Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHN2_chr7_29189775_29519328	29405164	T T	TACACACA others(15): Show TACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG02135.hp2 NA19030.hp2 HG00438.hp2 HG02135.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0003 a0001c0002t0014 a0002c0003t0004 a0001c0001t0003 a0001c0002t0014 a0002c0003t0004	a0001c0001t0003g0097 a0001c0002t0014g0067 a0002c0003t0004g0110 a0001c0001t0003g0097 a0001c0002t0014g0067 a0002c0003t0004g0110	3	232	0.0129	22	c.576 others(39): Show c.576+4373_576+4394dupACACACACACACACACACACAC	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29437597	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01167.hp1 NA18942.hp1 others(1): Show HG00438.hp1 HG01167.hp1 NA18942.hp1 NA19000.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0005 a0001c0001t0007 a0001c0002t0004 others(1): Show a0001c0001t0005 a0001c0001t0007 a0001c0002t0004 a0002c0003t0004	a0001c0001t0005g0133 a0001c0001t0007g0003 a0001c0002t0004g0199 others(1): Show a0001c0001t0005g0133 a0001c0001t0007g0003 a0001c0002t0004g0199 a0002c0003t0004g0071	4	232	0.0172	22	c.576 others(41): Show c.576+36785_576+36786insAAAAAAAAAAAAAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29442934	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01981.hp2 HG02109.hp2 others(4): Show HG01081.hp2 HG01981.hp2 HG02109.hp2 HG02735.hp1 HG02976.hp1 NA19074.hp1 NA19074.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0008 a0001c0002t0002 a0001c0002t0004 a0002c0003t0021	a0001c0001t0001g0191 a0001c0001t0003g0058 a0001c0001t0006g0020 others(4): Show a0001c0001t0001g0191 a0001c0001t0003g0058 a0001c0001t0006g0020 a0001c0001t0008g0065 a0001c0002t0002g0150 a0001c0002t0004g0095 a0002c0003t0021g0112	7	232	0.0302	22	c.577 others(41): Show c.577-37328_577-37327insTTTTTTTTTTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHP2_chr16_23750026_23763935	23759379	C C	CCTCTTTC others(15): Show CCTCTTTCTTTCTTTCTTTCTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03492.hp1 HG03492.hp2 HG03492.hp1 HG03492.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	2	392	0.0051	22	c.17 others(33): Show c.1796_*1797insCTCTTTCTTTCTTTCTTTCTTT	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		445		chr16	TogoVar
CHRDL1_chrX_110668856_110800817	110674457	C C	CCACACAC others(15): Show CCACACACACACACACACACACA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0045 a0001c0001t0035g0045	1	172	0.0058	22	c.17 others(33): Show c.1752_*1773dupTGTGTGTGTGTGTGTGTGTGTG	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	12/12	1773		chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110689061	A A	AATATACA others(15): Show AATATACATATATATAAATATAT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0011 a0001c0002t0011	a0001c0002t0011g0042 a0001c0002t0011g0042	1	172	0.0058	22	c.779 others(37): Show c.779-259_779-258insATATATTTATATATATGTATAT	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRM1_chr11_62903679_62926363	62924668	C C	CTCTATAT others(15): Show CTCTATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	420	0.0024	22	c.-35 others(33): Show c.-3530_-3529insTATATATATATATATATATAGA	CHRM1	ENSG00000168539.4	transcript	ENST00000306960.4	protein_coding		3306		chr11	TogoVar
CHRM1_chr11_62903679_62926363	62924668	C C	CTCTCTAT others(15): Show CTCTCTATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	420	0.0024	22	c.-35 others(33): Show c.-3530_-3529insTATATATATATATATATAGAGA	CHRM1	ENSG00000168539.4	transcript	ENST00000306960.4	protein_coding		3306		chr11	TogoVar
CHRM1_chr11_62903679_62926363	62924668	C C	CTCTCTCT others(15): Show CTCTCTCTCTCTCTATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03710.hp1 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	420	0.0024	22	c.-35 others(33): Show c.-3530_-3529insTATATATATAGAGAGAGAGAGA	CHRM1	ENSG00000168539.4	transcript	ENST00000306960.4	protein_coding		3306		chr11	TogoVar
