Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PAX8_chr2_113210997_113283921	113255277	G G	GGGGAGGA others(16): Show GGGGAGGAGGGAGGGGAGGAGGGA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00673.hp2 HG00741.hp1 others(26): Show HG00140.hp1 HG00673.hp2 HG00741.hp1 HG01167.hp2 HG01169.hp2 HG01255.hp1 HG01256.hp2 HG01943.hp2 HG01952.hp1 HG01975.hp2 HG02080.hp1 HG02083.hp1 HG02273.hp2 HG02300.hp1 HG03654.hp2 HG03688.hp2 HG03831.hp1 NA18612.hp1 NA18982.hp1 NA18994.hp2 NA19001.hp2 NA19010.hp1 NA19056.hp2 NA19070.hp2 NA19080.hp1 NA19088.hp1 NA19090.hp2 NA20752.hp2 NA21309.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0008 a0001c0001 a0004c0008	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0004c0008t0001	a0001c0001t0001g0036 a0001c0001t0001g0049 a0001c0001t0003g0043 others(25): Show a0001c0001t0001g0036 a0001c0001t0001g0049 a0001c0001t0003g0043 a0001c0001t0003g0062 a0001c0001t0004g0011 a0001c0001t0004g0035 a0001c0001t0004g0038 a0001c0001t0004g0039 a0001c0001t0004g0040 a0001c0001t0004g0041 a0001c0001t0004g0044 a0001c0001t0004g0046 a0001c0001t0004g0050 a0001c0001t0004g0051 a0001c0001t0004g0052 a0001c0001t0004g0053 a0001c0001t0004g0054 a0001c0001t0004g0055 a0001c0001t0004g0056 a0001c0001t0004g0058 a0001c0001t0004g0059 a0001c0001t0004g0060 a0001c0001t0004g0254 a0001c0001t0008g0042 a0001c0001t0008g0045 a0001c0001t0008g0057 a0001c0001t0008g0184 a0004c0008t0001g0048	29	300	0.0967	23	c.26- others(38): Show c.26-8359_26-8358insTCCCTCCTCCCCTCCCTCCTCCC	PAX8	ENSG00000125618.18	transcript	ENST00000429538.8	protein_coding	2/11			chr2	TogoVar
PAXX_chr9_136987422_136998976	136996524	T T	TGGAGCTT others(16): Show TGGAGCTTGGTCTCCGCCATGGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	384	0.0026	23	c.27 others(34): Show c.2719_*2720insGGAGCTTGGTCTCCGCCATGGTG	PAXX	ENSG00000148362.11	transcript	ENST00000371620.4	protein_coding		2549		chr9	TogoVar
PBK_chr8_27804624_27842817	27816366	T T	TATATATA others(16): Show TATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0060 a0002c0002t0002g0060	1	392	0.0026	23	c.595 others(40): Show c.595+4198_595+4199insTATATATATATATATATATATAT	PBK	ENSG00000168078.10	transcript	ENST00000301905.9	protein_coding	6/7			chr8	TogoVar
PBRM1_chr3_52540367_52690913	52542619	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp1 HG01993.hp1 HG02486.hp1 others(4): Show HG00735.hp1 HG01993.hp1 HG02486.hp1 NA19010.hp2 NA19056.hp1 NA19065.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0001 a0001c0001t0002 a0001c0001t0005	a0001c0001t0001g0129 a0001c0001t0002g0012 a0001c0001t0002g0014 others(4): Show a0001c0001t0001g0129 a0001c0001t0002g0012 a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0048 a0001c0001t0005g0144	7	300	0.0233	23	c.54 others(34): Show c.5421_*5443dupTTTTTTTTTTTTTTTTTTTTTTT	PBRM1	ENSG00000163939.19	transcript	ENST00000707071.1	protein_coding		2747		chr3	TogoVar
PBRM1_chr3_52540367_52690913	52612258	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0253 a0001c0003t0001g0253	1	300	0.0033	23	c.197 others(42): Show c.1970-2326_1970-2304dupTTTTTTTTTTTTTTTTTTTTTTT	PBRM1	ENSG00000163939.19	transcript	ENST00000707071.1	protein_coding	17/31			chr3	TogoVar
