Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

Sort By

Select column to sort.

Order by

Ascending or descending.

Show

Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FLNB_chr3_58003422_58177251	58100373	A A	AAAAATAT others(16): Show AAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	180	0.0056	23	c.134 others(42): Show c.1345+1466_1345+1467insAAATATATATATATATATATATA	FLNB	ENSG00000136068.16	transcript	ENST00000295956.9	protein_coding	8/45		INFO_REALIGN_3_PRIME	chr3	TogoVar
FLNB_chr3_58003422_58177251	58143979	G G	GTGGAAGA others(16): Show GTGGAAGAAGAGGACCAGCAGCCC	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp2 HG02970.hp1 HG02970.hp2	a0001 a0004 a0001 a0004	a0001c0030 a0004c0043 a0001c0030 a0004c0043	a0001c0030t0003 a0004c0043t0002 a0001c0030t0003 a0004c0043t0002	a0001c0030t0003g0128 a0004c0043t0002g0049 a0001c0030t0003g0128 a0004c0043t0002g0049	2	180	0.0111	23	c.542 others(40): Show c.5425+391_5425+413dupGGAAGAAGAGGACCAGCAGCCCT	FLNB	ENSG00000136068.16	transcript	ENST00000295956.9	protein_coding	32/45		INFO_REALIGN_3_PRIME	chr3	TogoVar
FLRT2_chr14_85525144_85659428	85558009	T T	TGTGGAAA others(16): Show TGTGGAAAGCATCCATAGACTTCC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01081.hp1 HG02451.hp2 others(3): Show HG00735.hp2 HG01081.hp1 HG02451.hp2 HG02809.hp2 HG06807.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0107 a0001c0001t0130 a0001c0001t0233 others(3): Show a0001c0001t0107 a0001c0001t0130 a0001c0001t0233 a0001c0001t0268 a0001c0001t0275 a0002c0002t0117	a0001c0001t0107g0133 a0001c0001t0130g0095 a0001c0001t0233g0096 others(3): Show a0001c0001t0107g0133 a0001c0001t0130g0095 a0001c0001t0233g0096 a0001c0001t0268g0152 a0001c0001t0275g0290 a0002c0002t0117g0149	6	338	0.0178	23	c.-37 others(44): Show c.-377+27478_-377+27500dupGGAAAGCATCCATAGACTTCCGT	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr14	TogoVar
FLRT2_chr14_85525144_85659428	85643375	C C	CTTCCTTC others(16): Show CTTCCTTCCTTCCTTTCCTTTCCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00323.hp2 HG00621.hp1 HG01175.hp1 others(13): Show HG00323.hp2 HG00621.hp1 HG01175.hp1 HG01256.hp1 HG02145.hp1 HG02723.hp1 HG03516.hp1 HG04115.hp1 HG04228.hp2 NA18522.hp1 NA18522.hp2 NA18947.hp1 NA18949.hp2 NA18961.hp1 NA18977.hp1 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0006 others(1): Show a0001c0001 a0002c0002 a0002c0006 a0002c0009	a0001c0001t0043 a0001c0001t0055 a0001c0001t0063 others(13): Show a0001c0001t0043 a0001c0001t0055 a0001c0001t0063 a0001c0001t0105 a0001c0001t0113 a0001c0001t0280 a0001c0001t0282 a0001c0001t0305 a0002c0002t0120 a0002c0002t0143 a0002c0002t0144 a0002c0002t0151 a0002c0002t0289 a0002c0006t0128 a0002c0006t0133 a0002c0009t0127	a0001c0001t0043g0048 a0001c0001t0055g0318 a0001c0001t0063g0193 others(13): Show a0001c0001t0043g0048 a0001c0001t0055g0318 a0001c0001t0063g0193 a0001c0001t0105g0195 a0001c0001t0113g0191 a0001c0001t0280g0093 a0001c0001t0282g0061 a0001c0001t0305g0179 a0002c0002t0120g0130 a0002c0002t0143g0115 a0002c0002t0144g0308 a0002c0002t0151g0116 a0002c0002t0289g0199 a0002c0006t0128g0014 a0002c0006t0133g0080 a0002c0009t0127g0073	16	338	0.0473	23	c.19 others(36): Show c.19880_*19881insCCTTCCTTCCTTTCCTTTCCTTT	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	19881	INFO_REALIGN_3_PRIME	chr14	TogoVar