CHRM2_chr7_136863652_137025213	136930898	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0318 a0001c0001t0041g0318	1	320	0.0031	22	c.-12 others(43): Show c.-124-61281_-124-61260dupAAAAAAAAAAAAAAAAAAAAAA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	137011215	G G	GTGTGTGT others(15): Show GTGTGTGTGTGTGTGTATATATA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0041 a0001c0001t0018g0041	1	320	0.0031	22	c.-46 others(39): Show c.-46-3604_-46-3603insGTGTGTGTGTGTGTATATATAT	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM3_chr1_239381568_239920450	239383054	G G	GTCTCTCT others(15): Show GTCTCTCTCTTTCTCTCTCTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp1 HG03041.hp2 HG02615.hp1 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0021 a0001c0001t0013 a0001c0001t0021	a0001c0001t0013g0085 a0001c0001t0021g0019 a0001c0001t0013g0085 a0001c0001t0021g0019	2	116	0.0172	22	c.-46 others(33): Show c.-4694_-4693insTCTCTCTCTTTCTCTCTCTCTC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		3513		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239399736	C C	CATTCTTC others(15): Show CATTCTTCTGTTGATAGACACTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp2 HG00639.hp1 others(42): Show HG00140.hp1 HG00438.hp2 HG00639.hp1 HG00738.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01515.hp2 HG02083.hp1 HG02083.hp2 HG02451.hp2 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp2 HG02818.hp2 HG02970.hp1 HG02970.hp2 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03710.hp1 HG03831.hp1 HG03927.hp2 NA18906.hp1 NA18939.hp1 NA18939.hp2 NA19000.hp1 NA19000.hp2 NA19012.hp1 NA19030.hp1 NA19043.hp1 NA19068.hp1 NA19240.hp1 NA20752.hp1 NA20752.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(20): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0020 a0001c0001t0027 a0001c0001t0028 a0001c0001t0031 a0001c0001t0043 a0001c0001t0051 a0001c0001t0059 a0003c0004t0041	a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0056 others(42): Show a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0002g0037 a0001c0001t0002g0048 a0001c0001t0002g0051 a0001c0001t0002g0059 a0001c0001t0002g0061 a0001c0001t0002g0074 a0001c0001t0003g0039 a0001c0001t0003g0047 a0001c0001t0003g0057 a0001c0001t0003g0066 a0001c0001t0003g0115 a0001c0001t0004g0016 a0001c0001t0004g0024 a0001c0001t0004g0035 a0001c0001t0004g0064 a0001c0001t0005g0041 a0001c0001t0005g0053 a0001c0001t0005g0073 a0001c0001t0006g0044 a0001c0001t0006g0065 a0001c0001t0007g0055 a0001c0001t0007g0060 a0001c0001t0008g0082 a0001c0001t0009g0038 a0001c0001t0009g0045 a0001c0001t0010g0031 a0001c0001t0010g0110 a0001c0001t0012g0028 a0001c0001t0012g0049 a0001c0001t0015g0063 a0001c0001t0017g0050 a0001c0001t0018g0042 a0001c0001t0019g0040 a0001c0001t0020g0036 a0001c0001t0027g0020 a0001c0001t0028g0017 a0001c0001t0031g0116 a0001c0001t0043g0046 a0001c0001t0051g0034 a0001c0001t0059g0062 a0003c0004t0041g0043	45	116	0.3879	22	c.-52 others(43): Show c.-521+12511_-521+12532dupTTCTTCTGTTGATAGACACTTA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239580689	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01515.hp2 HG02735.hp2 others(1): Show HG01433.hp2 HG01515.hp2 HG02735.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0010 a0001c0001t0045 others(1): Show a0001c0001t0007 a0001c0001t0010 a0001c0001t0045 a0001c0001t0050	a0001c0001t0007g0055 a0001c0001t0010g0103 a0001c0001t0045g0014 others(1): Show a0001c0001t0007g0055 a0001c0001t0010g0103 a0001c0001t0045g0014 a0001c0001t0050g0015	4	116	0.0345	22	c.-31 others(43): Show c.