c0002t0002g0114 a0001c0002t0002g0128 a0001c0002t0002g0140 a0001c0002t0002g0161 a0001c0002t0002g0165 a0001c0002t0002g0166 a0001c0002t0002g0179 a0001c0002t0002g0237 a0001c0002t0002g0253 a0001c0002t0002g0255 a0001c0002t0002g0256 a0003c0004t0001g0153	35	286	0.1224	22	c.543 others(41): Show c.543+43769_543+43790dupACACACACACACACACACACAC	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10417419	G G	GACACACA others(15): Show GACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0032 a0001c0001t0004g0032	1	286	0.0035	22	c.544 others(41): Show c.544-10723_544-10702dupCACACACACACACACACACACA	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRA_chr8_10049292_10433891	10417754	T T	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02717.hp1 HG03098.hp1 others(2): Show HG02451.hp1 HG02717.hp1 HG03098.hp1 HG03239.hp2 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0002t0002	a0001c0001t0001g0260 a0001c0001t0003g0096 a0001c0001t0004g0071 others(2): Show a0001c0001t0001g0260 a0001c0001t0003g0096 a0001c0001t0004g0071 a0001c0002t0002g0173 a0001c0002t0002g0212	5	286	0.0175	22	c.544 others(41): Show c.544-10390_544-10369dupGTGTGTGTGTGTGTGTGTGTGT	MSRA	ENSG00000175806.15	transcript	ENST00000317173.9	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
MSRB1_chr16_1933229_1948199	1934084	G G	GTTTTTTT others(15): Show GTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02965.hp2 HG03486.hp1 HG03834.hp2 others(5): Show HG02965.hp2 HG03486.hp1 HG03834.hp2 NA18747.hp2 NA18971.hp2 NA19066.hp1 NA19081.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0008 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0024	8	448	0.0179	22	c.50 others(33): Show c.5027_*5028insAAAAAAAAAAAAAAAAAAAAAA	MSRB1	ENSG00000198736.13	transcript	ENST00000361871.8	protein_coding		4144		chr16	TogoVar
MSRB2_chr10_23090579_23127013	23096352	C C	CTCTCTCT others(15): Show CTCTCTCTCTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0064 a0001c0001t0016g0064	1	442	0.0023	22	c.118 others(37): Show c.118+627_118+628insCTCTCTCTGTGTGTGTGTGTGT	MSRB2	ENSG00000148450.13	transcript	ENST00000376510.8	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr10	TogoVar
MSRB2_chr10_23090579_23127013	23096352	C C	CTGTGTGT others(15): Show CTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03139.hp1 HG03540.hp1 HG03041.hp2 HG03139.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0286 a0001c0001t0001g0287 a0001c0001t0001g0304 a0001c0001t0001g0286 a0001c0001t0001g0287 a0001c0001t0001g0304	3	442	0.0068	22	c.118 others(37): Show c.118+647_118+648insGTGTGTGTGTGTGTGTGTGTGT	MSRB2	ENSG00000148450.13	transcript	ENST00000376510.8	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr10	TogoVar
MSS51_chr10_73418579_73438561	73436058	T T	TGCGCGCA others(15): Show TGCGCGCACGCGTGCACGCGCGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0008 a0002c0002t0002g0008	1	316	0.0032	22	c.-25 others(33): Show c.-2564_-2563insGCGCGCGTGCACGCGTGCGCGC	MSS51	ENSG00000166343.10	transcript	ENST00000299432.7	protein_coding		2498		chr10	TogoVar
MSS51_chr10_73418579_73438561	73436060	T T	TGCGCGCA others(15): Show TGCGCGCACGCGTGCACGCGCGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0008 a0002c0002t0002g0008	1	316	0.0032	22	c.-25 others(33): Show c.-2566_-2565insGCGCGCGTGCACGCGTGCGCGC	MSS51	ENSG00000166343.10	transcript	ENST00000299432.7	protein_coding		2500		chr10	TogoVar
MSTO1_chr1_155605218_155619951	155609217	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	398	0.0025	22	c.-10 others(33): Show c.-1032_-1031insTATATATATATATATATATATA	MSTO1	ENSG00000125459.18	transcript	ENST00000245564.8	protein_coding		1000		chr1	TogoVar