PBRM1_chr3_52540367_52690913	52636757	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00558.hp1 NA18961.hp1 NA18999.hp1 others(2): Show HG00558.hp1 NA18961.hp1 NA18999.hp1 NA19006.hp1 NA19065.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0195 a0001c0002t0001g0226 a0001c0002t0001g0227 others(2): Show a0001c0002t0001g0195 a0001c0002t0001g0226 a0001c0002t0001g0227 a0001c0002t0001g0228 a0001c0002t0001g0249	5	300	0.0167	23	c.108 others(42): Show c.1088-1965_1088-1943dupTTTTTTTTTTTTTTTTTTTTTTT	PBRM1	ENSG00000163939.19	transcript	ENST00000707071.1	protein_coding	11/31			chr3	TogoVar
PBRM1_chr3_52540367_52690913	52637773	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01934.hp1 NA18944.hp2 others(3): Show HG01123.hp2 HG01934.hp1 NA18944.hp2 NA18949.hp2 NA18977.hp2 NA18995.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0003 a0001c0002t0009 a0001c0002t0001 a0001c0002t0003 a0001c0002t0009	a0001c0002t0001g0157 a0001c0002t0001g0169 a0001c0002t0001g0188 others(3): Show a0001c0002t0001g0157 a0001c0002t0001g0169 a0001c0002t0001g0188 a0001c0002t0001g0225 a0001c0002t0003g0213 a0001c0002t0009g0299	6	300	0.0200	23	c.108 others(42): Show c.1088-2981_1088-2959dupTTTTTTTTTTTTTTTTTTTTTTT	PBRM1	ENSG00000163939.19	transcript	ENST00000707071.1	protein_coding	11/31			chr3	TogoVar
PBX3_chr9_125742373_125972377	125793366	A A	AAAAAAAT others(16): Show AAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0292 a0001c0001t0001g0292	1	294	0.0034	23	c.274 others(42): Show c.274+44744_274+44745insAAAAATATATATATATATATATA	PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
PBX3_chr9_125742373_125972377	125943352	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19060.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0213 a0001c0001t0001g0213	1	294	0.0034	23	c.843 others(40): Show c.843+7770_843+7792dupAAAAAAAAAAAAAAAAAAAAAAA	PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
PCBP3_chr21_45638725_45947450	45646093	C C	CTCTCTCT others(16): Show CTCTCTCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0231 a0001c0001t0002g0231	1	292	0.0034	23	c.-27 others(42): Show c.-279+2240_-279+2241insCTCTCTCTTCTCTCTCTCTCTCT	PCBP3	ENSG00000183570.17	transcript	ENST00000681687.1	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr21	TogoVar
PCCA_chr13_100084093_100535435	100348802	T T	TTTCTCTC others(16): Show TTTCTCTCTCTTTTTCTCTTTCTC	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00738.hp1 HG01099.hp1 others(3): Show HG00408.hp2 HG00738.hp1 HG01099.hp1 HG02300.hp1 HG02615.hp2 NA18959.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0097 others(3): Show a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0097 a0001c0001t0001g0134 a0001c0001t0001g0158 a0001c0001t0001g0168	6	174	0.0345	23	c.164 others(42): Show c.1643+8543_1643+8544insTTCTCTCTCTTTTTCTCTTTCTC	PCCA	ENSG00000175198.17	transcript	ENST00000376285.6	protein_coding	18/23			chr13	TogoVar
PCCA_chr13_100084093_100535435	100469211	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0168 a0001c0001t0001g0168	1	174	0.0058	23	c.189 others(44): Show c.1899+19922_1899+19923insAAAAAAAAAAAAAAAAAAAAAAA	PCCA	ENSG00000175198.17	transcript	ENST00000376285.6	protein_coding	21/23		INFO_REALIGN_3_PRIME	chr13	TogoVar
PCDH11X_chrX_91774375_92628230	92009700	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02129.hp1 HG02129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0027 a0001c0001t0003g0027	1	154	0.0065	23	c.303 others(46): Show c.3033+130448_3033+130449insTTTTTTTTTTTTTTTTTTTTTT T	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92111219	T T	TAAAAAAA others(16): Show TAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03225.hp1 NA18961.hp1 HG03195.hp1 HG03225.