-313+34956_-313+34957insTATATATATATATATATATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239602110	G G	GTGTGTGT others(15): Show GTGTGTGTGTGTGTATATATATA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0109 a0001c0001t0001g0109	1	116	0.0086	22	c.-31 others(43): Show c.-312-30113_-312-30112insGTGTGTGTGTGTATATATATAT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239684748	G G	GAAAGAAA others(15): Show GAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	NA19012.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0050 a0001c0001t0017g0050	1	116	0.0086	22	c.-14 others(41): Show c.-147+6461_-147+6462insAAGAAAGAAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239684770	G G	GAAAGAAA others(15): Show GAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	116	0.0086	22	c.-14 others(41): Show c.-147+6483_-147+6484insAAGAAAGAAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239766704	T T	TATAGATA others(15): Show TATAGATATAGATATAGATATAG	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01981.hp2 HG01106.hp2 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0057 a0001c0001t0015 a0001c0001t0057	a0001c0001t0015g0033 a0001c0001t0057g0084 a0001c0001t0015g0033 a0001c0001t0057g0084	2	116	0.0172	22	c.-14 others(43): Show c.-146-60533_-146-60532insGATATAGATAGATATAGATATA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239813916	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0020 a0001c0001t0027g0020	1	116	0.0086	22	c.-14 others(43): Show c.-146-13318_-146-13317insAAAAAAAAAAAAAAAAAAAAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRNA10_chr11_3660587_3676384	3663076	A A	ATCTCATC others(15): Show ATCTCATCTCATCTCATCTCATC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0020 a0002c0002t0006g0020	1	450	0.0022	22	c.30 others(33): Show c.3030_*3031insGATGAGATGAGATGAGATGAGA	CHRNA10	ENSG00000129749.3	transcript	ENST00000250699.2	protein_coding		2510		chr11	TogoVar
CHRNA3_chr15_78590309_78625996	78620368	T T	TGCGCGGG others(15): Show TGCGCGGGGCAGGGCGACGGGCA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(44): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00609.hp2 HG00738.hp2 HG01081.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp2 HG01123.hp1 HG01168.hp2 HG01175.hp2 HG01192.hp2 HG01243.hp2 HG01257.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01515.hp1 HG01516.hp1 HG01884.hp1 HG01891.hp2 HG01978.hp2 HG02004.hp1 HG02027.hp1 HG02486.hp2 HG02698.hp2 HG02818.hp1 HG03098.hp1 HG03209.hp1 HG03239.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03710.hp2 HG04115.hp1 HG04184.hp2 HG04199.hp1 NA18612.hp1 NA18981.hp1 NA18988.hp2 NA19076.hp1 NA19091.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0004 a0001c0005 a0001c0008 others(3): Show a0001c0004 a0001c0005 a0001c0008 a0001c0015 a0001c0016 a0003c0007	a0001c0004t0001 a0001c0004t0002 a0001c0005t0004 others(7): Show a0001c0004t0001 a0001c0004t0002 a0001c0005t0004 a0001c0005t0005 a0001c0005t0018 a0001c0008t0004 a0001c0015t0017 a0001c0016t0004 a0003c0007t0004 a0003c0007t0010	a0001c0004t0001g0116 a0001c0004t0002g0134 a0001c0005t0004g0002 others(28): Show a0001c0004t0001g0116 a0001c0004t0002g0134 a0001c0005t0004g0002 a0001c0005t0004g0011 a0001c0005t0004g0035 a0001c0005t0004g0118 a0001c0005t0004g0120 a0001c0005t0004g0121 a0001c0005t0004g0122 a0001c0005t0004g0123 a0001c0005t0004g0124 a0001c0005t0004g0125 a0001c0005t0004g0127 a0001c0005t0004g0128 a0001c0005t0004g0129 a0001c0005t0004g0130 a0001c0005t0004g0135 a0001c0005t0005g0126 a0001c0005t0005g0131 a0001c0005t0005g0132 a0001c0005t0018g0119 a0001c0008t0004g0034 a0001c0008t0004g0114 a0001c0008t0004g0115 a0001c0015t0017g0133 a0001c0016t0004g0117 a0003c0007t0004g0020 a0003c0007t0004g0060 a0003c0007t0004g0062 a0003c0007t0010g0059 a0003c0007t0010g0061	47	410	0.1146	22	c.82+ others(35): Show c.82+323_82+344dupTGCCCGTCGCCCTGCCCCGCGC	CHRNA3	ENSG00000080644.16	transcript	ENST00000326828.6	protein_coding	1/5			chr15	TogoVar