FLRT3_chr20_14317985_14342612	14322201	T T	TATATATA others(16): Show TATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0013 a0001c0002t0013	a0001c0002t0013g0012 a0001c0002t0013g0012	1	430	0.0023	23	c.33 others(34): Show c.3355_*3356insTATATATATATATATATATATAT	FLRT3	ENSG00000125848.10	transcript	ENST00000341420.5	protein_coding		783		chr20	TogoVar
FLT1_chr13_28295346_28500128	28412330	T T	TTCTTTCT others(16): Show TTCTTTCTTTCTTTTCCTTCTTTC	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0178 a0001c0001t0001g0178	1	228	0.0044	23	c.143 others(42): Show c.1437-6437_1437-6436insGAAAGAAGGAAAAGAAAGAAAGA	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	10/29			chr13	TogoVar
FLT1_chr13_28295346_28500128	28412330	T T	TTTTTCTT others(16): Show TTTTTCTTTCTTTCTTTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0204 a0001c0001t0005g0204	1	228	0.0044	23	c.143 others(42): Show c.1437-6437_1437-6436insGAAAGAAAAAGAAAGAAAGAAAA	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	10/29			chr13	TogoVar
FLT4_chr5_180596506_180654600	180635491	G G	GGGTGGGT others(16): Show GGGTGGGTGGATGGATGCATGGAT	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG02027.hp1 NA18950.hp1 others(2): Show HG00741.hp2 HG02027.hp1 NA18950.hp1 NA18971.hp2 NA19080.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0004 a0002c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0004 a0002c0002t0001 a0002c0002t0004	a0001c0001t0001g0075 a0001c0001t0004g0142 a0002c0002t0001g0097 others(2): Show a0001c0001t0001g0075 a0001c0001t0004g0142 a0002c0002t0001g0097 a0002c0002t0004g0096 a0002c0002t0004g0098	5	388	0.0129	23	c.59- others(38): Show c.59-3714_59-3713insATCCATGCATCCATCCACCCACC	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	1/29			chr5	TogoVar
FLVCR1_chr1_212853275_212904363	212860350	G G	GTGTTTTT others(16): Show GTGTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19005.hp1 NA19005.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0028 a0003c0003t0028	a0003c0003t0028g0029 a0003c0003t0028g0029	1	368	0.0027	23	c.738 others(40): Show c.738+1161_738+1162insGTTTTTTTTTTTTTTTTTTTTTT	FLVCR1	ENSG00000162769.13	transcript	ENST00000366971.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
FLVCR1_chr1_212853275_212904363	212860350	G G	GTTTTTTT others(16): Show GTTTTTTTTTTGTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0101 a0003c0003t0101	a0003c0003t0101g0026 a0003c0003t0101g0026	1	368	0.0027	23	c.738 others(40): Show c.738+1170_738+1171insGTTTTTTTTTTTTTTTTTTTTTT	FLVCR1	ENSG00000162769.13	transcript	ENST00000366971.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
FLVCR1_chr1_212853275_212904363	212860350	G G	GTTTTTTT others(16): Show GTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG02132.hp2 HG02135.hp2 others(17): Show HG00738.hp1 HG02132.hp2 HG02135.hp2 HG03579.hp2 HG04199.hp1 NA18942.hp1 NA18947.hp1 NA18952.hp2 NA18973.hp1 NA18974.hp2 NA18989.hp2 NA18990.hp1 NA18994.hp2 NA18995.hp2 NA18999.hp2 NA19000.hp1 NA19066.hp2 NA19084.hp1 NA19088.hp2 NA19090.