Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LOC128462377_chr16_89312046_89423292	89415829	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG02165.hp1 HG02258.hp2 others(5): Show HG00099.hp1 HG02165.hp1 HG02258.hp2 HG02683.hp2 HG02809.hp2 HG03834.hp1 NA18946.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0012 a0001c0001t0000g0149 a0001c0001t0000g0150 others(5): Show a0001c0001t0000g0012 a0001c0001t0000g0149 a0001c0001t0000g0150 a0001c0001t0000g0151 a0001c0001t0000g0152 a0001c0001t0000g0153 a0001c0001t0000g0154 a0001c0001t0000g0155	8	366	0.0219	23	c.9+2 others(36): Show c.9+2454_9+2455insTTTTTTTTTTTTTTTTTTTTTTT	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC400499_chr16_11367015_11532247	11499297	A A	AGAGGGGA others(16): Show AGAGGGGAGGGGGGAAGGGAGGCG	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01243.hp1 HG01255.hp2 others(1): Show HG01081.hp2 HG01243.hp1 HG01255.hp2 HG01361.hp1	a0015 a0097 a0244 a0015 a0097 a0244	a0015c0012 a0097c0110 a0244c0053 a0015c0012 a0097c0110 a0244c0053	a0015c0012t0002 a0097c0110t0003 a0244c0053t0001 a0015c0012t0002 a0097c0110t0003 a0244c0053t0001	a0015c0012t0002g0023 a0015c0012t0002g0025 a0097c0110t0003g0068 others(1): Show a0015c0012t0002g0023 a0015c0012t0002g0025 a0097c0110t0003g0068 a0244c0053t0001g0075	4	310	0.0129	23	c.124 others(42): Show c.1245+1506_1245+1507insCGCCTCCCTTCCCCCCTCCCCTC	LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding	10/66			chr16	TogoVar
LONP1_chr19_5686834_5725146	5694638	C C	CGGGCGCG others(16): Show CGGGCGCGGGGGTGGTGGGGTGAT	intron_variant intron_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0037	1	386	0.0026	23	c.215 others(38): Show c.2155-87_2155-86insATCACCCCACCACCCCCGCGCCC	LONP1	ENSG00000196365.12	transcript	ENST00000360614.8	protein_coding	14/17			chr19	TogoVar
LONP1_chr19_5686834_5725146	5696635	C C	CGGGTCAG others(16): Show CGGGTCAGGGTTGCCTGGGGCTCT	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01346.hp1 HG02027.hp2 others(5): Show HG01243.hp2 HG01346.hp1 HG02027.hp2 HG03688.hp1 NA18943.hp1 NA18946.hp1 NA18999.hp2 NA19010.hp1	a0001 a0003 a0008 a0001 a0003 a0008	a0001c0020 a0001c0032 a0003c0003 others(1): Show a0001c0020 a0001c0032 a0003c0003 a0008c0014	a0001c0020t0001 a0001c0032t0005 a0003c0003t0001 others(1): Show a0001c0020t0001 a0001c0032t0005 a0003c0003t0001 a0008c0014t0001	a0001c0020t0001g0317 a0001c0032t0005g0071 a0003c0003t0001g0341 others(5): Show a0001c0020t0001g0317 a0001c0032t0005g0071 a0003c0003t0001g0341 a0003c0003t0001g0342 a0003c0003t0001g0343 a0003c0003t0001g0344 a0003c0003t0001g0345 a0008c0014t0001g0014	8	386	0.0207	23	c.177 others(38): Show c.1773+34_1773+35insAGAGCCCCAGGCAACCCTGACCC	LONP1	ENSG00000196365.12	transcript	ENST00000360614.8	protein_coding	11/17			chr19	TogoVar
LONP1_chr19_5686834_5725146	5709907	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02027.hp2	a0008 a0008	a0008c0014 a0008c0014	a0008c0014t0001 a0008c0014t0001	a0008c0014t0001g0014 a0008c0014t0001g0014	1	386	0.0026	23	c.871 others(40): Show c.871-1527_871-1505dupTTTTTTTTTTTTTTTTTTTTTTT	LONP1	ENSG00000196365.12	transcript	ENST00000360614.8	protein_coding	4/17			chr19	TogoVar
LONP2_chr16_48239300_48362349	48354196	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0041 a0001c0002t0041	a0001c0002t0041g0013 a0001c0002t0041g0013	1	154	0.0065	23	c.24 others(34): Show c.2401_*2423dupTTTTTTTTTTTTTTTTTTTTTTT	LONP2	ENSG00000102910.14	transcript	ENST00000285737.9	protein_coding	15/15	2424	INFO_REALIGN_3_PRIME	chr16	TogoVar