CHRNA4_chr20_63338223_63366349	63359903	G G	GTGTGTGT others(15): Show GTGTGTGTGTGCCGGGCGTGCGC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00323.hp1 others(32): Show HG00140.hp1 HG00140.hp2 HG00323.hp1 HG00597.hp2 HG01081.hp2 HG01109.hp1 HG01167.hp2 HG01258.hp2 HG01346.hp1 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02040.hp1 HG02056.hp1 HG02056.hp2 HG02735.hp1 HG02735.hp2 HG03041.hp2 HG03239.hp1 HG03492.hp2 HG03669.hp2 HG03704.hp1 HG03831.hp1 HG03834.hp2 HG04184.hp1 HG04184.hp2 HG04228.hp1 NA18612.hp1 NA18945.hp2 NA19010.hp1 NA19064.hp1 NA19066.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0008 a0001c0016	a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 others(7): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 a0001c0002t0024 a0001c0002t0025 a0001c0002t0026 a0001c0005t0001 a0001c0005t0004 a0001c0008t0001 a0001c0016t0001	a0001c0001t0001g0066 a0001c0002t0001g0001 a0001c0002t0001g0010 others(25): Show a0001c0001t0001g0066 a0001c0002t0001g0001 a0001c0002t0001g0010 a0001c0002t0001g0041 a0001c0002t0001g0048 a0001c0002t0001g0052 a0001c0002t0001g0053 a0001c0002t0001g0054 a0001c0002t0001g0058 a0001c0002t0001g0060 a0001c0002t0001g0061 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0069 a0001c0002t0001g0070 a0001c0002t0001g0071 a0001c0002t0001g0076 a0001c0002t0004g0049 a0001c0002t0024g0102 a0001c0002t0025g0096 a0001c0002t0026g0067 a0001c0005t0001g0064 a0001c0005t0001g0065 a0001c0005t0004g0059 a0001c0008t0001g0009 a0001c0008t0001g0038 a0001c0016t0001g0040	35	168	0.2083	22	c.77- others(35): Show c.77-205_77-204insGCGCACGCCCGGCACACACACA	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	1/5			chr20	TogoVar
CHRNA4_chr20_63338223_63366349	63359907	G G	GTGTGTGT others(15): Show GTGTGTGTGTGCCGGGCGTGCGC	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01255.hp2	a0000 a0000	a0000c0006 a0000c0006	a0000c0006t0028 a0000c0006t0028	a0000c0006t0028g0079 a0000c0006t0028g0079	1	168	0.0060	22	c.77- others(35): Show c.77-209_77-208insGCGCACGCCCGGCACACACACA	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	1/5			chr20	TogoVar
CHRNA5_chr15_78560520_78600269	78570424	A A	ATTTTTTT others(15): Show ATTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00609.hp1 NA18942.hp2 NA18944.hp2 others(3): Show HG00609.hp1 NA18942.hp2 NA18944.hp2 NA18986.hp2 NA18999.hp1 NA19003.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0014 a0002c0002t0003g0183 a0002c0002t0003g0184 others(1): Show a0002c0002t0003g0014 a0002c0002t0003g0183 a0002c0002t0003g0184 a0002c0002t0003g0185	6	382	0.0157	22	c.106 others(39): Show c.106+4603_106+4624dupTTTTTTTTTTTTTTTTTTTTTT	CHRNA5	ENSG00000169684.13	transcript	ENST00000299565.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32098871	A A	AACACACA others(15): Show AACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18977.hp2 NA19043.hp2 NA18977.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0020 a0001c0004t0044 a0001c0001t0020 a0001c0004t0044	a0001c0001t0020g0283 a0001c0004t0044g0174 a0001c0001t0020g0283 a0001c0004t0044g0174	2	307	0.0065	22	c.196 others(39): Show c.196-2415_196-2394dupACACACACACACACACACACAC	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA7_chr15_32025515_32178018	32114059	T T	TATATATA others(15): Show TATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0008 a0001c0007t0008	a0001c0007t0008g0215 a0001c0007t0008g0215	1	307	0.0033	22	c.350 others(39): Show c.350+2161_350+2162insTATATATATATATATATATACA	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	