Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
NAPSA_chr19_50353477_50370639	50369558	G G	GTTTTTTT others(16): Show GTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02074.hp2 NA18969.hp2 NA18983.hp1 others(1): Show HG02074.hp2 NA18969.hp2 NA18983.hp1 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0064 a0001c0001t0001g0001 a0001c0001t0001g0064	4	350	0.0114	23	c.-39 others(34): Show c.-3960_-3938dupAAAAAAAAAAAAAAAAAAAAAAA	NAPSA	ENSG00000131400.9	transcript	ENST00000253719.7	protein_coding		3920		chr19	TogoVar
NARF_chr17_82453741_82495537	82471791	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00438.hp2 HG00558.hp1 others(19): Show HG00423.hp1 HG00438.hp2 HG00558.hp1 HG00621.hp2 HG00735.hp1 HG01175.hp1 HG01891.hp1 HG02056.hp2 HG02083.hp1 HG02083.hp2 HG02886.hp2 HG03710.hp2 NA18959.hp1 NA18961.hp2 NA18997.hp1 NA19003.hp2 NA19005.hp1 NA19012.hp2 NA19060.hp2 NA19081.hp1 NA19086.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0011 a0001c0001t0012 a0001c0001t0016	a0001c0001t0001g0008 a0001c0001t0001g0040 a0001c0001t0001g0172 others(15): Show a0001c0001t0001g0008 a0001c0001t0001g0040 a0001c0001t0001g0172 a0001c0001t0001g0177 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0211 a0001c0001t0001g0220 a0001c0001t0002g0227 a0001c0001t0006g0178 a0001c0001t0011g0008 a0001c0001t0011g0038 a0001c0001t0011g0043 a0001c0001t0012g0008 a0001c0001t0016g0008 a0001c0001t0016g0038	22	356	0.0618	23	c.386 others(38): Show c.386-757_386-756insAAAAAAAAAAAAAAAAAAAAAAA	NARF	ENSG00000141562.19	transcript	ENST00000309794.16	protein_coding	4/10		INFO_REALIGN_3_PRIME	chr17	TogoVar
NARS2_chr11_78430968_78579864	78538994	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01934.hp2 NA18987.hp2 NA19002.hp2 HG01934.hp2 NA18987.hp2 NA19002.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0128 a0001c0001t0001g0147 a0001c0001t0001g0012 a0001c0001t0001g0128 a0001c0001t0001g0147	3	294	0.0102	23	c.595 others(42): Show c.595-10081_595-10059dupTTTTTTTTTTTTTTTTTTTTTTT	NARS2	ENSG00000137513.11	transcript	ENST00000281038.10	protein_coding	5/13			chr11	TogoVar
NARS2_chr11_78430968_78579864	78579231	A A	ATTCTTGT others(16): Show ATTCTTGTCAACACTTGATCTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19056.hp2 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	294	0.0034	23	c.-47 others(34): Show c.-4744_-4743insAAAAGATCAAGTGTTGACAAGAA	NARS2	ENSG00000137513.11	transcript	ENST00000281038.10	protein_coding		4368		chr11	TogoVar
NAV1_chr1_201534127_201831969	201680726	T T	TTTTATTT others(16): Show TTTTATTTTGTTGCTCAAATTAAA	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01993.hp2 NA18963.hp1 HG01346.hp1 HG01993.hp2 NA18963.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0003 a0001c0001 a0004c0003	a0001c0001t0005 a0001c0001t0084 a0004c0003t0008 a0001c0001t0005 a0001c0001t0084 a0004c0003t0008	a0001c0001t0005g0054 a0001c0001t0084g0156 a0004c0003t0008g0060 a0001c0001t0005g0054 a0001c0001t0084g0156 a0004c0003t0008g0060	3	210	0.0143	23	c.161 others(44): Show c.1618+31315_1618+31337dupTCAAATTAAATTTATTTTGTTGC	NAV1	ENSG00000134369.16	transcript	ENST00000685211.1	protein_coding	5/33		INFO_REALIGN_3_PRIME	chr1	TogoVar
