Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TBX2_chr17_61394843_61414466	61402971	A A	AGAGAGAG others(16): Show AGAGAGAGAGAGAGGGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01934.hp2 NA19011.hp2 HG01934.hp2 NA19011.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0004 a0001c0003 a0002c0004	a0001c0003t0005 a0002c0004t0005 a0001c0003t0005 a0002c0004t0005	a0001c0003t0005g0056 a0002c0004t0005g0056 a0001c0003t0005g0056 a0002c0004t0005g0056	2	438	0.0046	23	c.664 others(36): Show c.664-90_664-89insGAGAGAGAGAGAGGGAGAGAGAG	TBX2	ENSG00000121068.14	transcript	ENST00000240328.4	protein_coding	2/6			chr17	TogoVar
TBX3_chr12_114665255_114689175	114675387	A A	AACACCAG others(16): Show AACACCAGTACTCAGTTGAACCGT	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0173 a0001c0001t0003g0173	1	436	0.0023	23	c.104 others(40): Show c.1040-553_1040-552insACGGTTCAACTGAGTACTGGTGT	TBX3	ENSG00000135111.16	transcript	ENST00000349155.7	protein_coding	5/6			chr12	TogoVar
TBX3_chr12_114665255_114689175	114681480	T T	TGCCCATG others(16): Show TGCCCATGTCTTTTTCTGTGGGTA	intron_variant intron_variant	MODIFIER	NA18965.hp1 NA18965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0128 a0001c0001t0006g0128	1	436	0.0023	23	c.390 others(38): Show c.390-357_390-335dupTACCCACAGAAAAAGACATGGGC	TBX3	ENSG00000135111.16	transcript	ENST00000349155.7	protein_coding	1/6			chr12	TogoVar
TBXAS1_chr7_139824264_140025293	140002538	C C	CAACTGCT others(16): Show CAACTGCTGGGTGGACCAGCCAGT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03225.hp1 HG03098.hp2 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0024 a0001c0001t0001g0002 a0001c0001t0001g0024	2	270	0.0074	23	c.113 others(42): Show c.1135-4552_1135-4530dupAACTGCTGGGTGGACCAGCCAGT	TBXAS1	ENSG00000059377.19	transcript	ENST00000448866.7	protein_coding	9/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
TCEA1_chr8_53961556_54027448	53996903	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0158 a0001c0001t0002g0158	1	314	0.0032	23	c.232 others(40): Show c.232+3041_232+3042insAAAAAAAAAAAAAAAAAAAAAAA	TCEA1	ENSG00000187735.16	transcript	ENST00000521604.7	protein_coding	3/9			chr8	TogoVar
TCERG1L_chr10_131087391_131316721	131291401	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0283 a0001c0001t0005g0283	1	324	0.0031	23	c.670 others(42): Show c.670+16787_670+16809dupAAAAAAAAAAAAAAAAAAAAAAA	TCERG1L	ENSG00000176769.9	transcript	ENST00000368642.4	protein_coding	3/11			chr10	TogoVar
TCERG1_chr5_146442333_146516961	146472728	T T	TGTGTGTG others(16): Show TGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0222 a0001c0001t0001g0222	1	320	0.0031	23	c.160 others(42): Show c.1601+1152_1601+1153insGTGTGTGTGTGTGTGTGTGTGTG	TCERG1	ENSG00000113649.14	transcript	ENST00000679501.2	protein_coding	9/22			chr5	TogoVar
TCERG1_chr5_146442333_146516961	146513570	T T	TTATGTCA others(16): Show TTATGTCATTATACTTATACATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0234 a0001c0001t0004g0234	1	320	0.0031	23	c.29 others(34): Show c.2928_*2929insTATGTCATTATACTTATACATTA	TCERG1	ENSG00000113649.14	transcript	ENST00000679501.2	protein_coding		1610		chr5	TogoVar