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0008 a0001c0002t0006 a0001c0001t0003 a0001c0001t0008 a0001c0002t0006	a0001c0001t0003g0119 a0001c0001t0008g0058 a0001c0002t0006g0007 a0001c0001t0003g0119 a0001c0001t0008g0058 a0001c0002t0006g0007	3	154	0.0195	23	c.303 others(44): Show c.3034-90146_3034-90124dupAAAAAAAAAAAAAAAAAAAAAAA	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92326622	C C	CTATATAT others(16): Show CTATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG03098.hp1 NA18962.hp1 others(1): Show HG02135.hp1 HG03098.hp1 NA18962.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0001c0010t0001	a0001c0001t0002g0028 a0001c0001t0003g0092 a0001c0001t0010g0150 others(1): Show a0001c0001t0002g0028 a0001c0001t0003g0092 a0001c0001t0010g0150 a0001c0010t0001g0105	4	154	0.0260	23	c.314 others(44): Show c.3145-61095_3145-61094insTATAATATATATATATATATATA	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	8/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92326625	T T	TATATATA others(16): Show TATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0147 a0001c0001t0011g0147	1	154	0.0065	23	c.314 others(44): Show c.3145-61095_3145-61094insTATATATAATATATATATATATA	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	8/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11Y_chrY_4995296_5747224	5373126	C C	CCCTCCCT others(16): Show CCCTCCCTCCTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0011	1	115	0.0087	23	c.285 others(46): Show c.2854-127930_2854-127929insCTCCCTCCTTCTTTCTTTCTTT C	PCDH11Y	ENSG00000099715.15	transcript	ENST00000698851.1	protein_coding	3/5		INFO_REALIGN_3_PRIME	chrY	TogoVar
PCDH15_chr10_53797771_54806231	53888702	T T	TATATATA others(16): Show TATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02027.hp1 HG01081.hp2 HG02027.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0002 a0002c0002t0001 a0002c0002t0002	a0002c0002t0001g0093 a0002c0002t0002g0063 a0002c0002t0001g0093 a0002c0002t0002g0063	2	102	0.0196	23	c.350 others(44): Show c.3501+14540_3501+14541insTATATATATATATATATATATAT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	26/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54296144	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01934.hp1 HG02922.hp2 HG01884.hp1 HG01934.hp1 HG02922.hp2	a0001 a0013 a0001 a0013	a0001c0001 a0013c0015 a0001c0001 a0013c0015	a0001c0001t0001 a0013c0015t0001 a0001c0001t0001 a0013c0015t0001	a0001c0001t0001g0014 a0001c0001t0001g0043 a0013c0015t0001g0029 a0001c0001t0001g0014 a0001c0001t0001g0043 a0013c0015t0001g0029	3	102	0.0294	23	c.876 others(42): Show c.876+21104_876+21126dupTTTTTTTTTTTTTTTTTTTTTTT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	8/37			chr10	TogoVar
PCDH15_chr10_53816099_54806231	53888702	T T	TATATATA others(16): Show TATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02027.hp1 HG01081.hp1 HG02027.hp1	a0002 a0002	a0002c0002 a0002c0006 a0002c0002 a0002c0006	a0002c0002t0001 a0002c0006t0001 a0002c0002t0001 a0002c0006t0001	a0002c0002t0001g0085 a0002c0006t0001g0059 a0002c0002t0001g0085 a0002c0006t0001g0059	2	94	0.0213	23	c.350 others(44): Show c.3501+14540_3501+14541insTATATATATATATATATATATAT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	26/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54296144	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01934.hp1 HG02922.hp2 HG01884.hp1 HG01934.hp1 HG02922.hp2	a0001 a0013 a0001 a0013	a0001c0001 a0013c0017 a0001c0001 a0013c0017	a0001c0001t0001 a0013c0017t0001 a0001c0001t0001 a0013c0017t0001	a0001c0001t0001g0014 a0001c0001t0001g0040 a0013c0017t0001g0026 a0001c0001t0001g0014 a0001c0001t0001g0040 a0013c0017t0001g0026	3	94	0.0319	23	c.876 others(42): Show c.876+21104_876+21126dupTTTTTTTTTTTTTTTTTTTTTTT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	8/32			chr10	TogoVar
