Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ARHGAP15_chr2_143124419_143773352	143320404	C C	CCCCCCCC others(15): Show CCCCCCCCGCCCCCCCCCCCCCG	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG02074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0025	1	162	0.0062	22	c.474 others(41): Show c.474+69807_474+69808insCCCCGCCCCCCCCCCCCCGCCC	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGCGCGCG others(15): Show TGCGCGCGCGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	1	162	0.0062	22	c.475 others(41): Show c.475-21629_475-21628insGCGCGCGCGCGCGCGCGCGCGC	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGCG others(15): Show TGTGTGCGCGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02148.hp2 HG03654.hp1 others(3): Show HG02148.hp1 HG02148.hp2 HG03654.hp1 NA18612.hp2 NA18966.hp2 NA18975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0056 a0001c0001t0001g0070 a0001c0001t0001g0073 others(3): Show a0001c0001t0001g0056 a0001c0001t0001g0070 a0001c0001t0001g0073 a0001c0001t0001g0075 a0001c0001t0001g0149 a0001c0001t0001g0152	6	162	0.0370	22	c.475 others(41): Show c.475-21634_475-21633insTGTGCGCGCGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(15): Show TGTGTGTGCGCGCGCGCGCACGC	intron_variant intron_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0086 a0001c0001t0001g0086	1	162	0.0062	22	c.475 others(41): Show c.475-21634_475-21633insTGTGTGCGCGCGCGCGCACGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(15): Show TGTGTGTGCGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02129.hp2 NA18970.hp2 NA18986.hp2 others(1): Show HG02129.hp2 NA18970.hp2 NA18986.hp2 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0084 a0001c0001t0001g0158 others(1): Show a0001c0001t0001g0071 a0001c0001t0001g0084 a0001c0001t0001g0158 a0001c0001t0001g0159	4	162	0.0247	22	c.475 others(41): Show c.475-21634_475-21633insTGTGTGCGCGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(15): Show TGTGTGTGTGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03486.hp1 NA18947.hp2 HG03225.hp2 HG03486.hp1 NA18947.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0082 a0001c0001t0001g0092 a0001c0001t0001g0097 a0001c0001t0001g0082 a0001c0001t0001g0092 a0001c0001t0001g0097	3	162	0.0185	22	c.475 others(41): Show c.475-21634_475-21633insTGTGTGTGCGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(15): Show TGTGTGTGTGTGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01358.hp2 HG02572.hp1 others(5): Show HG00642.hp2 HG01358.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 NA18747.hp2 NA19240.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0098 others(5): Show a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0098 a0001c0001t0001g0112 a0001c0001t0001g0122 a0001c0001t0001g0140 a0001c0001t0001g0147 a0001c0001t0001g0162	8	162	0.0494	22	c.475 others(41): Show c.475-21634_475-21633insTGTGTGTGTGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143606035	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0160 a0001c0001t0001g0160	1	162	0.0062	22	c.100 others(43): Show c.1004-18084_1004-18063dupAAAAAAAAAAAAAAAAAAAAAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	11/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143656934	G G	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG03491.hp2 HG01071.hp2 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0067 a0001c0001t0001g0021 a0001c0001t0001g0067	2	162	0.0124	22	c.113 others(43): Show c.1138+32686_1138+32707dupGTGTGTGTGTGTGTGTGTGTGT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673746	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00741.hp2 NA18975.hp1 others(1): Show HG00609.hp2 HG00741.hp2 NA18975.hp1 NA19006.