TCF12_chr15_56913644_57294853	56984014	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01261.hp2 HG01346.hp1 others(2): Show HG01074.hp1 HG01261.hp2 HG01346.hp1 HG01943.hp2 HG02300.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0004 a0002c0003t0010 a0002c0003t0004 a0002c0003t0010	a0002c0003t0004g0278 a0002c0003t0004g0285 a0002c0003t0010g0233 others(2): Show a0002c0003t0004g0278 a0002c0003t0004g0285 a0002c0003t0010g0233 a0002c0003t0010g0283 a0002c0003t0010g0284	5	330	0.0152	23	c.148 others(42): Show c.148+62918_148+62919insAAAAAAAAAAAAAAAAAAAAGAA	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57064795	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0004 a0002c0003t0004	a0002c0003t0004g0273 a0002c0003t0004g0273	1	330	0.0030	23	c.222 others(38): Show c.222+990_222+991insAAAAAAAAAAAAAAAAAAAAAAA	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57208380	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02055.hp1 HG02615.hp2 others(3): Show HG01891.hp1 HG02055.hp1 HG02615.hp2 HG03239.hp1 HG06807.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0058 others(3): Show a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0105 a0001c0001t0008g0310 a0001c0001t0008g0311	6	330	0.0182	23	c.579 others(42): Show c.579+10574_579+10575insTTTTTTTTTTTTTTTTTTTTTTT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	8/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57264195	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG03540.hp1 HG03942.hp1 others(1): Show HG02559.hp2 HG03540.hp1 HG03942.hp1 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0012 a0001c0001t0001 a0001c0001t0012	a0001c0001t0001g0076 a0001c0001t0001g0100 a0001c0001t0001g0308 others(1): Show a0001c0001t0001g0076 a0001c0001t0001g0100 a0001c0001t0001g0308 a0001c0001t0012g0104	4	330	0.0121	23	c.174 others(40): Show c.1745+922_1745+944dupTTTTTTTTTTTTTTTTTTTTTTT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	18/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF20_chr22_42155013_42275653	42219355	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG02976.hp2 NA18747.hp2 others(1): Show HG00099.hp1 HG02976.hp2 NA18747.hp2 NA18966.hp1	a0001 a0010 a0001 a0010	a0001c0001 a0010c0014 a0001c0001 a0010c0014	a0001c0001t0001 a0001c0001t0013 a0010c0014t0001 a0001c0001t0001 a0001c0001t0013 a0010c0014t0001	a0001c0001t0001g0134 a0001c0001t0001g0179 a0001c0001t0013g0114 others(1): Show a0001c0001t0001g0134 a0001c0001t0001g0179 a0001c0001t0013g0114 a0010c0014t0001g0352	4	355	0.0113	23	c.-36 others(40): Show c.-36-4037_-36-4015dupTTTTTTTTTTTTTTTTTTTTTTT	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF20_chr22_42155013_42275653	42243310	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG02451.hp2 NA18906.hp1 HG02451.hp2 NA18906.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0002 a0004c0005t0002	a0004c0005t0002g0236 a0004c0005t0002g0240 a0004c0005t0002g0236 a0004c0005t0002g0240	2	355	0.0056	23	c.-37 others(42): Show c.-37+27028_-37+27029insGTTTTTTTTTTTTTTTTTTTTTT	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF20_chr22_42155013_42275653	42243310	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAACAAAAC	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0002 a0004c0005t0002	a0004c0005t0002g0242 a0004c0005t0002g0242	1	355	0.0028	23	c.-37 others(42): Show c.-37+27028_-37+27029insGTTTTGTTTTTTTTTTTTTTTTT	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF25_chr16_89868592_89916379	89869045	A A	ACATATAT others(16): Show ACATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02165.hp2 NA18943.hp1 HG02165.hp2 NA18943.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0021 a0001c0002t0001g0049 a0001c0002t0001g0021 a0001c0002t0001g0049	2	300	0.0067	23	c.-46 others(34): Show c.-4623_-4622insCATATATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4546		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAAAT others(16): Show AAAAAAATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0117 a0001c0001t0001g0117	1	300	0.0033	23	c.-46 others(34): Show c.