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0003 a0002c0002t0013 a0002c0002t0020 others(12): Show a0002c0002t0003 a0002c0002t0013 a0002c0002t0020 a0002c0002t0021 a0002c0002t0032 a0002c0002t0043 a0002c0002t0044 a0002c0002t0117 a0003c0003t0028 a0003c0003t0030 a0003c0003t0031 a0003c0003t0046 a0003c0003t0103 a0003c0003t0114 a0003c0003t0116	a0002c0002t0003g0131 a0002c0002t0013g0132 a0002c0002t0020g0162 others(15): Show a0002c0002t0003g0131 a0002c0002t0013g0132 a0002c0002t0020g0162 a0002c0002t0021g0018 a0002c0002t0021g0161 a0002c0002t0032g0127 a0002c0002t0043g0159 a0002c0002t0044g0160 a0002c0002t0117g0126 a0003c0003t0028g0128 a0003c0003t0030g0129 a0003c0003t0030g0130 a0003c0003t0031g0017 a0003c0003t0031g0135 a0003c0003t0046g0027 a0003c0003t0103g0134 a0003c0003t0114g0136 a0003c0003t0116g0133	20	368	0.0544	23	c.738 others(40): Show c.738+1178_738+1179insTTTTTTTTTTTTTTTTTTTTTTT	FLVCR1	ENSG00000162769.13	transcript	ENST00000366971.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
FLVCR1_chr1_212853275_212904363	212896855	T T	TAAAAAAA others(16): Show TAAAAAAAAAAAAAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0053 a0001c0001t0053	a0001c0001t0053g0206 a0001c0001t0053g0206	1	368	0.0027	23	c.15 others(34): Show c.1576_*1598dupAAAAAAAAAAAAAAAAAAAAAAA	FLVCR1	ENSG00000162769.13	transcript	ENST00000366971.9	protein_coding	10/10	1599	INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN1_chr15_32760544_33199714	33129002	T T	TTTTACAG others(16): Show TTTTACAGAGTGCTGATTGGTCCA	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0040 a0040	a0040c0057 a0040c0057	a0040c0057t0053 a0040c0057t0053	a0040c0057t0053g0042 a0040c0057t0053g0042	1	196	0.0051	23	c.186 others(44): Show c.1867+24045_1867+24046insTGGACCAATCAGCACTCTGTAAA	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	4/20			chr15	TogoVar
FMN2_chr1_240086883_240480187	240228303	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01433.hp2 HG01123.hp1 HG01433.hp2	a0001 a0094 a0001 a0094	a0001c0001 a0094c0040 a0001c0001 a0094c0040	a0001c0001t0002 a0094c0040t0001 a0001c0001t0002 a0094c0040t0001	a0001c0001t0002g0102 a0094c0040t0001g0032 a0001c0001t0002g0102 a0094c0040t0001g0032	2	174	0.0115	23	c.406 others(44): Show c.4065+17075_4065+17097dupAAAAAAAAAAAAAAAAAAAAAAA	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240252953	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01884.hp2 HG01928.hp1 others(3): Show HG01069.hp2 HG01884.hp2 HG01928.hp1 HG03688.hp1 NA19030.hp2 NA20129.hp1	a0002 a0006 a0033 others(2): Show a0002 a0006 a0033 a0065 a0079	a0002c0008 a0006c0023 a0033c0084 others(2): Show a0002c0008 a0006c0023 a0033c0084 a0065c0112 a0079c0034	a0002c0008t0003 a0006c0023t0001 a0033c0084t0002 others(2): Show a0002c0008t0003 a0006c0023t0001 a0033c0084t0002 a0065c0112t0003 a0079c0034t0001	a0002c0008t0003g0124 a0006c0023t0001g0078 a0006c0023t0001g0080 others(3): Show a0002c0008t0003g0124 a0006c0023t0001g0078 a0006c0023t0001g0080 a0033c0084t0002g0097 a0065c0112t0003g0112 a0079c0034t0001g0013	6	174	0.0345	23	c.406 others(42): Show c.4066-4975_4066-4974insTTTTTTTTTTTTTTTTTTTTTTT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240271098	G G	GTTTTTTT others(16): Show GTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG02280.hp1 HG00140.hp2 HG02280.hp1	a0029 a0081 a0029 a0081	a0029c0063 a0081c0031 a0029c0063 a0081c0031	a0029c0063t0009 a0081c0031t0001 a0029c0063t0009 a0081c0031t0001	a0029c0063t0009g0059 a0081c0031t0001g0018 a0029c0063t0009g0059 a0081c0031t0001g0018	2	174	0.0115	23	c.415 others(44): Show c.4153+13085_4153+13086insTTTTTTTTTTTTTTTTTTTTTTT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240296126	C C	CTGTTTCT others(16): Show CTGTTTCTCTATACTGCTACAGTT	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0084 a0084	a0084c0054 a0084c0054	a0084c0054t0003 a0084c0054t0003	a0084c0054t0003g0027 a0084c0054t0003g0027	1	174	0.0058	23	c.421 others(42): Show c.4215+1245_4215+1267dupGTTTCTCTATACTGCTACAGTTT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMNL1_chr17_45216885_45252318	45217511	T T	TTCCTTCC others(16): Show TTCCTTCCTTCCTTCCTTCCTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02683.hp2 HG03017.hp2 HG02683.hp2 HG03017.