MSTO1_chr1_155605218_155619951	155609243	A A	ATATATAT others(15): Show ATATATATATATATATATATATT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18992.hp1 NA18998.hp2 NA18992.hp1 NA18998.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	2	398	0.0050	22	c.-10 others(33): Show c.-1006_-1005insTATATATATATATATATATATT	MSTO1	ENSG00000125459.18	transcript	ENST00000245564.8	protein_coding		974		chr1	TogoVar
MSTO1_chr1_155605218_155619951	155609243	A A	ATATATAT others(15): Show ATATATATATATATATATATTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0002 a0002c0002t0006g0002	1	398	0.0025	22	c.-10 others(33): Show c.-1006_-1005insTATATATATATATATATATTTT	MSTO1	ENSG00000125459.18	transcript	ENST00000245564.8	protein_coding		974		chr1	TogoVar
MSTO1_chr1_155605218_155619951	155609243	A A	ATATATAT others(15): Show ATATATATATATATATATTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18984.hp2 NA18984.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	398	0.0025	22	c.-10 others(33): Show c.-1006_-1005insTATATATATATATATATTTTTT	MSTO1	ENSG00000125459.18	transcript	ENST00000245564.8	protein_coding		974		chr1	TogoVar
MSTO1_chr1_155605218_155619951	155609243	A A	ATATATAT others(15): Show ATATATATATATATATTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18963.hp1 NA18963.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	398	0.0025	22	c.-10 others(33): Show c.-1006_-1005insTATATATATATATATTTTTTTT	MSTO1	ENSG00000125459.18	transcript	ENST00000245564.8	protein_coding		974		chr1	TogoVar
MT3_chr16_56584528_56596085	56592142	C C	CATATATA others(15): Show CATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp2 HG00735.hp2 HG02165.hp1 others(9): Show HG00673.hp2 HG00735.hp2 HG02165.hp1 HG02965.hp1 NA18960.hp2 NA18979.hp1 NA18995.hp1 NA19009.hp2 NA19011.hp2 NA19072.hp2 NA19079.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006	12	438	0.0274	22	c.11 others(33): Show c.1193_*1194insATATATATATATATATATATAT	MT3	ENSG00000087250.9	transcript	ENST00000200691.5	protein_coding		1058		chr16	TogoVar
MT4_chr16_56560073_56573957	56561683	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01928.hp1 HG01934.hp1 HG02300.hp2 others(16): Show HG01928.hp1 HG01934.hp1 HG02300.hp2 HG02622.hp1 HG03195.hp1 HG03516.hp1 NA18962.hp2 NA18974.hp1 NA18974.hp2 NA18978.hp1 NA18993.hp1 NA18998.hp2 NA19012.hp1 NA19056.hp2 NA19063.hp1 NA19063.hp2 NA19067.hp1 NA19076.hp1 NA19078.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0009 a0002c0002t0001g0010 a0002c0002t0001g0116 others(16): Show a0002c0002t0001g0009 a0002c0002t0001g0010 a0002c0002t0001g0116 a0002c0002t0001g0124 a0002c0002t0001g0125 a0002c0002t0001g0137 a0002c0002t0001g0142 a0002c0002t0001g0145 a0002c0002t0001g0150 a0002c0002t0001g0154 a0002c0002t0001g0156 a0002c0002t0001g0157 a0002c0002t0001g0160 a0002c0002t0001g0162 a0002c0002t0001g0163 a0002c0002t0001g0165 a0002c0002t0001g0166 a0002c0002t0001g0169 a0002c0002t0001g0170	19	428	0.0444	22	c.-34 others(33): Show c.-3446_-3445insTTTTTTTTTTTTTTTTTTTTTT	MT4	ENSG00000102891.4	transcript	ENST00000219162.4	protein_coding		3389		chr16	TogoVar
MT4_chr16_56560073_56573957	56568271	G G	GAGAGAAA others(15): Show GAGAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG04115.hp1 HG01123.hp2 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0054 a0001c0001t0001g0377 a0001c0001t0001g0054 a0001c0001t0001g0377	2	428	0.0047	22	c.97+ others(35): Show c.97+458_97+459insGAAAGAAAGAAAGAAAGAAAGA	MT4	ENSG00000102891.4	transcript	ENST00000219162.4	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr16	TogoVar
MT4_chr16_56560073_56573957	56568271	G G	GAGAGAGA others(15): Show GAGAGAGAGAGAGAGAGAAAGAA	intron_variant intron_variant	MODIFIER	NA18988.hp2 NA18988.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0393 a0001c0001t0001g0393	1	428	0.0023	22	c.97+ others(35): Show c.97+458_97+459insGAGAGAGAGAGAGAAAGAAAGA	MT4	ENSG00000102891.4	transcript	ENST00000219162.4	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr16	TogoVar