-4615_-4614insAAAAAATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAATAT others(16): Show AAAAATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG01358.hp2 HG02970.hp1 HG00735.hp2 HG01358.hp2 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0002 a0001c0001t0001 a0001c0004t0002	a0001c0001t0001g0075 a0001c0001t0001g0090 a0001c0004t0002g0059 a0001c0001t0001g0075 a0001c0001t0001g0090 a0001c0004t0002g0059	3	300	0.0100	23	c.-46 others(34): Show c.-4615_-4614insAAAATATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF3_chr19_1604292_1657615	1629321	C C	CGCACAGG others(16): Show CGCACAGGCCCCTGGGTTCCCCTG	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG02451.hp1 HG02896.hp1 HG01106.hp2 HG02451.hp1 HG02896.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0004c0014 a0001c0002 a0004c0014	a0001c0002t0085 a0004c0014t0013 a0004c0014t0079 a0001c0002t0085 a0004c0014t0013 a0004c0014t0079	a0001c0002t0085g0304 a0004c0014t0013g0288 a0004c0014t0079g0305 a0001c0002t0085g0304 a0004c0014t0013g0288 a0004c0014t0079g0305	3	352	0.0085	23	c.299 others(40): Show c.299-1896_299-1895insCAGGGGAACCCAGGGGCCTGTGC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(16): Show CTTCTTCTTCTTCTTCTTCTTTTA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0058 a0001c0002t0058	a0001c0002t0058g0283 a0001c0002t0058g0283	1	352	0.0028	23	c.-27 others(34): Show c.-2737_-2736insTAAAAGAAGAAGAAGAAGAAGAA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2382		chr19	TogoVar
TCF4_chr18_55217185_55593192	55424532	T T	TAAAACAA others(16): Show TAAAACAAAACAAACAAAAAGCAC	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0025 a0001c0001t0010g0025	1	122	0.0082	23	c.305 others(42): Show c.305-21037_305-21015dupGTGCTTTTTGTTTGTTTTGTTTT	TCF4	ENSG00000196628.20	transcript	ENST00000354452.8	protein_coding	5/19			chr18	TogoVar
TCF7L1_chr2_85128392_85315387	85173753	C C	CTTTCTTT others(16): Show CTTTCTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0017 a0002c0002t0002g0017	1	236	0.0042	23	c.441 others(42): Show c.441+39304_441+39305insTTCTTTTTTTTTTTTTTTTTTTT	TCF7L1	ENSG00000152284.5	transcript	ENST00000282111.4	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr2	TogoVar
TCFL5_chr20_62836005_62866822	62852633	A A	AGTCCACA others(16): Show AGTCCACAGAAGTATATTCACCCG	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01069.hp1 HG01071.hp2 others(8): Show HG00733.hp2 HG01069.hp1 HG01071.hp2 HG01891.hp2 HG02451.hp2 HG02622.hp2 HG02976.hp1 HG03098.hp1 HG03516.hp1 NA19240.hp1 NA20752.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0016 a0002c0002t0022 a0002c0002t0006 a0002c0002t0016 a0002c0002t0022	a0002c0002t0006g0008 a0002c0002t0006g0181 a0002c0002t0006g0183 others(2): Show a0002c0002t0006g0008 a0002c0002t0006g0181 a0002c0002t0006g0183 a0002c0002t0016g0054 a0002c0002t0022g0182	11	390	0.0282	23	c.138 others(42): Show c.1380+1360_1380+1382dupCGGGTGAATATACTTCTGTGGAC	TCFL5	ENSG00000101190.13	transcript	ENST00000335351.8	protein_coding	5/5			chr20	TogoVar
TCFL5_chr20_62836005_62866822	62853144	C C	CAGCATAG others(16): Show CAGCATAGTCACCCAGTCCACAGA	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00609.hp2 HG00621.hp1 others(39): Show HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00733.hp2 HG01069.hp1 HG01071.hp2 HG01255.hp2 HG01891.hp2 HG02040.hp2 HG02074.hp2 HG02083.hp1 HG02165.hp2 HG02451.hp2 HG02622.hp2 HG02698.hp1 HG02976.hp1 HG03098.hp1 HG03453.hp1 HG03471.hp1 HG03491.hp1 HG03516.hp1 HG03540.hp2 HG04228.hp2 NA18961.hp1 NA18964.hp2 NA18967.hp1 NA18970.hp2 NA18971.hp2 NA18973.hp1 NA18979.hp1 NA18984.hp2 NA18993.hp1 NA19002.hp2 NA19003.hp2 NA19030.hp2 NA19068.hp2 NA19070.hp1 NA19076.hp1 NA19240.hp1 NA20752.hp1 NA21309.hp1 NA21309.