LOXHD1_chr18_46472273_46662220	46494845	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03471.hp2 HG03098.hp1 HG03471.hp2	a0003 a0008 a0003 a0008	a0003c0003 a0008c0018 a0003c0003 a0008c0018	a0003c0003t0001 a0008c0018t0001 a0003c0003t0001 a0008c0018t0001	a0003c0003t0001g0196 a0008c0018t0001g0124 a0003c0003t0001g0196 a0008c0018t0001g0124	2	270	0.0074	23	c.587 others(42): Show c.5879-5704_5879-5703insAAAAAAAAAAAAAAAAAAAAAAA	LOXHD1	ENSG00000167210.17	transcript	ENST00000642948.1	protein_coding	37/40			chr18	TogoVar
LOXHD1_chr18_46472273_46662220	46524181	G G	GAGTGCTT others(16): Show GAGTGCTTTGTGTGATGCTCTAGT	intron_variant intron_variant	MODIFIER	NA19000.hp2 NA19000.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0110 a0003c0003t0001g0110	1	270	0.0037	23	c.487 others(40): Show c.4876+262_4876+284dupACTAGAGCATCACACAAAGCACT	LOXHD1	ENSG00000167210.17	transcript	ENST00000642948.1	protein_coding	31/40			chr18	TogoVar
LOXHD1_chr18_46472273_46662220	46545627	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03579.hp1 NA18961.hp1 HG03540.hp1 HG03579.hp1 NA18961.hp1	a0003 a0006 a0003 a0006	a0003c0003 a0006c0006 a0003c0003 a0006c0006	a0003c0003t0001 a0006c0006t0001 a0003c0003t0001 a0006c0006t0001	a0003c0003t0001g0122 a0006c0006t0001g0149 a0006c0006t0001g0192 a0003c0003t0001g0122 a0006c0006t0001g0149 a0006c0006t0001g0192	3	270	0.0111	23	c.351 others(40): Show c.3515-207_3515-206insAAAAAAAAAAAAAAAAAAAAAAA	LOXHD1	ENSG00000167210.17	transcript	ENST00000642948.1	protein_coding	22/40			chr18	TogoVar
LOXL4_chr10_98242690_98273194	98268404	C C	CGGGGGGC others(16): Show CGGGGGGCGGGGGGAGCGGGGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG00733.hp2 HG01069.hp1 others(9): Show HG00280.hp1 HG00733.hp2 HG01069.hp1 HG01099.hp2 HG01496.hp2 HG02056.hp2 HG02647.hp2 HG02922.hp2 NA18522.hp1 NA18984.hp2 NA19079.hp1 NA21309.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0001 a0001c0002t0006 a0001c0004t0001 a0001c0002t0001 a0001c0002t0006 a0001c0004t0001	a0001c0002t0001g0031 a0001c0002t0001g0065 a0001c0002t0006g0108 others(5): Show a0001c0002t0001g0031 a0001c0002t0001g0065 a0001c0002t0006g0108 a0001c0004t0001g0005 a0001c0004t0001g0016 a0001c0004t0001g0025 a0001c0004t0001g0114 a0001c0004t0001g0118	12	438	0.0274	23	c.-30 others(32): Show c.-306_-305insCCCCCCCGCTCCCCCCGCCCCCC	LOXL4	ENSG00000138131.4	transcript	ENST00000260702.4	protein_coding		211		chr10	TogoVar
LOXL4_chr10_98242690_98273194	98268404	C C	CGGGGGGC others(16): Show CGGGGGGCGGGGGGGAGCGGGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0006 a0006	a0006c0017 a0006c0017	a0006c0017t0001 a0006c0017t0001	a0006c0017t0001g0113 a0006c0017t0001g0113	1	438	0.0023	23	c.-30 others(32): Show c.-306_-305insCCCCCCGCTCCCCCCCGCCCCCC	LOXL4	ENSG00000138131.4	transcript	ENST00000260702.4	protein_coding		211		chr10	TogoVar
LPAR5_chr12_6613835_6640959	6630433	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0074 a0001c0001t0003g0074	1	406	0.0025	23	c.-21 others(42): Show c.-217+5451_-217+5473dupAAAAAAAAAAAAAAAAAAAAAAA	LPAR5	ENSG00000184574.10	transcript	ENST00000329858.9	protein_coding	1/1			chr12	TogoVar
LPCAT1_chr5_1456427_1528960	1468008	T T	TGGGAGGG others(16): Show TGGGAGGGGCGTCGCCTCTCTTCA	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0004 a0001c0007t0004	a0001c0007t0004g0256 a0001c0007t0004g0256	1	386	0.0026	23	c.127 others(42): Show c.1279-1141_1279-1119dupTGAAGAGAGGCGACGCCCCTCCC	LPCAT1	ENSG00000153395.10	transcript	ENST00000283415.4	protein_coding	12/13			chr5	TogoVar