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0077 a0001c0001t0001g0146 a0001c0001t0001g0149 others(1): Show a0001c0001t0001g0077 a0001c0001t0001g0146 a0001c0001t0001g0149 a0001c0001t0001g0155	4	162	0.0247	22	c.113 others(43): Show c.1139-29672_1139-29671insATATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673748	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0043 a0001c0002t0001g0043	1	162	0.0062	22	c.113 others(43): Show c.1139-29670_1139-29669insATATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673756	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18953.hp2 NA18966.hp1 NA18953.hp2 NA18966.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0052 a0001c0001t0001g0087 a0001c0001t0001g0052 a0001c0001t0001g0087	2	162	0.0124	22	c.113 others(43): Show c.1139-29662_1139-29661insATATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG03942.hp1 HG04199.hp1 others(2): Show HG02129.hp2 HG03942.hp1 HG04199.hp1 NA18612.hp1 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0049 a0001c0001t0001g0069 a0001c0001t0001g0084 others(2): Show a0001c0001t0001g0049 a0001c0001t0001g0069 a0001c0001t0001g0084 a0001c0001t0001g0094 a0001c0001t0001g0154	5	162	0.0309	22	c.113 others(43): Show c.1139-29656_1139-29635dupTATATATATATATATATATATA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTGTATAT others(15): Show GTGTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18947.hp2 NA18947.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0082 a0001c0001t0001g0082	1	162	0.0062	22	c.113 others(43): Show c.1139-29660_1139-29659insGTATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTGTGTAT others(15): Show GTGTGTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	162	0.0062	22	c.113 others(43): Show c.1139-29660_1139-29659insGTGTATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673781	T T	TATATATA others(15): Show TATATATATATATATATATATAG	intron_variant intron_variant	MODIFIER	HG02300.hp2 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0064 a0001c0001t0001g0064	1	162	0.0062	22	c.113 others(43): Show c.1139-29635_1139-29634insTATATATATATATATATAGATA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP17_chr16_24914389_25020369	24950836	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	240	0.0042	22	c.104 others(41): Show c.1047-1374_1047-1353dupTTTTTTTTTTTTTTTTTTTTTT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	12/19			chr16	TogoVar
ARHGAP20_chr11_110572043_110717437	110687035	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG03139.hp2 HG03209.hp1 others(6): Show HG02922.hp1 HG03139.hp2 HG03209.hp1 HG03540.hp2 HG03579.hp1 NA18989.hp2 NA19030.hp1 NA19086.hp2 NA19240.hp1	a0001 a0002 a0006 others(1): Show a0001 a0002 a0006 a0009	a0001c0001 a0001c0002 a0002c0003 others(2): Show a0001c0001 a0001c0002 a0002c0003 a0006c0007 a0009c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0005 a0002c0003t0007 a0006c0007t0010 a0009c0015t0004	a0001c0001t0001g0170 a0001c0001t0001g0191 a0001c0001t0002g0206 others(6): Show a0001c0001t0001g0170 a0001c0001t0001g0191 a0001c0001t0002g0206 a0001c0001t0003g0213 a0001c0002t0005g0214 a0002c0003t0007g0202 a0002c0003t0007g0203 a0006c0007t0010g0148 a0009c0015t0004g0153	9	226	0.0398	22	c.188 others(39): Show c.188+3511_188+3512insATATATATATATATATATATAT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(15): Show ATATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG02895.hp2 HG00323.hp2 HG02895.