4/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNB3_chr8_42692366_42742407	42703435	A A	AAAAAAAA others(15): Show AAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01517.hp1 HG01515.hp2 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0214 a0001c0001t0006g0215 a0001c0001t0006g0214 a0001c0001t0006g0215	2	282	0.0071	22	c.53- others(37): Show c.53-5281_53-5280insAAAAAATATATATATATATATA	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB3_chr8_42692366_42742407	42703458	A A	ATATATAT others(15): Show ATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0007 a0001c0004t0007	a0001c0004t0007g0026 a0001c0004t0007g0026	1	282	0.0036	22	c.53- others(37): Show c.53-5256_53-5255insATATATATATATATATATGTAT	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB3_chr8_42692366_42742407	42717403	A A	AAAAAAAA others(15): Show AAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG02698.hp2 HG00140.hp1 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0038 a0001c0001t0002g0197 a0001c0001t0001g0038 a0001c0001t0002g0197	2	282	0.0071	22	c.249 others(39): Show c.249+6971_249+6972insAAAAAAAAAAAAAAAAAAAGAA	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB4_chr15_78619111_78646210	78620368	T T	TGCGCGGG others(15): Show TGCGCGGGGCAGGGCGACGGGCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(46): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00323.hp1 HG00323.hp2 HG00609.hp2 HG00738.hp2 HG01081.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp2 HG01168.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01257.hp2 HG01346.hp1 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01515.hp1 HG01516.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp2 HG02004.hp1 HG02027.hp2 HG02486.hp1 HG02698.hp2 HG02818.hp2 HG03098.hp2 HG03209.hp1 HG03239.hp1 HG03654.hp2 HG03688.hp2 HG03704.hp2 HG03710.hp1 HG04115.hp1 HG04184.hp1 NA18612.hp1 NA18981.hp1 NA18988.hp1 NA19091.hp2 NA20300.hp2 NA20805.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0014 a0001c0001 a0001c0014	a0001c0001t0001 a0001c0001t0007 a0001c0001t0017 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0017 a0001c0014t0001	a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0010 others(24): Show a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0030 a0001c0001t0001g0034 a0001c0001t0001g0050 a0001c0001t0001g0058 a0001c0001t0001g0062 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0093 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0215 a0001c0001t0001g0227 a0001c0001t0007g0124 a0001c0001t0007g0129 a0001c0001t0007g0176 a0001c0001t0007g0226 a0001c0001t0017g0091 a0001c0014t0001g0100	49	416	0.1178	22	c.47 others(33): Show c.4743_*4764dupTGCCCGTCGCCCTGCCCCGCGC	CHRNB4	ENSG00000117971.12	transcript	ENST00000261751.8	protein_coding		3742		chr15	TogoVar
CHRNB4_chr15_78619111_78646210	78626341	G G	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0121 a0001c0005t0001g0121	1	416	0.0024	22	c.133 others(41): Show c.1339-1072_1339-1051dupACACACACACACACACACACAC	CHRNB4	ENSG00000117971.12	transcript	ENST00000261751.8	protein_coding	5/5			chr15	TogoVar
CHST11_chr12_104451948_104767014	104475658	T T	TTATATAT others(15): Show TTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG02155.hp1 NA19002.hp1 HG00597.hp1 HG02155.hp1 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0021 a0001c0001t0001 a0001c0001t0003 a0001c0001t0021	a0001c0001t0001g0234 a0001c0001t0003g0027 a0001c0001t0021g0197 a0001c0001t0001g0234 a0001c0001t0003g0027 a0001c0001t0021g0197	3	240	0.0125	22	c.118 others(41): Show c.118+18141_118+18162dupATATATATATATATATATATAT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104475688	A A	ATATATAT others(15): Show ATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00597.hp2 HG00735.hp2 others(14): Show HG00544.hp2 HG00597.hp2 HG00735.hp2 HG00741.hp1 HG01074.hp1 HG01496.hp1 HG02300.hp1 HG02451.hp2 HG02723.hp1 HG02970.hp2 HG03139.hp1 HG03516.hp2 HG04184.hp2 HG04204.hp1 NA18945.hp1 NA19030.