LPIN1_chr2_11741632_11832409	11752433	A A	ATTTTTTT others(16): Show ATTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02109.hp1 HG02145.hp2 others(5): Show HG02055.hp1 HG02109.hp1 HG02145.hp2 HG02622.hp1 HG02976.hp2 HG03486.hp1 NA19043.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 a0001c0001t0018 a0001c0004t0006	a0001c0001t0002g0027 a0001c0001t0002g0028 a0001c0001t0003g0031 others(5): Show a0001c0001t0002g0027 a0001c0001t0002g0028 a0001c0001t0003g0031 a0001c0001t0005g0030 a0001c0001t0005g0277 a0001c0001t0010g0071 a0001c0001t0018g0032 a0001c0004t0006g0072	8	278	0.0288	23	c.-10 others(40): Show c.-10+5778_-10+5779insTTTTTTTTTTTTTTTTTTTTTTT	LPIN1	ENSG00000134324.12	transcript	ENST00000674199.1	protein_coding	1/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
LPIN2_chr18_2911999_3018144	2958141	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01070.hp1 NA18982.hp2 HG01070.hp1 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0122 a0001c0001t0007 a0001c0001t0122	a0001c0001t0007g0170 a0001c0001t0122g0341 a0001c0001t0007g0170 a0001c0001t0122g0341	2	380	0.0053	23	c.192 others(40): Show c.192+2507_192+2508insTTTTTTTTTTTTTTTTTTTTTTT	LPIN2	ENSG00000101577.11	transcript	ENST00000677752.1	protein_coding	2/19			chr18	TogoVar
LPP_chr3_188149157_188895671	188371641	A A	ATATATAT others(16): Show ATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0002 a0002	a0002c0014 a0002c0014	a0002c0014t0065 a0002c0014t0065	a0002c0014t0065g0009 a0002c0014t0065g0009	1	76	0.0132	23	c.-10 others(42): Show c.-10+29923_-10+29924insATATATATATATATATATTTTTT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188441609	C C	CTTTTCTT others(16): Show CTTTTCTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0023 a0002c0003t0023	a0002c0003t0023g0001 a0002c0003t0023g0001	1	76	0.0132	23	c.193 others(42): Show c.193+35300_193+35301insCTTTTTTTTTTTTTTTTTTTTTT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188485796	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0021 a0002c0007t0021	a0002c0007t0021g0063 a0002c0007t0021g0063	1	76	0.0132	23	c.306 others(40): Show c.306+1110_306+1111insAAAAAAAAAAAAAAAAAAAAAAA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188881139	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0032 a0001c0006t0032	a0001c0006t0032g0005 a0001c0006t0032g0005	1	76	0.0132	23	c.66 others(34): Show c.6679_*6680insAAAAAAAAAAAAAAAAAAAAAAA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	12/12	6680	INFO_REALIGN_3_PRIME	chr3	TogoVar
LRBA_chr4_150259435_151020284	150371182	A A	ATTTTTTT others(16): Show ATTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0121 a0001c0001t0001g0121	1	180	0.0056	23	c.719 others(44): Show c.7195-21046_7195-21024dupAAAAAAAAAAAAAAAAAAAAAAA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	47/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150648158	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02027.hp1 NA18979.hp2 NA18986.hp1 HG02027.hp1 NA18979.hp2 NA18986.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0035 a0001c0001 a0003c0035	a0001c0001t0001 a0003c0035t0003 a0001c0001t0001 a0003c0035t0003	a0001c0001t0001g0014 a0001c0001t0001g0112 a0003c0035t0003g0154 a0001c0001t0001g0014 a0001c0001t0001g0112 a0003c0035t0003g0154	3	180	0.0167	23	c.592 others(44): Show c.5921+35392_5921+35393insTTTTTTTTTTTTTTTTTTTTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150694462	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00597.hp2 NA18612.hp2 NA18941.hp1 others(7): Show HG00597.hp2 NA18612.hp2 NA18941.hp1 NA18948.hp1 NA18957.hp2 NA18984.hp2 NA18986.hp2 NA19004.hp1 NA19079.