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0108 a0001c0002t0001g0110 a0001c0002t0001g0108 a0001c0002t0001g0110	2	384	0.0052	23	c.-46 others(34): Show c.-4614_-4613insTCCTTCCTTCCTTCCTTCCTTCC	FMNL1	ENSG00000184922.15	transcript	ENST00000331495.8	protein_coding		4373		chr17	TogoVar
FMNL2_chr2_152330174_152654826	152495653	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01081.hp2 NA21309.hp1 HG01081.hp2 NA21309.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0002 a0001c0003t0001 a0001c0003t0002	a0001c0003t0001g0130 a0001c0003t0002g0129 a0001c0003t0001g0130 a0001c0003t0002g0129	2	200	0.0100	23	c.118 others(42): Show c.118-26276_118-26275insAAAAAAAAAAAAAAAAAAAAAAA	FMNL2	ENSG00000157827.20	transcript	ENST00000288670.14	protein_coding	1/25		INFO_REALIGN_3_PRIME	chr2	TogoVar
FMNL2_chr2_152330174_152654826	152568218	G G	GTTTTTTT others(16): Show GTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02486.hp2 HG03130.hp2 HG02451.hp2 HG02486.hp2 HG03130.hp2	a0001 a0003 a0001 a0003	a0001c0013 a0003c0018 a0001c0013 a0003c0018	a0001c0013t0004 a0003c0018t0003 a0001c0013t0004 a0003c0018t0003	a0001c0013t0004g0093 a0001c0013t0004g0096 a0003c0018t0003g0146 a0001c0013t0004g0093 a0001c0013t0004g0096 a0003c0018t0003g0146	3	200	0.0150	23	c.597 others(40): Show c.597-6903_597-6902insTTTTTTTTTTTTTTTTTTTTTTT	FMNL2	ENSG00000157827.20	transcript	ENST00000288670.14	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr2	TogoVar
FMNL3_chr12_49631499_49712405	49709737	T T	TATTGTAG others(16): Show TATTGTAGGCTATTGTGTGAGGAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp2 HG03540.hp1 HG04115.hp1 others(2): Show HG02451.hp2 HG03540.hp1 HG04115.hp1 HG04199.hp1 NA18960.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0016 a0001c0001t0017 a0001c0002t0043 a0001c0001t0016 a0001c0001t0017 a0001c0002t0043	a0001c0001t0016g0097 a0001c0001t0016g0098 a0001c0001t0017g0099 others(2): Show a0001c0001t0016g0097 a0001c0001t0016g0098 a0001c0001t0017g0099 a0001c0001t0017g0100 a0001c0002t0043g0101	5	150	0.0333	23	c.-25 others(34): Show c.-2580_-2558dupGTCCTCACACAATAGCCTACAAT	FMNL3	ENSG00000161791.14	transcript	ENST00000335154.10	protein_coding		2333		chr12	TogoVar
FMO3_chr1_171085905_171122819	171096071	T T	TAATATAT others(16): Show TAATATATATTATATATAAATATA	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01517.hp1 HG02895.hp1 others(2): Show HG01515.hp2 HG01517.hp1 HG02895.hp1 HG03209.hp1 NA21309.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0041 a0002c0003t0001g0159 a0002c0003t0001g0178 others(1): Show a0002c0003t0001g0041 a0002c0003t0001g0159 a0002c0003t0001g0178 a0002c0003t0001g0179	5	404	0.0124	23	c.132 others(40): Show c.132+3281_132+3282insAATATATATTATATATAAATATA	FMO3	ENSG00000007933.13	transcript	ENST00000367755.9	protein_coding	2/8			chr1	TogoVar
FMR1_chrX_147906919_147956125	147918555	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0180 a0001c0001t0060g0180	1	304	0.0033	23	c.52- others(38): Show c.52-3375_52-3353dupTTTTTTTTTTTTTTTTTTTTTTT	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/16		INFO_REALIGN_3_PRIME	chrX	TogoVar