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0006 a0002c0002t0014 others(3): Show a0002c0002t0005 a0002c0002t0006 a0002c0002t0014 a0002c0002t0016 a0002c0002t0018 a0002c0002t0022	a0002c0002t0005g0005 a0002c0002t0005g0032 a0002c0002t0005g0033 others(23): Show a0002c0002t0005g0005 a0002c0002t0005g0032 a0002c0002t0005g0033 a0002c0002t0005g0034 a0002c0002t0005g0056 a0002c0002t0005g0057 a0002c0002t0005g0058 a0002c0002t0005g0059 a0002c0002t0005g0062 a0002c0002t0005g0063 a0002c0002t0005g0064 a0002c0002t0005g0065 a0002c0002t0005g0066 a0002c0002t0006g0008 a0002c0002t0006g0050 a0002c0002t0006g0177 a0002c0002t0006g0178 a0002c0002t0006g0179 a0002c0002t0006g0180 a0002c0002t0006g0181 a0002c0002t0006g0183 a0002c0002t0014g0060 a0002c0002t0014g0061 a0002c0002t0016g0054 a0002c0002t0018g0055 a0002c0002t0022g0182	42	390	0.1077	23	c.138 others(40): Show c.1380+871_1380+872insTCTGTGGACTGGGTGACTATGCT	TCFL5	ENSG00000101190.13	transcript	ENST00000335351.8	protein_coding	5/5			chr20	TogoVar
TCFL5_chr20_62836005_62866822	62853144	C C	CAGTATAG others(16): Show CAGTATAGTCACCCAGTCCACAGA	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00558.hp2 HG00597.hp2 others(57): Show HG00544.hp1 HG00558.hp2 HG00597.hp2 HG00621.hp2 HG00673.hp1 HG00673.hp2 HG01109.hp2 HG01256.hp1 HG01258.hp2 HG01928.hp2 HG02027.hp1 HG02040.hp1 HG02083.hp2 HG02132.hp2 HG02135.hp1 HG02155.hp2 HG02280.hp1 HG02293.hp1 HG02300.hp2 HG02615.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG03195.hp1 HG03209.hp1 HG03471.hp2 HG03579.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18941.hp2 NA18942.hp2 NA18945.hp1 NA18945.hp2 NA18948.hp1 NA18956.hp1 NA18971.hp1 NA18985.hp1 NA18986.hp2 NA18990.hp2 NA18991.hp1 NA18994.hp1 NA18998.hp1 NA19002.hp1 NA19003.hp1 NA19004.hp2 NA19007.hp2 NA19057.hp2 NA19064.hp2 NA19065.hp1 NA19066.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19077.hp1 NA19083.hp2 NA19087.hp1 NA19090.hp2 NA19240.hp2	a0001 a0009 a0001 a0009	a0001c0001 a0009c0007 a0001c0001 a0009c0007	a0001c0001t0002 a0009c0007t0023 a0001c0001t0002 a0009c0007t0023	a0001c0001t0002g0002 a0001c0001t0002g0015 a0001c0001t0002g0016 others(27): Show a0001c0001t0002g0002 a0001c0001t0002g0015 a0001c0001t0002g0016 a0001c0001t0002g0021 a0001c0001t0002g0038 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0042 a0001c0001t0002g0095 a0001c0001t0002g0096 a0001c0001t0002g0097 a0001c0001t0002g0098 a0001c0001t0002g0099 a0001c0001t0002g0100 a0001c0001t0002g0101 a0001c0001t0002g0102 a0001c0001t0002g0103 a0001c0001t0002g0104 a0001c0001t0002g0105 a0001c0001t0002g0106 a0001c0001t0002g0107 a0001c0001t0002g0108 a0001c0001t0002g0109 a0001c0001t0002g0110 a0001c0001t0002g0111 a0001c0001t0002g0112 a0001c0001t0002g0113 a0001c0001t0002g0114 a0001c0001t0002g0115 a0009c0007t0023g0116	60	390	0.1539	23	c.138 others(40): Show c.1380+871_1380+872insTCTGTGGACTGGGTGACTATACT	TCFL5	ENSG00000101190.13	transcript	ENST00000335351.8	protein_coding	5/5			chr20	TogoVar
TCL1A_chr14_95704947_95719125	95708500	A A	ATATATAT others(16): Show ATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	374	0.0027	23	c.23 others(34): Show c.2387_*2388insATATATATATATATATATATATA	TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding		1446		chr14	TogoVar
TCL1A_chr14_95704947_95719125	95708502	A A	AAAAAAAA others(16): Show AAAAAAAAATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	374	0.0027	23	c.23 others(34): Show c.2385_*2386insATATATATATATATATTTTTTTT	TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding		1444		chr14	TogoVar