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0001 a0001c0001t0002 a0001c0001t0005	a0001c0001t0001g0046 a0001c0001t0002g0013 a0001c0001t0002g0022 others(7): Show a0001c0001t0001g0046 a0001c0001t0002g0013 a0001c0001t0002g0022 a0001c0001t0002g0028 a0001c0001t0002g0036 a0001c0001t0002g0064 a0001c0001t0002g0099 a0001c0001t0005g0023 a0001c0001t0005g0030 a0001c0001t0005g0033	10	180	0.0556	23	c.575 others(44): Show c.5755-10746_5755-10745insTTTTTTTTTTTTTTTTTTTTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	36/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150861270	G G	GTGTGTGT others(16): Show GTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0049 a0001c0001t0002g0049	1	180	0.0056	23	c.276 others(42): Show c.2766+6400_2766+6401insACACACACACACACACACACACA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	22/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	151008988	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0003 a0004c0006t0003	a0004c0006t0003g0150 a0004c0006t0003g0150	1	180	0.0056	23	c.216 others(40): Show c.216+5438_216+5439insATATTTTTTTTTTTTTTTTTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	2/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	151008988	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02165.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0003 a0004c0006t0003	a0004c0006t0003g0142 a0004c0006t0003g0142	1	180	0.0056	23	c.216 others(40): Show c.216+5438_216+5439insATATATATATATTTTTTTTTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	2/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	151008988	A A	AAAAAAAA others(16): Show AAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0020 a0001c0001t0002g0020	1	180	0.0056	23	c.216 others(40): Show c.216+5438_216+5439insATATATATATATATTTTTTTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	2/56			chr4	TogoVar
LRCH1_chr13_46548170_46749898	46558572	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01346.hp1 NA18954.hp1 others(1): Show HG00735.hp1 HG01346.hp1 NA18954.hp1 NA19070.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0011 a0001c0001 a0003c0011	a0001c0001t0001 a0001c0001t0002 a0003c0011t0001 a0001c0001t0001 a0001c0001t0002 a0003c0011t0001	a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0002g0127 others(1): Show a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0002g0127 a0003c0011t0001g0009	4	274	0.0146	23	c.307 others(40): Show c.307+4873_307+4895dupAAAAAAAAAAAAAAAAAAAAAAA	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46569166	G G	GGCATTTA others(16): Show GGCATTTAACAAGTGGCATTTTAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01109.hp1 HG01257.hp2 others(11): Show HG01106.hp1 HG01109.hp1 HG01257.hp2 HG02486.hp1 HG02683.hp2 NA18950.hp2 NA18954.hp2 NA18968.hp2 NA19000.hp2 NA19001.hp1 NA19057.hp1 NA19074.hp1 NA19077.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0013 a0001c0001 a0001c0003 a0001c0013	a0001c0001t0001 a0001c0001t0005 a0001c0003t0004 others(2): Show a0001c0001t0001 a0001c0001t0005 a0001c0003t0004 a0001c0003t0033 a0001c0013t0034	a0001c0001t0001g0105 a0001c0001t0001g0169 a0001c0001t0001g0207 others(11): Show a0001c0001t0001g0105 a0001c0001t0001g0169 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0212 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0254 a0001c0001t0005g0208 a0001c0003t0004g0213 a0001c0003t0033g0217 a0001c0013t0034g0174	14	274	0.0511	23	c.307 others(42): Show c.307+15463_307+15464insGCATTTAACAAGTGGCATTTTAT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19			chr13	TogoVar