NAV2_chr11_19707837_20126601	19859137	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0002 a0002	a0002c0118 a0002c0118	a0002c0118t0001 a0002c0118t0001	a0002c0118t0001g0036 a0002c0118t0001g0036	1	166	0.0060	23	c.439 others(40): Show c.439-9766_439-9765insTTTTTTTTTTTTTTTTTTTTTTT	NAV2	ENSG00000166833.23	transcript	ENST00000349880.9	protein_coding	3/37		INFO_REALIGN_3_PRIME	chr11	TogoVar
NAV3_chr12_77825894_78218010	78091795	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02895.hp2 HG03453.hp1 HG01884.hp1 HG02895.hp2 HG03453.hp1	a0004 a0004	a0004c0017 a0004c0043 a0004c0017 a0004c0043	a0004c0017t0015 a0004c0017t0021 a0004c0043t0061 a0004c0017t0015 a0004c0017t0021 a0004c0043t0061	a0004c0017t0015g0155 a0004c0017t0021g0176 a0004c0043t0061g0003 a0004c0017t0015g0155 a0004c0017t0021g0176 a0004c0043t0061g0003	3	186	0.0161	23	c.263 others(44): Show c.2637-24959_2637-24958insAAAAAAAAAAAAAAAAAAAAAAA	NAV3	ENSG00000067798.16	transcript	ENST00000397909.7	protein_coding	12/39		INFO_REALIGN_3_PRIME	chr12	TogoVar
NBDY_chrX_56724243_56824179	56768253	C C	CTGTGGGC others(16): Show CTGTGGGCTGACTGGTCTTCGGGA	intron_variant intron_variant	MODIFIER	NA19002.hp2 NA19002.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0060 a0001c0001t0002g0060	1	160	0.0063	23	c.16 others(44): Show c.166+36057_*166+36079dupTGGGCTGACTGGTCTTCGGGATG	NBDY	ENSG00000204272.13	transcript	ENST00000374922.9	protein_coding	2/2		INFO_REALIGN_3_PRIME	chrX	TogoVar
NBEAL1_chr2_203009875_203230194	203119424	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG02083.hp2 HG02300.hp2 others(12): Show HG00597.hp2 HG02083.hp2 HG02300.hp2 HG02451.hp1 HG02602.hp1 HG02897.hp1 HG03831.hp2 NA18747.hp1 NA18945.hp1 NA18981.hp1 NA18998.hp2 NA19030.hp2 NA19062.hp1 NA19078.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0001 a0001c0001t0013 a0001c0001t0035 others(3): Show a0001c0001t0001 a0001c0001t0013 a0001c0001t0035 a0001c0001t0039 a0001c0001t0041 a0001c0008t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(12): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0052 a0001c0001t0001g0216 a0001c0001t0001g0248 a0001c0001t0001g0258 a0001c0001t0013g0251 a0001c0001t0035g0256 a0001c0001t0039g0223 a0001c0001t0041g0054 a0001c0008t0001g0239	15	292	0.0514	23	c.259 others(42): Show c.2593-2810_2593-2809insTTTTTTTTTTTTTTTTTTTTTTT	NBEAL1	ENSG00000144426.19	transcript	ENST00000683969.1	protein_coding	18/55		INFO_REALIGN_3_PRIME	chr2	TogoVar
NBEAL1_chr2_203009875_203230194	203141366	A A	ATTATTAT others(16): Show ATTATTATTATTATTATTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0002 a0001c0007t0002	a0001c0007t0002g0059 a0001c0007t0002g0059	1	292	0.0034	23	c.484 others(42): Show c.4848+2620_4848+2621insATTATTATTATTATTTTTTTTTT	NBEAL1	ENSG00000144426.19	transcript	ENST00000683969.1	protein_coding	31/55		INFO_REALIGN_3_PRIME	chr2	TogoVar
NBEAL2_chr3_46974666_47014701	46979967	C C	CGCGCCCC others(16): Show CGCGCCCCGCGCCTGCTGCACCTG	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0004 a0001c0004t0004	a0001c0004t0004g0139 a0001c0004t0004g0139	1	360	0.0028	23	c.51+ others(34): Show c.51+68_51+90dupTGCTGCACCTGGCGCCCCGCGCC	NBEAL2	ENSG00000160796.18	transcript	ENST00000450053.8	protein_coding	1/53		INFO_REALIGN_3_PRIME	chr3	TogoVar
NBEA_chr13_34937270_35677736	35631638	T T	TAAAAAAA others(16): Show TAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0092 a0001c0001t0001g0092	1	122	0.0082	23	c.761 others(42): Show c.7617+3391_7617+3413dupAAAAAAAAAAAAAAAAAAAAAAA	NBEA	ENSG00000172915.20	transcript	ENST00000379939.7	protein_coding	49/58		INFO_REALIGN_3_PRIME	chr13	TogoVar