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0110 a0002c0002t0001g0131 a0002c0002t0001g0110 a0002c0002t0001g0131	2	352	0.0057	22	c.495 others(39): Show c.495+1013_495+1014insAAAATATATATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(15): Show ATATATATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0089 a0004c0004t0001g0089	1	352	0.0028	22	c.495 others(39): Show c.495+1013_495+1014insAAAAAATATATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP23_chr17_38423464_38517385	38513074	T T	TTAAATAT others(15): Show TTAAATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01071.hp2 HG01106.hp1 HG02630.hp1 others(3): Show HG01071.hp2 HG01106.hp1 HG02630.hp1 NA20300.hp2 NA20752.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0016 a0001c0001 a0001c0004 a0001c0016	a0001c0001t0001 a0001c0001t0014 a0001c0004t0001 others(1): Show a0001c0001t0001 a0001c0001t0014 a0001c0004t0001 a0001c0016t0003	a0001c0001t0001g0064 a0001c0001t0001g0222 a0001c0001t0001g0305 others(3): Show a0001c0001t0001g0064 a0001c0001t0001g0222 a0001c0001t0001g0305 a0001c0001t0014g0274 a0001c0004t0001g0194 a0001c0016t0003g0301	6	309	0.0194	22	c.21 others(33): Show c.2102_*2103insTAAATATATATATATATATATA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		690		chr17	TogoVar
ARHGAP24_chr4_85470150_86007666	85655792	T T	TATATATA others(15): Show TATATATATATATATATAGAGAG	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0090 a0001c0001t0001g0090	1	108	0.0093	22	c.181 others(41): Show c.181-66092_181-66091insTATATATATATATATAGAGAGA	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85655804	G G	GAGAGAGA others(15): Show GAGAGAGAGAGAGAGAGAGAGAA	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	108	0.0093	22	c.181 others(41): Show c.181-66068_181-66067insGAGAGAGAAAGAGAGAGAGAGA	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85733060	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02486.hp2 HG03130.hp2 HG02145.hp2 HG02486.hp2 HG03130.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0006 a0001c0001 a0002c0006	a0001c0001t0005 a0002c0006t0018 a0001c0001t0005 a0002c0006t0018	a0001c0001t0005g0036 a0001c0001t0005g0101 a0002c0006t0018g0040 a0001c0001t0005g0036 a0001c0001t0005g0101 a0002c0006t0018g0040	3	108	0.0278	22	c.268 others(41): Show c.268+11109_268+11110insTTTTTTTTTTTTTTTTTTTTTT	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85813818	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0014 a0001c0008t0014	a0001c0008t0014g0063 a0001c0008t0014g0063	1	108	0.0093	22	c.268 others(41): Show c.268+91850_268+91871dupATATATATATATATATATATAT	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP26_chr5_142765377_143234007	142949190	A A	AGAGAGAG others(15): Show AGAGAGAGAGAGAGAGGAGAGAG	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG04228.hp2 HG02615.hp1 HG04228.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0007 a0001c0001 a0002c0007	a0001c0001t0003 a0002c0007t0004 a0001c0001t0003 a0002c0007t0004	a0001c0001t0003g0191 a0002c0007t0004g0110 a0001c0001t0003g0191 a0002c0007t0004g0110	2	198	0.0101	22	c.110 others(43): Show c.1107+17080_1107+17081insGAGAGAGGAGAGAGAGAGAGAG	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142949232	G G	GAGAGAGA others(15): Show GAGAGAGAGAGAGAGAGAGAGGA	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0108 a0001c0001t0005g0108	1	198	0.0051	22	c.110 others(43): Show