FN1_chr2_215355865_215441068	215370540	C C	CCAAAAAA others(16): Show CCAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02717.hp2 HG02615.hp2 HG02717.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0067 a0001c0005t0001g0229 a0001c0005t0001g0067 a0001c0005t0001g0229	2	240	0.0083	23	c.671 others(40): Show c.6715-109_6715-108insTTTTTTTTTTTTTTTTTTTTTTG	FN1	ENSG00000115414.21	transcript	ENST00000354785.11	protein_coding	40/45			chr2	TogoVar
FN3KRP_chr17_82711706_82733013	82727173	C C	CAGCCTTT others(16): Show CAGCCTTTGAAGCCTCTGTCAAGG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18957.hp2 NA18957.hp2	a0010 a0010	a0010c0012 a0010c0012	a0010c0012t0010 a0010c0012t0010	a0010c0012t0010g0056 a0010c0012t0010g0056	1	426	0.0024	23	c.2_ others(28): Show c.2_*3insAGCCTTTGAAGCCTCTGTCAAGG	FN3KRP	ENSG00000141560.15	transcript	ENST00000269373.11	protein_coding	6/6	3		chr17	TogoVar
FNBP1_chr9_129882187_130048189	129893612	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0132 a0002c0002t0001g0132	1	212	0.0047	23	c.184 others(42): Show c.1846+2203_1846+2225dupTTTTTTTTTTTTTTTTTTTTTTT	FNBP1	ENSG00000187239.19	transcript	ENST00000446176.7	protein_coding	16/16			chr9	TogoVar
FNBP1_chr9_129882187_130048189	129893637	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0003 a0003	a0003c0009 a0003c0009	a0003c0009t0008 a0003c0009t0008	a0003c0009t0008g0029 a0003c0009t0008g0029	1	212	0.0047	23	c.184 others(42): Show c.1846+2200_1846+2201insCTTTTTTTTTTTTTTTTTTTTTT	FNBP1	ENSG00000187239.19	transcript	ENST00000446176.7	protein_coding	16/16			chr9	TogoVar
FNBP1_chr9_129882187_130048189	129958985	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03540.hp2 HG03225.hp2 HG03540.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0011 a0001c0001 a0002c0011	a0001c0001t0001 a0002c0011t0024 a0001c0001t0001 a0002c0011t0024	a0001c0001t0001g0041 a0002c0011t0024g0033 a0001c0001t0001g0041 a0002c0011t0024g0033	2	212	0.0094	23	c.346 others(38): Show c.346-433_346-432insTTTTTTTTTTTTTTTTTTTTTTT	FNBP1	ENSG00000187239.19	transcript	ENST00000446176.7	protein_coding	4/16			chr9	TogoVar
FNBP4_chr11_47711494_47772341	47742477	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02717.hp2 HG03098.hp2 HG02630.hp1 HG02717.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0012 a0001c0001t0001g0015 a0001c0001t0001g0017	3	350	0.0086	23	c.145 others(42): Show c.1456+1453_1456+1475dupTTTTTTTTTTTTTTTTTTTTTTT	FNBP4	ENSG00000109920.13	transcript	ENST00000263773.10	protein_coding	8/16			chr11	TogoVar
FNDC3B_chr3_172034578_172406669	172174944	C C	CCCCCCCC others(16): Show CCCCCCCCCCCCCCCCCCCCCCCG	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0004 a0004	a0004c0013 a0004c0013	a0004c0013t0001 a0004c0013t0001	a0004c0013t0001g0082 a0004c0013t0001g0082	1	196	0.0051	23	c.187 others(42): Show c.187+41400_187+41401insCCCCCCCCCCCCCCCCCCCCGCC	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	3/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FNTB_chr14_64981895_65067650	65000838	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01123.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0266 a0001c0001t0001g0266	1	360	0.0028	23	c.145 others(40): Show c.145-3408_145-3407insAAAAAAAAAAAAAAAAAAAGAAA	FNTB	ENSG00000257365.8	transcript	ENST00000246166.3	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr14	TogoVar