NBPF15_chr1_144416390_144466669	144442168	A A	ATATATAT others(16): Show ATATATATAATATATATACACGTG	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0002 a0002c0004t0002	a0002c0004t0002g0044 a0002c0004t0002g0044	1	394	0.0025	23	c.-19 others(42): Show c.-190-1874_-190-1873insCACGTGTATATATATTATATATA	NBPF15	ENSG00000266338.7	transcript	ENST00000581897.7	protein_coding	6/21			chr1	TogoVar
NBPF15_chr1_144416390_144466669	144463598	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0009 a0001c0002t0001g0009	1	394	0.0025	23	c.-31 others(34): Show c.-3156_-3155insTTTTTTTTTTTTTTTTTTTTTTT	NBPF15	ENSG00000266338.7	transcript	ENST00000581897.7	protein_coding		1930		chr1	TogoVar
NBPF3_chr1_21435137_21489900	21479820	C C	CTCTCTCT others(16): Show CTCTCTCTTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0201	1	394	0.0025	23	c.120 others(40): Show c.1209-230_1209-229insCTCTCTTGTGTGTGTGTGTGTGT	NBPF3	ENSG00000142794.19	transcript	ENST00000318249.10	protein_coding	10/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
NBPF8_chr1_120410035_120474676	120457732	A A	ATATATAT others(16): Show ATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0060 a0001c0010t0060	a0001c0010t0060g0081 a0001c0010t0060g0081	1	292	0.0034	23	c.163 others(42): Show c.1638-1635_1638-1634insTATATATATATATATATATATAT	NBPF8	ENSG00000270231.5	transcript	ENST00000698216.1	protein_coding	14/22			chr1	TogoVar
NBPF9_chr1_149047186_149108551	149097082	A A	AAGGAAGG others(16): Show AAGGAAGGAAGGAGGAAGGGAGGT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0090 a0005c0005t0090	a0005c0005t0090g0283 a0005c0005t0090g0283	1	344	0.0029	23	c.-33 others(42): Show c.-337+1355_-337+1356insACCTCCCTTCCTCCTTCCTTCCT	NBPF9	ENSG00000269713.9	transcript	ENST00000698832.1	protein_coding	4/29			chr1	TogoVar
NCAM2_chr21_20993409_21548329	21437501	T T	TGTGTGTG others(16): Show TGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0005 a0003c0005t0005	a0003c0005t0005g0105 a0003c0005t0005g0105	1	132	0.0076	23	c.165 others(42): Show c.1654+5220_1654+5221insGTGTGTGTGTGTGTGTGTGTGTG	NCAM2	ENSG00000154654.15	transcript	ENST00000400546.6	protein_coding	12/17			chr21	TogoVar
NCAM2_chr21_20993409_21548329	21479583	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0047 a0002c0002t0002g0047	1	132	0.0076	23	c.207 others(42): Show c.2077+2115_2077+2137dupAAAAAAAAAAAAAAAAAAAAAAA	NCAM2	ENSG00000154654.15	transcript	ENST00000400546.6	protein_coding	15/17		INFO_REALIGN_3_PRIME	chr21	TogoVar
NCAPD2_chr12_6489102_6536955	6518504	G G	GTTTTTTT others(16): Show GTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18952.hp2 NA18971.hp1 others(3): Show NA18948.hp1 NA18952.hp2 NA18971.hp1 NA18988.hp1 NA19005.hp1 NA19091.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0014 a0003c0003t0003 a0003c0003t0014	a0003c0003t0003g0007 a0003c0003t0003g0032 a0003c0003t0003g0053 others(2): Show a0003c0003t0003g0007 a0003c0003t0003g0032 a0003c0003t0003g0053 a0003c0003t0003g0078 a0003c0003t0014g0075	6	432	0.0139	23	c.158 others(40): Show c.1589+553_1589+575dupTTTTTTTTTTTTTTTTTTTTTTT	NCAPD2	ENSG00000010292.13	transcript	ENST00000315579.10	protein_coding	13/31		INFO_REALIGN_3_PRIME	chr12	TogoVar
NCAPG2_chr7_158626169_158709804	158660401	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0263 a0001c0001t0001g0263	1	378	0.0027	23	c.198 others(42): Show c.1989+1770_1989+1792dupAAAAAAAAAAAAAAAAAAAAAAA	NCAPG2	ENSG00000146918.20	transcript	ENST00000356309.8	protein_coding	16/27			chr7	TogoVar