LRCH1_chr13_46548170_46749898	46573866	A A	ATATATAT others(16): Show ATATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0241 a0001c0003t0004g0241	1	274	0.0037	23	c.307 others(42): Show c.307+20164_307+20165insATATATATATATATATATATTTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46573866	A A	ATATATAT others(16): Show ATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	NA19091.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0031	1	274	0.0037	23	c.307 others(42): Show c.307+20164_307+20165insATATATATATATATATATTTTTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46582648	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03017.hp2 HG03540.hp1 others(1): Show HG01891.hp1 HG03017.hp2 HG03540.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 a0001c0001 a0001c0002 a0001c0009	a0001c0001t0001 a0001c0002t0001 a0001c0009t0004 a0001c0001t0001 a0001c0002t0001 a0001c0009t0004	a0001c0001t0001g0132 a0001c0002t0001g0107 a0001c0002t0001g0152 others(1): Show a0001c0001t0001g0132 a0001c0002t0001g0107 a0001c0002t0001g0152 a0001c0009t0004g0109	4	274	0.0146	23	c.307 others(42): Show c.307+28947_307+28969dupTTTTTTTTTTTTTTTTTTTTTTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46619059	T T	TTTCCTTC others(16): Show TTTCCTTCCTTCCTTCCTTCCTTC	intron_variant intron_variant	MODIFIER	HG00099.hp1 NA19060.hp1 NA19070.hp1 HG00099.hp1 NA19060.hp1 NA19070.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0001 a0001c0002t0003 a0001c0007t0005 a0001c0001t0001 a0001c0002t0003 a0001c0007t0005	a0001c0001t0001g0040 a0001c0002t0003g0185 a0001c0007t0005g0082 a0001c0001t0001g0040 a0001c0002t0003g0185 a0001c0007t0005g0082	3	274	0.0110	23	c.308 others(42): Show c.308-31142_308-31141insTTCCTTCCTTCCTTCCTTCCTTC	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19			chr13	TogoVar
LRCH1_chr13_46548170_46749898	46619113	T T	TTCCTTCC others(16): Show TTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01975.hp2 HG01993.hp2 others(5): Show HG00621.hp1 HG01975.hp2 HG01993.hp2 HG02109.hp1 HG02258.hp1 HG02896.hp2 HG02897.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0010 others(2): Show a0001c0001 a0001c0002 a0001c0010 a0001c0012 a0001c0016	a0001c0001t0001 a0001c0001t0013 a0001c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0013 a0001c0002t0001 a0001c0010t0019 a0001c0012t0009 a0001c0016t0009	a0001c0001t0001g0019 a0001c0001t0001g0253 a0001c0001t0013g0239 others(5): Show a0001c0001t0001g0019 a0001c0001t0001g0253 a0001c0001t0013g0239 a0001c0001t0013g0247 a0001c0002t0001g0145 a0001c0010t0019g0153 a0001c0012t0009g0148 a0001c0016t0009g0007	8	274	0.0292	23	c.308 others(42): Show c.308-31087_308-31086insCCTTCCTTCCTTCCTTCCTTCCT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46657500	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0168 a0001c0001t0002g0168	1	274	0.0037	23	c.452 others(40): Show c.452+7175_452+7197dupTTTTTTTTTTTTTTTTTTTTTTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH2_chrX_115105616_115239096	115167191	T T	TAAAAAAA others(16): Show TAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0148 a0001c0001t0002g0148	1	238	0.0042	23	c.999 others(38): Show c.999-872_999-850dupTTTTTTTTTTTTTTTTTTTTTTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	6/20			chrX	TogoVar
LRCH3_chr3_197786254_197893436	197827301	A A	ATGGAAGC others(16): Show ATGGAAGCATCAGGTAAACCATAG	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02976.hp1 NA18906.hp1 HG02818.hp1 HG02976.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0021 a0001c0001t0057 a0001c0001t0008 a0001c0001t0021 a0001c0001t0057	a0001c0001t0008g0084 a0001c0001t0021g0082 a0001c0001t0057g0083 a0001c0001t0008g0084 a0001c0001t0021g0082 a0001c0001t0057g0083	3	292	0.0103	23	c.777 others(38): Show c.777+374_777+396dupCCATAGTGGAAGCATCAGGTAAA	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRFN2_chr6_40386591_40592364	40548440	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00280.hp2 NA20905.hp1 HG00280.hp2 NA20905.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0005 a0002c0005t0005	a0002c0005t0005g0033 a0002c0005t0005g0034 a0002c0005t0005g0033 a0002c0005t0005g0034	2	228	0.0088	23	c.