c.1107+17107_1107+17108insAGAGAGAGAGAGAGAGAGAGGA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22			chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142949232	G G	GAGAGAGA others(15): Show GAGAGAGAGAGAGAGAGAGGAGA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0109 a0001c0001t0005g0109	1	198	0.0051	22	c.110 others(43): Show c.1107+17107_1107+17108insAGAGAGAGAGAGAGAGAGGAGA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22			chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142963194	A A	ATACATAT others(15): Show ATACATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0046 a0001c0001t0002g0046	1	198	0.0051	22	c.110 others(43): Show c.1107+31071_1107+31072insCATATATATATATATATATGTA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142963198	A A	ATATATAT others(15): Show ATATATATATATGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18944.hp1 NA18944.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0137 a0001c0002t0001g0137	1	198	0.0051	22	c.110 others(43): Show c.1107+31074_1107+31075insATATATATATGTGTGTGTGTGT	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142963198	A A	ATATATAT others(15): Show ATATATATGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0022 a0001c0001t0002g0022	1	198	0.0051	22	c.110 others(43): Show c.1107+31074_1107+31075insATATATGTGTGTGTGTGTGTGT	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	143012537	T T	TTATATAT others(15): Show TTATATATATACATATATATATA	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0002 a0001c0001t0004g0002	1	198	0.0051	22	c.110 others(41): Show c.1108-1537_1108-1536insTATACATATATATATATATATA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	143012552	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01069.hp2 HG01071.hp2 others(5): Show HG00323.hp2 HG01069.hp2 HG01071.hp2 HG01243.hp1 HG02897.hp1 HG03516.hp2 NA18954.hp1 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 a0001c0001 a0001c0003 a0001c0006	a0001c0001t0011 a0001c0001t0014 a0001c0001t0019 others(4): Show a0001c0001t0011 a0001c0001t0014 a0001c0001t0019 a0001c0001t0021 a0001c0003t0001 a0001c0003t0002 a0001c0006t0044	a0001c0001t0011g0091 a0001c0001t0014g0038 a0001c0001t0019g0010 others(5): Show a0001c0001t0011g0091 a0001c0001t0014g0038 a0001c0001t0019g0010 a0001c0001t0019g0011 a0001c0001t0021g0079 a0001c0003t0001g0021 a0001c0003t0002g0178 a0001c0006t0044g0193	8	198	0.0404	22	c.110 others(41): Show c.1108-1525_1108-1504dupATATATATATATATATATATAT	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	143012576	T T	TATATATA others(15): Show TATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	NA18950.hp2 NA18978.hp2 NA18950.hp2 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0002g0013 a0001c0002t0001g0130 a0001c0001t0002g0013 a0001c0002t0001g0130	2	198	0.0101	22	c.110 others(41): Show c.1108-1504_1108-1503insATATATATATATATATATATAA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22			chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	143167482	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0086 a0001c0001t0006g0086	1	198	0.0051	22	c.198 others(43): Show c.1988+20116_1988+20137dupAAAAAAAAAAAAAAAAAAAAAA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	20/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP28_chr18_6724716_6920716	6729574	G G	GCACACAC others(15): Show GCACACACACACACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01346.hp1 HG02615.hp1 HG03041.hp1 others(2): Show HG01346.hp1 HG02615.hp1 HG03041.hp1 HG03139.hp1 HG03471.