PCDH17_chr13_57626744_57734311	57732708	A A	AATAATCT others(16): Show AATAATCTGCTTTGAGATAAGATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01069.hp2 HG01069.hp2	a0005 a0005	a0005c0014 a0005c0014	a0005c0014t0006 a0005c0014t0006	a0005c0014t0006g0160 a0005c0014t0006g0160	1	310	0.0032	23	c.74 others(34): Show c.7414_*7415insATAATCTGCTTTGAGATAAGATT	PCDH17	ENSG00000118946.12	transcript	ENST00000377918.8	protein_coding		3398		chr13	TogoVar
PCDH19_chrX_100286644_100415273	100322865	A A	ATATATAT others(16): Show ATATATATATATATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0110 a0001c0001t0002g0110	1	281	0.0036	23	c.284 others(44): Show c.2848+19037_2848+19038insAAAAAAAAAAATATATATATATA	PCDH19	ENSG00000165194.15	transcript	ENST00000373034.8	protein_coding	5/5			chrX	TogoVar
PCDH19_chrX_100286644_100415273	100379347	A A	ACACACAC others(16): Show ACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18969.hp1 NA19007.hp1 NA18969.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0161 a0001c0001t0001g0162	2	281	0.0071	23	c.261 others(44): Show c.2616+23176_2616+23177insGTGTGTGTGTGTGTGTGTGTGTG	PCDH19	ENSG00000165194.15	transcript	ENST00000373034.8	protein_coding	3/5			chrX	TogoVar
PCDH1_chr5_141848090_141883410	141850526	T T	TGGGGGGG others(16): Show TGGGGGGGGGTGGGGGTGGGGGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01361.hp1 HG02145.hp1 HG01361.hp1 HG02145.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0001c0002 a0002c0003	a0001c0002t0001 a0002c0003t0003 a0001c0002t0001 a0002c0003t0003	a0001c0002t0001g0135 a0002c0003t0003g0291 a0001c0002t0001g0135 a0002c0003t0003g0291	2	384	0.0052	23	c.35 others(34): Show c.3515_*3516insCACCCCCACCCCCACCCCCCCCC	PCDH1	ENSG00000156453.14	transcript	ENST00000287008.8	protein_coding		2563		chr5	TogoVar
PCDH7_chr4_30715369_31151800	31056458	G G	GAAAAAGA others(16): Show GAAAAAGAAAGAAGGAAAGAAAGA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG02698.hp2 HG03834.hp2 others(3): Show HG00738.hp1 HG02698.hp2 HG03834.hp2 NA18957.hp1 NA19009.hp2 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 a0001c0001t0028 a0001c0002t0004	a0001c0001t0001g0093 a0001c0001t0004g0047 a0001c0001t0004g0076 others(3): Show a0001c0001t0001g0093 a0001c0001t0004g0047 a0001c0001t0004g0076 a0001c0001t0009g0171 a0001c0001t0028g0023 a0001c0002t0004g0123	6	214	0.0280	23	c.339 others(44): Show c.3392-86013_3392-86012insAAAGAAAGAAGGAAAGAAAGAAA	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
PCDHA10_chr5_140850897_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0019 a0019	a0019c0016 a0019c0016	a0019c0016t0001 a0019c0016t0001	a0019c0016t0001g0043 a0019c0016t0001g0043	1	260	0.0039	23	c.238 others(44): Show c.2389-37756_2389-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA10_chr5_140850897_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0030 a0003c0003t0002g0030	1	260	0.0039	23	c.238 others(44): Show c.2389-37740_2389-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0249 a0001c0001t0001g0249	1	260	0.0039	23	c.239 others(44): Show c.2392-37756_2392-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0002 a0001c0011t0002	a0001c0011t0002g0123 