-19 others(42): Show c.-19+38500_-19+38501insTTTTTTTTTTTTTTTTTTTTTTT	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRFN5_chr14_41601876_41909549	41610661	T T	TAAAAAAA others(16): Show TAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00621.hp1 HG02523.hp2 HG00609.hp2 HG00621.hp1 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0001 a0001c0001t0010	a0001c0001t0001g0060 a0001c0001t0010g0269 a0001c0001t0010g0270 a0001c0001t0001g0060 a0001c0001t0010g0269 a0001c0001t0010g0270	3	280	0.0107	23	c.-19 others(42): Show c.-197+2121_-197+2122insAAAAAAAAAAAAAAAAAAAAAAA	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41671617	G G	GTTTTTTT others(16): Show GTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0068 a0001c0002t0002g0068	1	280	0.0036	23	c.-19 others(44): Show c.-197+63075_-197+63076insTTTTTTTTTTTTTTTTTTTTTTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRIG1_chr3_66373797_66506022	66381180	A A	AATAGCCC others(16): Show AATAGCCCTGGTGAAAAAGTGCTG	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0003 a0003	a0003c0012 a0003c0012	a0003c0012t0018 a0003c0012t0018	a0003c0012t0018g0008 a0003c0012t0018g0008	1	264	0.0038	23	c.277 others(40): Show c.2770+276_2770+298dupCAGCACTTTTTCACCAGGGCTAT	LRIG1	ENSG00000144749.14	transcript	ENST00000273261.8	protein_coding	17/18			chr3	TogoVar
LRIT3_chr4_109843107_109877315	109850414	C C	CTTTCTTT others(16): Show CTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00735.hp1 HG00280.hp1 HG00735.hp1	a0001 a0006 a0001 a0006	a0001c0002 a0006c0009 a0001c0002 a0006c0009	a0001c0002t0001 a0006c0009t0002 a0001c0002t0001 a0006c0009t0002	a0001c0002t0001g0087 a0006c0009t0002g0088 a0001c0002t0001g0087 a0006c0009t0002g0088	2	332	0.0060	23	c.117 others(40): Show c.117-1090_117-1089insTTTCTTTCTTTCTTTCTTTCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850418	C C	CTTTCTTT others(16): Show CTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG02109.hp2 HG02615.hp2 others(3): Show HG00323.hp2 HG02109.hp2 HG02615.hp2 HG03209.hp1 NA19064.hp1 NA19088.hp2	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0002 a0002c0001 a0006c0009 a0001c0002 a0002c0001 a0006c0009	a0001c0002t0001 a0002c0001t0001 a0002c0001t0007 others(1): Show a0001c0002t0001 a0002c0001t0001 a0002c0001t0007 a0006c0009t0001	a0001c0002t0001g0013 a0001c0002t0001g0077 a0002c0001t0001g0292 others(2): Show a0001c0002t0001g0013 a0001c0002t0001g0077 a0002c0001t0001g0292 a0002c0001t0007g0293 a0006c0009t0001g0076	6	332	0.0181	23	c.117 others(40): Show c.117-1086_117-1085insTTTCTTTCTTTCTTTCTTTCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCCTT others(16): Show CCTTCCTTCCTTCCTTCTTTCTTT	intron_variant intron_variant	MODIFIER	NA18995.hp1 NA18995.hp1	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0012 a0003c0008t0012	a0003c0008t0012g0155 a0003c0008t0012g0155	1	332	0.0030	23	c.117 others(40): Show c.117-1079_117-1078insCCTTCCTTCCTTCTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCCTT others(16): Show CCTTCCTTCCTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01258.hp2 HG03516.hp1 others(3): Show HG01070.hp1 HG01258.hp2 HG03516.hp1 NA18747.hp2 NA18951.hp2 NA18980.hp1	a0002 a0003 a0002 a0003	a0002c0001 a0003c0003 a0003c0006 a0002c0001 a0003c0003 a0003c0006	a0002c0001t0003 a0002c0001t0015 a0003c0003t0002 others(1): Show a0002c0001t0003 a0002c0001t0015 a0003c0003t0002 a0003c0006t0008	a0002c0001t0003g0221 a0002c0001t0003g0222 a0002c0001t0015g0223 others(3): Show a0002c0001t0003g0221 a0002c0001t0003g0222 a0002c0001t0015g0223 a0003c0003t0002g0141 a0003c0003t0002g0157 a0003c0006t0008g0202	6	332	0.0181	23	c.117 others(40): Show c.117-1079_117-1078insCCTTCCTTCTTTCTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCCTT others(16): Show CCTTCCTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG02040.hp2 NA18961.hp1 others(1): Show HG00438.hp2 HG02040.hp2 NA18961.hp1 NA18971.