FOCAD_chr9_20679259_21000950	20815123	G G	GGTTTTTT others(16): Show GGTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18973.hp2 NA18973.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0007 a0002c0002t0007	a0002c0002t0007g0155 a0002c0002t0007g0155	1	320	0.0031	23	c.145 others(42): Show c.1456-4673_1456-4672insGTTTTTTTTTTTTTTTTTTTTTT	FOCAD	ENSG00000188352.13	transcript	ENST00000338382.11	protein_coding	11/43			chr9	TogoVar
FOCAD_chr9_20679259_21000950	20986266	A A	ATTTTTTT others(16): Show ATTTTTTTTTTTTTTTTTTTTTTT	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG01070.hp2 HG01071.hp2 HG01074.hp1 others(19): Show HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01167.hp2 HG01169.hp1 HG01257.hp1 HG02080.hp1 HG02258.hp2 HG02523.hp1 HG02615.hp2 HG03239.hp2 NA18939.hp1 NA18951.hp1 NA18957.hp1 NA18959.hp2 NA18973.hp2 NA18984.hp2 NA19009.hp1 NA19074.hp2 NA19081.hp1 NA19085.hp2 NA20129.hp2	a0001 a0002 a0010 others(1): Show a0001 a0002 a0010 a0011	a0001c0001 a0002c0002 a0010c0018 others(1): Show a0001c0001 a0002c0002 a0010c0018 a0011c0017	a0001c0001t0001 a0002c0002t0001 a0002c0002t0007 others(2): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0007 a0010c0018t0001 a0011c0017t0001	a0001c0001t0001g0185 a0001c0001t0001g0197 a0001c0001t0001g0235 others(19): Show a0001c0001t0001g0185 a0001c0001t0001g0197 a0001c0001t0001g0235 a0002c0002t0001g0017 a0002c0002t0001g0025 a0002c0002t0001g0026 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0030 a0002c0002t0001g0040 a0002c0002t0001g0048 a0002c0002t0001g0088 a0002c0002t0001g0105 a0002c0002t0001g0106 a0002c0002t0001g0126 a0002c0002t0001g0134 a0002c0002t0001g0192 a0002c0002t0001g0284 a0002c0002t0007g0155 a0010c0018t0001g0206 a0010c0018t0001g0207 a0011c0017t0001g0171	22	320	0.0688	23	c.472 others(36): Show c.4729-5_4729-4insTTTTTTTTTTTTTTTTTTTTTTT	FOCAD	ENSG00000188352.13	transcript	ENST00000338382.11	protein_coding	39/43		INFO_REALIGN_3_PRIME	chr9	TogoVar
FOLR2_chr11_72211794_72226950	72217277	C C	CCTCCCAA others(16): Show CCTCCCAAAGTGCTGGGATTACAG	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01515.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0025	1	384	0.0026	23	c.-25 others(38): Show c.-25+353_-25+375dupCTCCCAAAGTGCTGGGATTACAG	FOLR2	ENSG00000165457.15	transcript	ENST00000298223.11	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr11	TogoVar
FOLR2_chr11_72211794_72226950	72223332	G G	GGGATCTC others(16): Show GGGATCTCTCTCAACAACAACAAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	384	0.0026	23	c.15 others(34): Show c.1570_*1571insGGATCTCTCTCAACAACAACAAC	FOLR2	ENSG00000165457.15	transcript	ENST00000298223.11	protein_coding		1383		chr11	TogoVar
FOLR3_chr11_72130725_72144892	72133615	C C	CTTCTTCT others(16): Show CTTCTTCTTCTTCTTCTTCTTCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	384	0.0026	23	c.-21 others(34): Show c.-2160_-2159insTTCTTCTTCTTCTTCTTCTTCTT	FOLR3	ENSG00000110203.10	transcript	ENST00000611028.3	protein_coding		2109		chr11	TogoVar