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0006 a0008	a0001c0001 a0002c0002 a0003c0023 others(2): Show a0001c0001 a0002c0002 a0003c0023 a0006c0009 a0008c0011	a0001c0001t0001 a0002c0002t0002 a0003c0023t0001 others(2): Show a0001c0001t0001 a0002c0002t0002 a0003c0023t0001 a0006c0009t0005 a0008c0011t0005	a0001c0001t0001g0150 a0002c0002t0002g0148 a0003c0023t0001g0120 others(2): Show a0001c0001t0001g0150 a0002c0002t0002g0148 a0003c0023t0001g0120 a0006c0009t0005g0144 a0008c0011t0005g0152	5	248	0.0202	22	c.-24 others(31): Show c.-248_-247insCACACACACACACACACACACA	ARHGAP28	ENSG00000088756.13	transcript	ENST00000383472.9	protein_coding		141		chr18	TogoVar
ARHGAP28_chr18_6724716_6920716	6729574	G G	GCGCACAC others(15): Show GCGCACACACACACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0018 a0001c0018	a0001c0018t0020 a0001c0018t0020	a0001c0018t0020g0007 a0001c0018t0020g0007	1	248	0.0040	22	c.-24 others(31): Show c.-248_-247insCGCACACACACACACACACACA	ARHGAP28	ENSG00000088756.13	transcript	ENST00000383472.9	protein_coding		141		chr18	TogoVar
ARHGAP28_chr18_6724716_6920716	6730219	G G	GTATATAT others(15): Show GTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG02895.hp1 HG02897.hp1 others(2): Show HG02523.hp1 HG02895.hp1 HG02897.hp1 HG02970.hp1 HG03669.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0010 others(1): Show a0001c0001 a0001c0003 a0001c0010 a0002c0002	a0001c0001t0001 a0001c0003t0003 a0001c0010t0003 others(1): Show a0001c0001t0001 a0001c0003t0003 a0001c0010t0003 a0002c0002t0002	a0001c0001t0001g0097 a0001c0003t0003g0094 a0001c0003t0003g0095 others(2): Show a0001c0001t0001g0097 a0001c0003t0003g0094 a0001c0003t0003g0095 a0001c0010t0003g0098 a0002c0002t0002g0096	5	248	0.0202	22	c.122 others(37): Show c.122+277_122+278insATATATATATATATATATATAT	ARHGAP28	ENSG00000088756.13	transcript	ENST00000383472.9	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr18	TogoVar
ARHGAP28_chr18_6724716_6920716	6730236	T T	TATATATA others(15): Show TATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0085 a0001c0003t0003g0085	1	248	0.0040	22	c.122 others(37): Show c.122+294_122+295insTATATATATATATATATATACA	ARHGAP28	ENSG00000088756.13	transcript	ENST00000383472.9	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr18	TogoVar
ARHGAP31_chr3_119289383_119425714	119293703	A A	AGTGTGTG others(15): Show AGTGTGTGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00323.hp2 HG01071.hp2 others(12): Show HG00099.hp1 HG00323.hp2 HG01071.hp2 HG01168.hp2 HG01496.hp1 HG01943.hp2 HG02083.hp1 HG02300.hp2 HG02735.hp1 HG02970.hp1 HG04199.hp1 NA18945.hp1 NA18957.hp1 NA18987.hp2 NA19058.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0002c0003	a0001c0001t0005 a0001c0001t0006 a0001c0002t0001 others(4): Show a0001c0001t0005 a0001c0001t0006 a0001c0002t0001 a0001c0004t0003 a0001c0004t0032 a0001c0005t0048 a0002c0003t0002	a0001c0001t0005g0077 a0001c0001t0005g0078 a0001c0001t0006g0073 others(12): Show a0001c0001t0005g0077 a0001c0001t0005g0078 a0001c0001t0006g0073 a0001c0002t0001g0070 a0001c0002t0001g0074 a0001c0002t0001g0075 a0001c0002t0001g0083 a0001c0002t0001g0084 a0001c0004t0003g0007 a0001c0004t0003g0072 a0001c0004t0003g0076 a0001c0004t0032g0071 a0001c0005t0048g0304 a0002c0003t0002g0081 a0002c0003t0002g0085	15	310	0.0484	22	c.-12 others(33): Show c.-1202_-1201insGTGTGTGTGTGTGTGTGTGTGT	ARHGAP31	ENSG00000031081.11	transcript	ENST00000264245.9	protein_coding		679		chr3	TogoVar