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0001 a0001c0002 a0002c0001	a0001c0002t0001 a0002c0001t0003 a0002c0001t0005 a0001c0002t0001 a0002c0001t0003 a0002c0001t0005	a0001c0002t0001g0043 a0002c0001t0003g0019 a0002c0001t0005g0235 a0001c0002t0001g0043 a0002c0001t0003g0019 a0002c0001t0005g0235	4	332	0.0121	23	c.117 others(40): Show c.117-1079_117-1078insCCTTCTTTCTTTCTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCTTT others(16): Show CCTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02451.hp2 HG03704.hp2 others(4): Show HG02165.hp2 HG02451.hp2 HG03704.hp2 NA18974.hp2 NA19003.hp1 NA19062.hp1 NA19077.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0002c0001 a0003c0003 a0001c0002 a0002c0001 a0003c0003	a0001c0002t0001 a0002c0001t0003 a0002c0001t0004 others(2): Show a0001c0002t0001 a0002c0001t0003 a0002c0001t0004 a0002c0001t0005 a0003c0003t0002	a0001c0002t0001g0001 a0002c0001t0003g0257 a0002c0001t0004g0255 others(2): Show a0001c0002t0001g0001 a0002c0001t0003g0257 a0002c0001t0004g0255 a0002c0001t0005g0256 a0003c0003t0002g0169	7	332	0.0211	23	c.117 others(40): Show c.117-1079_117-1078insCTTTCTTTCTTTCTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CTTTCTTT others(16): Show CTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG02129.hp2 HG03654.hp1 others(1): Show HG01071.hp1 HG02129.hp2 HG03654.hp1 NA18989.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0015 a0002c0001 a0003c0003 others(1): Show a0001c0015 a0002c0001 a0003c0003 a0004c0005	a0001c0015t0002 a0002c0001t0003 a0003c0003t0002 others(1): Show a0001c0015t0002 a0002c0001t0003 a0003c0003t0002 a0004c0005t0006	a0001c0015t0002g0058 a0002c0001t0003g0278 a0003c0003t0002g0174 others(1): Show a0001c0015t0002g0058 a0002c0001t0003g0278 a0003c0003t0002g0174 a0004c0005t0006g0132	4	332	0.0121	23	c.117 others(40): Show c.117-1082_117-1081insTTTCTTTCTTTCTTTCTTTCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(16): Show ATATATATATATATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0129 a0003c0003t0003g0129	1	334	0.0030	23	c.613 others(40): Show c.613+4011_613+4012insAAAAAAAAAAATATATATATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(16): Show ATATATATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02698.hp2 HG03942.hp1 NA19240.hp2 HG02698.hp2 HG03942.hp1 NA19240.hp2	a0003 a0003	a0003c0003 a0003c0010 a0003c0003 a0003c0010	a0003c0003t0002 a0003c0010t0003 a0003c0003t0002 a0003c0010t0003	a0003c0003t0002g0056 a0003c0003t0002g0057 a0003c0010t0003g0038 a0003c0003t0002g0056 a0003c0003t0002g0057 a0003c0010t0003g0038	3	334	0.0090	23	c.613 others(40): Show c.613+4011_613+4012insAAAAAAAAAAAAAAAAATATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859397	T T	TATATATA others(16): Show TATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02602.hp2 HG03471.hp1 others(1): Show HG02004.hp2 HG02602.hp2 HG03471.hp1 NA18972.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0005 a0001c0001 a0002c0002 a0002c0005	a0001c0001t0001 a0002c0002t0001 a0002c0005t0007 a0001c0001t0001 a0002c0002t0001 a0002c0005t0007	a0001c0001t0001g0211 a0001c0001t0001g0212 a0002c0002t0001g0025 others(1): Show a0001c0001t0001g0211 a0001c0001t0001g0212 a0002c0002t0001g0025 a0002c0005t0007g0314	4	334	0.0120	23	c.613 others(40): Show c.613+4010_613+4011insTATATATATATATATATATATAT	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar

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