MTA1_chr14_105414827_105475729	105414844	C C	CGGGAGTG others(15): Show CGGGAGTGGGAAGGATCCTGGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0217 a0001c0001t0001g0217	1	304	0.0033	22	c.-51 others(33): Show c.-5192_-5191insGGGAGTGGGAAGGATCCTGGAG	MTA1	ENSG00000182979.18	transcript	ENST00000331320.12	protein_coding		4982		chr14	TogoVar
MTA3_chr2_42563632_42761946	42577105	A A	AAAAAATA others(15): Show AAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0280 a0001c0001t0002g0280	1	312	0.0032	22	c.97- others(37): Show c.97-2001_97-2000insAAAATATATATATATATATATA	MTA3	ENSG00000057935.14	transcript	ENST00000405094.2	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
MTA3_chr2_42563632_42761946	42594728	A A	ATATATAT others(15): Show ATATATATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG02615.hp1 NA18522.hp2 HG02615.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0002 a0001c0001t0004	a0001c0001t0002g0199 a0001c0001t0004g0222 a0001c0001t0002g0199 a0001c0001t0004g0222	2	312	0.0064	22	c.191 others(41): Show c.191-14729_191-14728insATATATATATATATATTTTTTT	MTA3	ENSG00000057935.14	transcript	ENST00000405094.2	protein_coding	3/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
MTA3_chr2_42563632_42761946	42594728	A A	ATATATAT others(15): Show ATATATATATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0208 a0001c0001t0004g0208	1	312	0.0032	22	c.191 others(41): Show c.191-14729_191-14728insATATATATATATATTTTTTTTT	MTA3	ENSG00000057935.14	transcript	ENST00000405094.2	protein_coding	3/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
MTA3_chr2_42563632_42761946	42594728	A A	ATATATAT others(15): Show ATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0226 a0001c0001t0001g0226	1	312	0.0032	22	c.191 others(41): Show c.191-14729_191-14728insATATATATATATTTTTTTTTTT	MTA3	ENSG00000057935.14	transcript	ENST00000405094.2	protein_coding	3/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
MTA3_chr2_42563632_42761946	42667570	T T	TTATGTGT others(15): Show TTATGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00642.hp1 HG01978.hp1 others(7): Show HG00099.hp1 HG00642.hp1 HG01978.hp1 HG02055.hp1 HG02897.hp2 HG02965.hp1 HG03139.hp2 HG03540.hp1 HG03704.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0012 a0001c0001t0021	a0001c0001t0001g0134 a0001c0001t0001g0232 a0001c0001t0001g0284 others(7): Show a0001c0001t0001g0134 a0001c0001t0001g0232 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0003g0283 a0001c0001t0004g0268 a0001c0001t0005g0133 a0001c0001t0012g0143 a0001c0001t0012g0249 a0001c0001t0021g0159	10	312	0.0321	22	c.702 others(39): Show c.702+7709_702+7710insATGTGTGTGTGTGTGTGTGTGT	MTA3	ENSG00000057935.14	transcript	ENST00000405094.2	protein_coding	8/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
MTA3_chr2_42563632_42761946	42711775	A A	AGTGTGTG others(15): Show AGTGTGTGTTTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01168.hp2 HG02572.hp2 others(1): Show HG00099.hp2 HG01168.hp2 HG02572.hp2 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0149 others(1): Show a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0149 a0001c0001t0003g0298	4	312	0.0128	22	c.152 others(41): Show c.1525+2680_1525+2681insTGTGTGTTTGTGTGTGTGTGTG	MTA3	ENSG00000057935.14	transcript	ENST00000405094.2	protein_coding	14/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
MTA3_chr2_42563632_42761946	42724277	A A	AACACACA others(15): Show AACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0060 a0001c0001t0005g0060	1	312	0.0032	22	c.175 others(41): Show c.1759+1275_1759+1296dupACACACACACACACACACACAC	MTA3	ENSG00000057935.14	transcript	ENST00000405094.2	protein_coding	16/16		INFO_REALIGN_3_PRIME	chr2	TogoVar

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