a0001c0011t0002g0123	1	260	0.0039	23	c.239 others(44): Show c.2392-37740_2392-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0227 a0001c0001t0001g0227	1	260	0.0039	23	c.236 others(44): Show c.2368-37756_2368-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0014 a0014	a0014c0014 a0014c0014	a0014c0014t0002 a0014c0014t0002	a0014c0014t0002g0114 a0014c0014t0002g0114	1	260	0.0039	23	c.236 others(44): Show c.2368-37740_2368-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0257 a0001c0001t0001g0257	1	260	0.0039	23	c.239 others(44): Show c.2395-37756_2395-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0254 a0001c0001t0002g0254	1	260	0.0039	23	c.239 others(44): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	200	0.0050	23	c.239 others(44): Show c.2395-37756_2395-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0195 a0002c0002t0002g0195	1	200	0.0050	23	c.239 others(44): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0089	1	202	0.0050	23	c.238 others(44): Show c.2389-37756_2389-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0007 a0007	a0007c0012 a0007c0012	a0007c0012t0002 a0007c0012t0002	a0007c0012t0002g0076 a0007c0012t0002g0076	1	202	0.0050	23	c.238 others(44): Show c.2389-37740_2389-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	208	0.0048	23	c.239 others(44): Show c.2395-37756_2395-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0008 a0008	a0008c0009 a0008c0009	a0008c0009t0006 a0008c0009t0006	a0008c0009t0006g0200 a0008c0009t0006g0200	1	208	0.0048	23	c.239 others(44): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0003 a0003c0003t0001g0003	1	212	0.0047	23	c.238 others(44): Show c.2386-37756_2386-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0006 a0004c0004t0006	a0004c0004t0006g0101 a0004c0004t0006g0101	1	212	0.0047	23	c.238 others(44): Show c.2386-37740_2386-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0204 a0001c0001t0001g0204	1	220	0.0046	23	c.235 others(44): Show c.2353-37756_2353-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0013 a0003c0003t0013	a0003c0003t0013g0112 a0003c0003t0013g0112	1	220	0.0046	23	c.235 others(44): Show c.2353-37740_2353-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0012 a0002c0003t0001g0012	1	236	0.0042	23	c.239 others(44): Show c.2395-37756_2395-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0134 a0003c0004t0002g0134	1	236	0.0042	23	c.239 others(44): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0002 a0002	a0002c0020 a0002c0020	a0002c0020t0001 a0002c0020t0001	a0002c0020t0001g0119 a0002c0020t0001g0119	1	248	0.0040	23	c.235 others(44): Show c.2356-37756_2356-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0146 a0001c0003t0002g0146	1	248	0.0040	23	c.235 others(44): Show c.2356-37740_2356-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140941191	T T	TTTCTTTC others(16): Show TTTCTTTCTTCCTTTCTTCCTTTC	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0026 a0003c0003t0001g0026	1	258	0.0039	23	c.239 others(44): Show c.2395-37756_2395-37755insCTTTCTTCCTTTCTTCCTTTCTT	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140941204	T T	TTTCTTCC others(16): Show TTTCTTCCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0002 a0006c0006t0002	a0006c0006t0002g0245 a0006c0006t0002g0245	1	258	0.0039	23	c.239 others(44): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTCTT	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar

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