ARHGAP31_chr3_119289383_119425714	119297909	A A	AACACACA others(15): Show AACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03471.hp2 HG03130.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0020 a0001c0004t0021 a0001c0001t0020 a0001c0004t0021	a0001c0001t0020g0056 a0001c0004t0021g0055 a0001c0001t0020g0056 a0001c0004t0021g0055	2	310	0.0065	22	c.100 others(39): Show c.100+2920_100+2941dupACACACACACACACACACACAC	ARHGAP31	ENSG00000031081.11	transcript	ENST00000264245.9	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARHGAP31_chr3_119289383_119425714	119307940	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02293.hp2 NA18945.hp2 others(8): Show HG01243.hp1 HG02293.hp2 NA18945.hp2 NA18960.hp2 NA18969.hp1 NA19000.hp2 NA19003.hp1 NA19005.hp1 NA19058.hp1 NA19087.hp1 NA19090.hp2	a0001 a0005 a0011 a0001 a0005 a0011	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0005c0008 a0011c0019	a0001c0001t0005 a0001c0001t0006 a0001c0002t0001 others(3): Show a0001c0001t0005 a0001c0001t0006 a0001c0002t0001 a0001c0004t0003 a0005c0008t0002 a0011c0019t0005	a0001c0001t0005g0111 a0001c0001t0006g0102 a0001c0001t0006g0103 others(8): Show a0001c0001t0005g0111 a0001c0001t0006g0102 a0001c0001t0006g0103 a0001c0001t0006g0104 a0001c0001t0006g0109 a0001c0002t0001g0105 a0001c0002t0001g0108 a0001c0004t0003g0110 a0005c0008t0002g0106 a0005c0008t0002g0107 a0011c0019t0005g0155	11	310	0.0355	22	c.100 others(41): Show c.100+12956_100+12957insAAAAAAAAAAAAAAAAAAAAAA	ARHGAP31	ENSG00000031081.11	transcript	ENST00000264245.9	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARHGAP31_chr3_119289383_119425714	119388306	T T	TTACATAT others(15): Show TTACATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01081.hp1 HG01192.hp2 others(8): Show HG00597.hp1 HG01081.hp1 HG01192.hp2 HG02683.hp1 HG02818.hp1 HG03490.hp2 HG03654.hp1 HG04199.hp1 NA19091.hp1 NA21309.hp1 NA21309.hp2	a0001 a0004 a0013 a0001 a0004 a0013	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0004c0007 a0013c0020	a0001c0001t0008 a0001c0001t0018 a0001c0001t0020 others(8): Show a0001c0001t0008 a0001c0001t0018 a0001c0001t0020 a0001c0001t0053 a0001c0002t0001 a0001c0002t0004 a0001c0002t0012 a0001c0002t0034 a0001c0005t0004 a0004c0007t0015 a0013c0020t0013	a0001c0001t0008g0200 a0001c0001t0018g0209 a0001c0001t0020g0043 others(8): Show a0001c0001t0008g0200 a0001c0001t0018g0209 a0001c0001t0020g0043 a0001c0001t0053g0187 a0001c0002t0001g0074 a0001c0002t0004g0236 a0001c0002t0012g0238 a0001c0002t0034g0240 a0001c0005t0004g0258 a0004c0007t0015g0162 a0013c0020t0013g0051	11	310	0.0355	22	c.683 others(39): Show c.683-2478_683-2477insACATATATATATATATATATAT	ARHGAP31	ENSG00000031081.11	transcript	ENST00000264245.9	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARHGAP32_chr11_128960060_129197325	129143072	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00609.hp1 HG00673.hp2 others(26): Show HG00423.hp1 HG00609.hp1 HG00673.hp2 HG01074.hp2 HG01167.hp2 HG01346.hp2 HG01496.hp2 HG01934.hp1 HG02027.hp2 HG02132.hp2 HG02155.hp2 HG02165.hp2 HG02523.hp1 HG02735.hp1 HG03688.hp1 HG03704.hp2 NA18612.hp1 NA18941.hp1 NA18949.hp1 NA18953.hp2 NA18961.hp2 NA18966.hp1 NA18972.hp2 NA18999.hp1 NA19054.hp2 NA19060.hp1 NA19077.hp2 NA19085.hp1 NA19088.