TCL1A_chr14_95704947_95719125	95708502	A A	AAAAAAAT others(16): Show AAAAAAATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	374	0.0027	23	c.23 others(34): Show c.2385_*2386insATATATATATATATATATTTTTT	TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding		1444		chr14	TogoVar
TCL1A_chr14_95704947_95719125	95708502	A A	AAAAATAT others(16): Show AAAAATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	374	0.0027	23	c.23 others(34): Show c.2385_*2386insATATATATATATATATATATTTT	TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding		1444		chr14	TogoVar
TCL1A_chr14_95704947_95719125	95708502	A A	ATATATAT others(16): Show ATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	374	0.0027	23	c.23 others(34): Show c.2385_*2386insATATATATATATATATATATATA	TCL1A	ENSG00000100721.11	transcript	ENST00000402399.6	protein_coding		1444		chr14	TogoVar
TCP11L2_chr12_106297733_106352003	106349049	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0251 a0001c0001t0014g0251	1	344	0.0029	23	c.25 others(34): Show c.2519_*2520insTTTTTTTTTTTTTTTTTTTTTTT	TCP11L2	ENSG00000166046.11	transcript	ENST00000299045.8	protein_coding		2047		chr12	TogoVar
TCP11X2_chrX_102455315_102476812	102466414	A A	ATATATAT others(16): Show ATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18972.hp1 NA18972.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0026	1	137	0.0073	23	c.231 others(38): Show c.231-846_231-845insATATATATATATATATATATATA	TCP11X2	ENSG00000215029.12	transcript	ENST00000642911.3	protein_coding	3/9			chrX	TogoVar
TDO2_chr4_155898696_155925406	155909880	C C	CCTCCCCT others(16): Show CCTCCCCTCCCCTCCCCTCCCCCT	intron_variant intron_variant	MODIFIER	NA19072.hp2 NA19072.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0070 a0001c0001t0001g0070	1	377	0.0027	23	c.432 others(38): Show c.432-124_432-123insCTCTCCCCTCCCCTCCCCTCCCC	TDO2	ENSG00000151790.9	transcript	ENST00000536354.3	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
TDO2_chr4_155898696_155925406	155909882	T T	TCCCCTCC others(16): Show TCCCCTCCCCTCCCCTCCCCTCTC	intron_variant intron_variant	MODIFIER	NA18991.hp1 NA18991.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0166 a0001c0001t0001g0166	1	377	0.0027	23	c.432 others(38): Show c.432-139_432-117dupCTCCCCTCCCCTCCCCTCTCCCC	TDO2	ENSG00000151790.9	transcript	ENST00000536354.3	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
TDO2_chr4_155898696_155925406	155909904	T T	TCCCCTCC others(16): Show TCCCCTCCCCTCCCCTCCCCTCTC	intron_variant intron_variant	MODIFIER	NA18985.hp2 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0105 a0001c0001t0001g0105	1	377	0.0027	23	c.432 others(37): Show c.432-117_432-95dupCTCCCCTCCCCTCCCCTCTCCCC	TDO2	ENSG00000151790.9	transcript	ENST00000536354.3	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
TDP2_chr6_24644979_24671899	24648673	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp1 HG01069.hp1 HG01169.hp1 others(1): Show HG00323.hp1 HG01069.hp1 HG01169.hp1 NA20905.hp1	a0001 a0001	a0001c0003 a0001c0005 a0001c0003 a0001c0005	a0001c0003t0006 a0001c0005t0006 a0001c0003t0006 a0001c0005t0006	a0001c0003t0006g0035 a0001c0005t0006g0017 a0001c0005t0006g0083 a0001c0003t0006g0035 a0001c0005t0006g0017 a0001c0005t0006g0083	4	418	0.0096	23	c.21 others(34): Show c.2114_*2115insGTTTTTTTTTTTTTTTTTTTTTT	TDP2	ENSG00000111802.14	transcript	ENST00000378198.9	protein_coding		1305		chr6	TogoVar
TDRD3_chr13_60392220_60578871	60557820	A A	ATTTTTTT others(16): Show ATTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03831.hp1 NA20752.hp2 NA21309.hp2 HG03831.hp1 NA20752.hp2 NA21309.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0059 a0002c0002t0001g0076 a0002c0002t0001g0077 a0002c0002t0001g0059 a0002c0002t0001g0076 a0002c0002t0001g0077	3	272	0.0110	23	c.211 others(42): Show c.2119-9683_2119-9682insTTTTTTTTTTTTTTTTTTTTTTT	TDRD3	ENSG00000083544.16	transcript	ENST00000377881.8	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr13	TogoVar