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 a0001c0001t0016 a0001c0001t0029 a0001c0001t0036 a0001c0001t0038 a0001c0001t0059 a0001c0001t0062 a0001c0003t0001	a0001c0001t0001g0135 a0001c0001t0002g0083 a0001c0001t0002g0108 others(14): Show a0001c0001t0001g0135 a0001c0001t0002g0083 a0001c0001t0002g0108 a0001c0001t0002g0134 a0001c0001t0002g0154 a0001c0001t0003g0070 a0001c0001t0004g0086 a0001c0001t0006g0087 a0001c0001t0009g0085 a0001c0001t0012g0177 a0001c0001t0016g0084 a0001c0001t0029g0212 a0001c0001t0036g0180 a0001c0001t0038g0068 a0001c0001t0059g0150 a0001c0001t0062g0140 a0001c0003t0001g0115	17	240	0.0708	22	c.118 others(41): Show c.118+18162_118+18163insATATATATATATATATATTTAT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104544138	A A	AAGAAAGA others(15): Show AAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0114 a0001c0001t0001g0114	1	240	0.0042	22	c.119 others(41): Show c.119-57767_119-57766insGAAAGAAAGAAAGAAAGAAAGA	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104553568	C C	CGAGAGAG others(15): Show CGAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0115 a0001c0003t0001g0115	1	240	0.0042	22	c.119 others(41): Show c.119-48326_119-48305dupAGAGAGAGAGAGAGAGAGAGAG	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104643485	A A	ATGGTAGG others(15): Show ATGGTAGGGGCAGTGTGCCACTG	intron_variant intron_variant	MODIFIER	NA18987.hp1 NA18987.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0109 a0001c0001t0004g0109	1	240	0.0042	22	c.204 others(41): Show c.204+41496_204+41517dupGGTAGGGGCAGTGTGCCACTGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104722155	A A	AGTGTGTG others(15): Show AGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02559.hp1 HG03516.hp1 HG01243.hp1 HG02559.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0054 a0001c0001t0063 a0001c0001t0068 a0001c0001t0054 a0001c0001t0063 a0001c0001t0068	a0001c0001t0054g0003 a0001c0001t0063g0058 a0001c0001t0068g0059 a0001c0001t0054g0003 a0001c0001t0063g0058 a0001c0001t0068g0059	3	240	0.0125	22	c.205 others(41): Show c.205-34781_205-34760dupGTGTGTGTGTGTGTGTGTGTGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104750428	C C	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0184 a0001c0001t0044g0184	1	240	0.0042	22	c.205 others(39): Show c.205-6514_205-6493dupTTTTTTTTTTTTTTTTTTTTTT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST15_chr10_124002668_124098598	124045112	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG01975.hp2 HG02293.hp2 others(2): Show HG01928.hp1 HG01975.hp2 HG02293.hp2 NA18939.hp1 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0143 a0001c0001t0001g0161 a0001c0001t0002g0145 others(2): Show a0001c0001t0001g0143 a0001c0001t0001g0161 a0001c0001t0002g0145 a0001c0001t0003g0144 a0001c0001t0003g0336	5	392	0.0128	22	c.547 others(37): Show c.547-215_547-194dupTTTTTTTTTTTTTTTTTTTTTT	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	2/7			chr10	TogoVar
CHST8_chr19_33616953_33778506	33757091	G G	GAAGAGCA others(15): Show GAAGAGCACGACACGACGATGTT	intron_variant intron_variant	MODIFIER	NA19088.