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0016 a0002c0004 a0001c0001 a0001c0016 a0002c0004	a0001c0001t0002 a0001c0001t0004 a0001c0001t0038 others(3): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0038 a0001c0016t0014 a0002c0004t0001 a0002c0004t0032	a0001c0001t0002g0002 a0001c0001t0002g0111 a0001c0001t0002g0112 others(25): Show a0001c0001t0002g0002 a0001c0001t0002g0111 a0001c0001t0002g0112 a0001c0001t0002g0114 a0001c0001t0002g0115 a0001c0001t0002g0116 a0001c0001t0002g0120 a0001c0001t0002g0121 a0001c0001t0002g0122 a0001c0001t0002g0123 a0001c0001t0002g0124 a0001c0001t0002g0125 a0001c0001t0002g0126 a0001c0001t0002g0127 a0001c0001t0002g0128 a0001c0001t0002g0129 a0001c0001t0002g0144 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0149 a0001c0001t0002g0303 a0001c0001t0004g0138 a0001c0001t0004g0142 a0001c0001t0004g0162 a0001c0001t0038g0393 a0001c0016t0014g0189 a0002c0004t0001g0204 a0002c0004t0032g0208	29	398	0.0729	22	c.226 others(41): Show c.226-18179_226-18178insATATATATATATATATATATAT	ARHGAP32	ENSG00000134909.19	transcript	ENST00000682385.1	protein_coding	2/22			chr11	TogoVar
ARHGAP36_chrX_131053346_131094885	131077764	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0068 a0001c0001t0001g0068	1	302	0.0033	22	c.-14 others(41): Show c.-142-3739_-142-3718dupATATATATATATATATATATAT	ARHGAP36	ENSG00000147256.12	transcript	ENST00000276211.10	protein_coding	1/11		INFO_REALIGN_3_PRIME	chrX	TogoVar
ARHGAP42_chr11_100682288_100998941	100779567	T T	TATACGTA others(15): Show TATACGTATATATATACGTATAC	intron_variant intron_variant	MODIFIER	NA19070.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0081 a0001c0001t0006g0081	1	286	0.0035	22	c.250 others(39): Show c.250+9142_250+9143insTACGTATACATACGTATATATA	ARHGAP42	ENSG00000165895.19	transcript	ENST00000298815.13	protein_coding	2/23		INFO_REALIGN_3_PRIME	chr11	TogoVar
ARHGAP42_chr11_100682288_100998941	100837666	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18970.hp2 NA19054.hp2 NA18970.hp2 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0141 a0001c0001t0001g0200 a0001c0001t0001g0141 a0001c0001t0001g0200	2	286	0.0070	22	c.313 others(41): Show c.313-21878_313-21857dupTTTTTTTTTTTTTTTTTTTTTT	ARHGAP42	ENSG00000165895.19	transcript	ENST00000298815.13	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr11	TogoVar
ARHGAP42_chr11_100682288_100998941	100858117	G G	GTGTGTGT others(15): Show GTGTGTGTGTGTGTGTGTGTGTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0249 a0002c0002t0002g0249	1	286	0.0035	22	c.313 others(39): Show c.313-1430_313-1429insGTGTGTGTGTGTGTTTGTGTGT	ARHGAP42	ENSG00000165895.19	transcript	ENST00000298815.13	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr11	TogoVar
ARHGAP42_chr11_100682288_100998941	100903117	G G	GCGCACAC others(15): Show GCGCACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG02132.hp1 NA19068.hp1 HG02132.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0117 a0001c0001t0001g0134 a0001c0001t0001g0117 a0001c0001t0001g0134	2	286	0.0070	22	c.385 others(41): Show c.385-10334_385-10333insGCACACACACACACACACACAC	ARHGAP42	ENSG00000165895.19	transcript	ENST00000298815.13	protein_coding	4/23		INFO_REALIGN_3_PRIME	chr11	TogoVar
ARHGAP42_chr11_100682288_100998941	100980559	C C	CTTCTTTT others(15): Show CTTCTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG03834.hp2 HG00735.hp2 HG03834.hp2	a0002 a0005 a0002 a0005	a0002c0002 a0005c0016 a0002c0002 a0005c0016	a0002c0002t0012 a0005c0016t0012 a0002c0002t0012 a0005c0016t0012	a0002c0002t0012g0024 a0005c0016t0012g0103 a0002c0002t0012g0024 a0005c0016t0012g0103	2	286	0.0070	22	c.245 others(41): Show c.2456+1512_2456+1513insCTTTTTTTTTTTTTTTTTTTTT	ARHGAP42	ENSG00000165895.19	transcript	ENST00000298815.13	protein_coding	22/23		INFO_REALIGN_3_PRIME	chr11	TogoVar

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