FOXD2_chr1_47433044_47445691	47435550	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp1 HG01361.hp1 HG01361.hp2 others(10): Show HG01081.hp1 HG01361.hp1 HG01361.hp2 HG02071.hp1 HG02559.hp2 HG03710.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 NA18940.hp2 NA18981.hp2 NA19067.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0016 a0001c0001 a0001c0016	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0016t0001	a0001c0001t0001g0000 a0001c0001t0003g0000 a0001c0001t0006g0000 others(1): Show a0001c0001t0001g0000 a0001c0001t0003g0000 a0001c0001t0006g0000 a0001c0016t0001g0000	13	416	0.0313	23	c.-25 others(34): Show c.-2586_-2585insAAAAAAAAAAAAAAAAAAAAAAA	FOXD2	ENSG00000186564.6	transcript	ENST00000334793.6	protein_coding		2493		chr1	TogoVar
FOXD2_chr1_47433044_47445691	47435570	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp2 HG00741.hp1 HG01256.hp1 others(4): Show HG00738.hp2 HG00741.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG02630.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	7	416	0.0168	23	c.-25 others(34): Show c.-2566_-2565insAAAAAAAAAAAAAAAAAAAAAAG	FOXD2	ENSG00000186564.6	transcript	ENST00000334793.6	protein_coding		2473		chr1	TogoVar
FOXI1_chr5_170100897_170114734	170105346	A A	AGGAGAGG others(16): Show AGGAGAGGGGGGGGGTGGGGGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	23	c.-61 others(32): Show c.-612_-611insGGAGAGGGGGGGGGTGGGGGGGG	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		550		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105370	G G	GAGAGAGA others(16): Show GAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0001 a0001c0001t0003g0001	1	412	0.0024	23	c.-58 others(32): Show c.-588_-587insAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		526		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105370	G G	GGGGGAGA others(16): Show GGGGGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0009 a0001c0003t0004g0009	1	412	0.0024	23	c.-58 others(32): Show c.-588_-587insGGGGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		526		chr5	TogoVar
FOXK1_chr7_4677295_4776442	4733971	G G	GCTGGCCA others(16): Show GCTGGCCACGTGGAGTCTGCCCTC	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01884.hp2 HG02109.hp1 others(10): Show HG01081.hp2 HG01884.hp2 HG02109.hp1 HG02486.hp1 HG02559.hp2 HG02615.hp1 HG02717.hp2 HG02723.hp2 HG02818.hp2 HG02970.hp1 HG03130.hp2 HG03139.hp1 HG03209.hp1	a0001 a0002 a0001 a0002	a0001c0003 a0001c0006 a0001c0011 others(1): Show a0001c0003 a0001c0006 a0001c0011 a0002c0013	a0001c0003t0010 a0001c0003t0036 a0001c0003t0047 others(7): Show a0001c0003t0010 a0001c0003t0036 a0001c0003t0047 a0001c0003t0100 a0001c0003t0104 a0001c0006t0052 a0001c0006t0053 a0001c0006t0054 a0001c0011t0006 a0002c0013t0010	a0001c0003t0010g0077 a0001c0003t0010g0100 a0001c0003t0010g0231 others(10): Show a0001c0003t0010g0077 a0001c0003t0010g0100 a0001c0003t0010g0231 a0001c0003t0036g0004 a0001c0003t0047g0072 a0001c0003t0100g0248 a0001c0003t0104g0092 a0001c0006t0052g0078 a0001c0006t0053g0076 a0001c0006t0054g0075 a0001c0011t0006g0082 a0001c0011t0006g0249 a0002c0013t0010g0289	13	294	0.0442	23	c.561 others(40): Show c.561-6865_561-6843dupTGGCCACGTGGAGTCTGCCCTCC	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXK1_chr7_4677295_4776442	4769918	A A	AGAGTGCA others(16): Show AGAGTGCAGGAAAGCTGGGGCCAG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0004 a0004	a0004c0016 a0004c0016	a0004c0016t0106 a0004c0016t0106	a0004c0016t0106g0146 a0004c0016t0106g0146	1	294	0.0034	23	c.74 others(34): Show c.7456_*7478dupAGTGCAGGAAAGCTGGGGCCAGG	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	9/9	7479	INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXK2_chr17_82514732_82609602	82607555	A A	ATAATATA others(16): Show ATAATATATATTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03490.hp2 HG03490.