TEAD1_chr11_12669421_12949737	12821961	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0059 a0001c0001t0002g0059	1	206	0.0049	23	c.203 others(42): Show c.203-40269_203-40268insTTTTTTTTTTTTTTTTTTTTTTT	TEAD1	ENSG00000187079.20	transcript	ENST00000527636.7	protein_coding	3/12		WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME	chr11	TogoVar
TEAD1_chr11_12669421_12949737	12908883	G G	GTTTTTGT others(16): Show GTTTTTGTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01258.hp1 HG02129.hp1 others(4): Show HG01243.hp2 HG01258.hp1 HG02129.hp1 HG02135.hp2 HG02615.hp2 NA18961.hp1 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(3): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0009 a0001c0002t0025	a0001c0001t0001g0176 a0001c0002t0001g0036 a0001c0002t0001g0110 others(4): Show a0001c0001t0001g0176 a0001c0002t0001g0036 a0001c0002t0001g0110 a0001c0002t0002g0067 a0001c0002t0005g0143 a0001c0002t0009g0123 a0001c0002t0025g0032	7	206	0.0340	23	c.873 others(40): Show c.873+6775_873+6776insGTTTTTTTTTTTTTTTTTTTTTT	TEAD1	ENSG00000187079.20	transcript	ENST00000527636.7	protein_coding	10/12		WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME	chr11	TogoVar
TECPR1_chr7_98209624_98257232	98235849	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAACAAC	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG02015.hp1 NA18947.hp2 others(1): Show HG01192.hp2 HG02015.hp1 NA18947.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0023 a0001c0001 a0001c0023	a0001c0001t0003 a0001c0001t0014 a0001c0001t0070 others(1): Show a0001c0001t0003 a0001c0001t0014 a0001c0001t0070 a0001c0023t0008	a0001c0001t0003g0088 a0001c0001t0014g0108 a0001c0001t0070g0081 others(1): Show a0001c0001t0003g0088 a0001c0001t0014g0108 a0001c0001t0070g0081 a0001c0023t0008g0315	4	346	0.0116	23	c.118 others(40): Show c.1181+926_1181+927insGTTGTTTTTTTTTTTTTTTTTTT	TECPR1	ENSG00000205356.10	transcript	ENST00000447648.7	protein_coding	10/25			chr7	TogoVar
TECPR1_chr7_98209624_98257232	98235851	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAACACAC	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0004 a0004	a0004c0032 a0004c0032	a0004c0032t0084 a0004c0032t0084	a0004c0032t0084g0207 a0004c0032t0084g0207	1	346	0.0029	23	c.118 others(40): Show c.1181+924_1181+925insGTGTGTTTTTTTTTTTTTTTTTT	TECPR1	ENSG00000205356.10	transcript	ENST00000447648.7	protein_coding	10/25			chr7	TogoVar
TECRL_chr4_64272702_64414450	64345907	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00609.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0270 a0001c0004t0001g0270	1	272	0.0037	23	c.287 others(42): Show c.287-17374_287-17352dupTTTTTTTTTTTTTTTTTTTTTTT	TECRL	ENSG00000205678.8	transcript	ENST00000381210.8	protein_coding	2/11			chr4	TogoVar
TECRL_chr4_64272702_64414450	64374038	G G	GTATATAG others(16): Show GTATATAGTAGATACATATATATA	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG02717.hp2 HG02897.hp2 others(1): Show HG02523.hp1 HG02717.hp2 HG02897.hp2 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0032 a0001c0001t0001g0117 others(1): Show a0001c0001t0001g0017 a0001c0001t0001g0032 a0001c0001t0001g0117 a0001c0001t0001g0119	4	272	0.0147	23	c.286 others(40): Show c.286+1111_286+1133dupTATATATATGTATCTACTATATA	TECRL	ENSG00000205678.8	transcript	ENST00000381210.8	protein_coding	2/11			chr4	TogoVar