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0115	1	254	0.0039	22	c.131 others(41): Show c.131-14316_131-14315insACGACACGACGATGTTAAGAGC	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33757468	A A	AAGAGAGA others(15): Show AAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0001 a0001c0001t0004g0001	1	254	0.0039	22	c.131 others(41): Show c.131-13942_131-13941insGAGAGAGAGAGAGAGAGAGAGA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33757515	A A	AAGGAAGG others(15): Show AAGGAAGGAAGGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0141 a0001c0001t0001g0141	1	254	0.0039	22	c.131 others(41): Show c.131-13897_131-13896insGGAAGGAAGGAAGGAAGGAAGA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33757522	G G	GAAAGAAA others(15): Show GAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0228 a0001c0001t0001g0228	1	254	0.0039	22	c.131 others(41): Show c.131-13890_131-13889insAAGAAAGAAAGAAAGAAAGAAA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33765053	C C	CATATATA others(15): Show CATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0159 a0001c0002t0001g0159	1	254	0.0039	22	c.131 others(39): Show c.131-6340_131-6339insATATATATATATATATATATAT	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST8_chr19_33616953_33778506	33765070	A A	ATATATAT others(15): Show ATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01261.hp1 HG01433.hp1 others(3): Show HG00735.hp1 HG01261.hp1 HG01433.hp1 HG02040.hp1 HG02273.hp2 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0009 a0001c0001t0003 a0001c0001t0009	a0001c0001t0003g0110 a0001c0001t0003g0131 a0001c0001t0003g0137 others(3): Show a0001c0001t0003g0110 a0001c0001t0003g0131 a0001c0001t0003g0137 a0001c0001t0003g0237 a0001c0001t0003g0250 a0001c0001t0009g0174	6	254	0.0236	22	c.131 others(39): Show c.131-6340_131-6339insATATATATATATATATATGTAT	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHSY1_chr15_101170727_101257048	101251478	G G	GCCGCCGC others(15): Show GCCGCCGCCGCCGCCGCCGCCGC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01517.hp2 HG01517.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0054 a0001c0003t0054	a0001c0003t0054g0314 a0001c0003t0054g0314	1	422	0.0024	22	c.-23 others(29): Show c.-23_-22insGCGGCGGCGGCGGCGGCGGCGG	CHSY1	ENSG00000131873.7	transcript	ENST00000254190.4	protein_coding	1/3	23		chr15	TogoVar
CHSY3_chr5_129899465_130191634	130143756	A A	ATATATAT others(15): Show ATATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0008 a0002c0007t0008	a0002c0007t0008g0243 a0002c0007t0008g0243	1	276	0.0036	22	c.108 others(43): Show c.1087-40472_1087-40471insATATATATATATATATATGTGT	CHSY3	ENSG00000198108.4	transcript	ENST00000305031.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr5	TogoVar
CHSY3_chr5_129899465_130191634	130143820	A A	ATATATAT others(15): Show ATATATATATATATATATGTGTG	intron_variant intron_variant	MODIFIER	NA19005.hp2 NA19005.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0069 a0002c0005t0001g0069	1	276	0.0036	22	c.108 others(43): Show c.1087-40392_1087-40391insGTGTGTATATATATATATATAT	CHSY3	ENSG00000198108.4	transcript	ENST00000305031.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr5	TogoVar
CHTF18_chr16_783620_803074	795580	G G	GCGGCCCC others(15): Show GCGGCCCCGCCCCGCCCCTCCCC	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0001 a0006c0006t0001	a0006c0006t0001g0077 a0006c0006t0001g0077	1	428	0.0023	22	c.217 others(39): Show c.2176-104_2176-103insGGCCCCGCCCCGCCCCTCCCCC	CHTF18	ENSG00000127586.17	transcript	ENST00000262315.14	protein_coding	16/21		INFO_REALIGN_3_PRIME	chr16	TogoVar
CHTF18_chr16_783620_803074	795581	C C	CCGCCCCG others(15): Show CCGCCCCGCCCCGCCCCTCCCCT	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG01517.hp2 HG02004.hp2 others(1): Show HG01516.hp2 HG01517.hp2 HG02004.hp2 HG03704.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0014 a0002c0002t0001g0233 a0002c0002t0001g0014 a0002c0002t0001g0233	4	428	0.0094	22	c.217 others(39): Show c.2176-103_2176-102insGCCCCGCCCCGCCCCTCCCCTC	CHTF18	ENSG00000127586.17	transcript	ENST00000262315.14	protein_coding	16/21		INFO_REALIGN_3_PRIME	chr16	TogoVar

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