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0041 a0002c0002t0041	a0002c0002t0041g0102 a0002c0002t0041g0102	1	308	0.0033	23	c.60 others(34): Show c.6056_*6057insTAATATATATTTTTTTTTTTTTT	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2954		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607555	A A	ATATATAT others(16): Show ATATATATATATATATTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00438.hp1 HG00438.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0051 a0001c0001t0015g0301 a0001c0001t0015g0051 a0001c0001t0015g0301	2	308	0.0065	23	c.60 others(34): Show c.6056_*6057insTATATATATATATATTTTTTTTT	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2954		chr17	TogoVar
FOXK2_chr17_82514732_82609602	82607555	A A	ATATATAT others(16): Show ATATATATATATATTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18990.hp1 NA18990.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0302 a0001c0001t0001g0302	1	308	0.0033	23	c.60 others(34): Show c.6056_*6057insTATATATATATATTTTTTTTTTT	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		2954		chr17	TogoVar
FOXN3_chr14_89151177_89422233	89312284	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02895.hp1 HG02895.hp2 others(4): Show HG02818.hp1 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02897.hp2 HG03195.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0011 a0001c0001t0016 a0001c0001t0065 others(2): Show a0001c0001t0011 a0001c0001t0016 a0001c0001t0065 a0001c0002t0011 a0001c0002t0060	a0001c0001t0011g0180 a0001c0001t0011g0181 a0001c0001t0011g0209 others(4): Show a0001c0001t0011g0180 a0001c0001t0011g0181 a0001c0001t0011g0209 a0001c0001t0016g0162 a0001c0001t0065g0201 a0001c0002t0011g0111 a0001c0002t0060g0114	7	230	0.0304	23	c.681 others(42): Show c.681-31271_681-31270insTTTTTTTTTTTTTTTTTTTTTTT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN4_chr12_109272978_109314284	109304292	A A	AAAGAAAG others(16): Show AAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0141 a0001c0001t0001g0141	1	368	0.0027	23	c.86+ others(38): Show c.86+3943_86+3944insCTTTCTTTCTTTCTTTCTTTCTT	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding	2/9			chr12	TogoVar
FOXO3_chr6_108555917_108689774	108569987	G G	GTTTTTTT others(16): Show GTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01074.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0014 a0002c0004t0001g0014	1	278	0.0036	23	c.621 others(40): Show c.621+8166_621+8188dupTTTTTTTTTTTTTTTTTTTTTTT	FOXO3	ENSG00000118689.15	transcript	ENST00000406360.2	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr6	TogoVar
FOXP1_chr3_70949708_71588728	71085735	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02922.hp1 HG03471.hp2 HG02809.hp2 HG02922.hp1 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0042 a0001c0001t0061 a0001c0001t0033 a0001c0001t0042 a0001c0001t0061	a0001c0001t0033g0057 a0001c0001t0042g0059 a0001c0001t0061g0077 a0001c0001t0033g0057 a0001c0001t0042g0059 a0001c0001t0061g0077	3	96	0.0313	23	c.282 others(42): Show c.282+26800_282+26801insAAAAAAAAAAAAAAAAAAAAAAA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	7/20			chr3	TogoVar

Search by Variant

Search

Search Results (Total: 8696 hits)