TECTB_chr10_112278400_112310038	112300279	A A	AAAGAAAG others(16): Show AAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0266 a0001c0002t0001g0266	1	438	0.0023	23	c.907 others(38): Show c.907+717_907+718insGAAAGAAAGAAAGAAAGAAAGAA	TECTB	ENSG00000119913.6	transcript	ENST00000646139.2	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
TEC_chr4_48130783_48274838	48212110	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0140 a0001c0002t0004g0140	1	346	0.0029	23	c.138 others(42): Show c.138+16366_138+16367insATATATATATTTTTTTTTTTTTT	TEC	ENSG00000135605.13	transcript	ENST00000381501.8	protein_coding	2/17			chr4	TogoVar
TEKT5_chr16_10622501_10699930	10625219	G G	GTGTGCGC others(16): Show GTGTGCGCCTGCAGTTCCAGCTAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03209.hp2 HG03486.hp2 NA19030.hp2 HG03209.hp2 HG03486.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0127 a0002c0002t0001g0142 a0002c0002t0001g0297 a0001c0001t0001g0127 a0002c0002t0001g0142 a0002c0002t0001g0297	3	388	0.0077	23	c.23 others(34): Show c.2363_*2364insGTAGCTGGAACTGCAGGCGCACA	TEKT5	ENSG00000153060.8	transcript	ENST00000283025.7	protein_coding		2281		chr16	TogoVar
TEKT5_chr16_10622501_10699930	10627404	G G	GAAAGAAA others(16): Show GAAAGAAAGAAAAAGAAAGCAAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp2 HG01516.hp2 HG01517.hp2 others(7): Show HG01243.hp2 HG01516.hp2 HG01517.hp2 HG01993.hp1 HG02735.hp2 HG03490.hp1 HG03492.hp2 HG03654.hp2 HG03942.hp2 HG04184.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0003t0001 a0002c0002t0001 a0001c0001t0001 a0001c0003t0001 a0002c0002t0001	a0001c0001t0001g0024 a0001c0001t0001g0131 a0001c0003t0001g0303 others(7): Show a0001c0001t0001g0024 a0001c0001t0001g0131 a0001c0003t0001g0303 a0002c0002t0001g0202 a0002c0002t0001g0203 a0002c0002t0001g0217 a0002c0002t0001g0241 a0002c0002t0001g0242 a0002c0002t0001g0275 a0002c0002t0001g0278	10	388	0.0258	23	c.17 others(32): Show c.178_*179insTCTTGCTTTCTTTTTCTTTCTTT	TEKT5	ENSG00000153060.8	transcript	ENST00000283025.7	protein_coding		96		chr16	TogoVar
TEKTIP1_chr19_3534174_3549030	3544517	A A	AGGGGGTC others(16): Show AGGGGGTCCTTGCAAGTCCCTGGC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG00609.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	442	0.0023	23	c.50 others(32): Show c.507_*508insGGGGGTCCTTGCAAGTCCCTGGC	TEKTIP1	ENSG00000183397.6	transcript	ENST00000329493.6	protein_coding		488		chr19	TogoVar
TENM1_chrX_124370903_125209312	124390715	A A	ATACACCT others(16): Show ATACACCTTAAGAAATACTTTGCC	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0023 a0001c0002t0023	a0001c0002t0023g0057 a0001c0002t0023g0057	1	140	0.0071	23	c.568 others(42): Show c.5688+1314_5688+1336dupGGCAAAGTATTTCTTAAGGTGTA	TENM1	ENSG00000009694.14	transcript	ENST00000422452.4	protein_coding	31/34			chrX	TogoVar
TENM1_chrX_124370903_125209312	124974901	T T	TATATATA others(16): Show TATATATATAATATATATATATAA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02559.hp2 HG02818.hp2 others(1): Show HG02258.hp1 HG02559.hp2 HG02818.hp2 NA18906.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0007 a0006c0033 a0001c0001 a0001c0007 a0006c0033	a0001c0001t0009 a0001c0001t0014 a0001c0007t0001 others(1): Show a0001c0001t0009 a0001c0001t0014 a0001c0007t0001 a0006c0033t0007	a0001c0001t0009g0116 a0001c0001t0014g0087 a0001c0007t0001g0011 others(1): Show a0001c0001t0009g0116 a0001c0001t0014g0087 a0001c0007t0001g0011 a0006c0033t0007g0115	4	140	0.0286	23	c.-64 others(42): Show c.-64-11085_-64-11084insTTATATATATATATTATATATAT	TENM1	ENSG00000009694.14	transcript	ENST00000422452.4	protein_coding	3/34			chrX	TogoVar

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