NCKAP1L_chr12_54492752_54553243	54506796	A A	AAAAAAAT others(16): Show AAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0076 a0001c0002t0005g0076	1	350	0.0029	23	c.307 others(40): Show c.307-1056_307-1055insAAAAATATATATATATATATATA	NCKAP1L	ENSG00000123338.13	transcript	ENST00000293373.11	protein_coding	3/30		INFO_REALIGN_3_PRIME	chr12	TogoVar
NCKAP1L_chr12_54492752_54553243	54506796	A A	AAATATAT others(16): Show AAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18959.hp1 NA18959.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0209 a0001c0001t0007g0209	1	350	0.0029	23	c.307 others(40): Show c.307-1056_307-1055insATATATATATATATATATATATA	NCKAP1L	ENSG00000123338.13	transcript	ENST00000293373.11	protein_coding	3/30		INFO_REALIGN_3_PRIME	chr12	TogoVar
NCKAP1L_chr12_54492752_54553243	54506796	A A	ATATATAT others(16): Show ATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0052 a0001c0001t0014g0052	1	350	0.0029	23	c.307 others(40): Show c.307-1057_307-1056insTATATATATATATATATATATAT	NCKAP1L	ENSG00000123338.13	transcript	ENST00000293373.11	protein_coding	3/30			chr12	TogoVar
NCKAP1_chr2_182904115_183043457	182984423	G G	GGGTGTGT others(16): Show GGGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01361.hp2 HG01099.hp1 HG01361.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0016 a0001c0004t0016	a0001c0004t0016g0001 a0001c0004t0016g0001	2	218	0.0092	23	c.100 others(42): Show c.1005-1042_1005-1041insACACACACACACACACACACACC	NCKAP1	ENSG00000061676.16	transcript	ENST00000361354.9	protein_coding	10/30			chr2	TogoVar
NCMAP_chr1_24551087_24614328	24573952	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00673.hp2 HG01081.hp2 others(18): Show HG00642.hp2 HG00673.hp2 HG01081.hp2 HG01175.hp2 HG02970.hp2 HG03704.hp2 HG03942.hp2 NA18945.hp1 NA18951.hp1 NA18960.hp1 NA18969.hp1 NA18980.hp2 NA18982.hp2 NA18995.hp2 NA18999.hp1 NA19002.hp2 NA19012.hp1 NA19057.hp2 NA19068.hp2 NA19084.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0001 a0001c0001t0002 a0001c0001t0007	a0001c0001t0001g0156 a0001c0001t0001g0162 a0001c0001t0001g0178 others(18): Show a0001c0001t0001g0156 a0001c0001t0001g0162 a0001c0001t0001g0178 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0194 a0001c0001t0001g0198 a0001c0001t0001g0199 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0212 a0001c0001t0001g0300 a0001c0001t0001g0301 a0001c0001t0001g0310 a0001c0001t0002g0166 a0001c0001t0007g0079 a0001c0001t0007g0303 a0001c0001t0007g0304 a0001c0001t0007g0315	21	402	0.0522	23	c.-8+ others(40): Show c.-8+17802_-8+17803insAAAAAAAAAAAAAAAAAAAAAAA	NCMAP	ENSG00000184454.7	transcript	ENST00000374392.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr1	TogoVar
NCMAP_chr1_24551087_24614328	24573962	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0159 a0001c0001t0028g0159	1	402	0.0025	23	c.-8+ others(40): Show c.-8+17802_-8+17803insAAAAAAAAAAAAACAAAAAAAAA	NCMAP	ENSG00000184454.7	transcript	ENST00000374392.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr1	TogoVar
NCOA1_chr2_24486254_24775702	24523605	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG02738.hp1 homoSapiens_chm13v2.hp1 HG02027.hp1 HG02738.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0218 a0001c0001t0001g0245 a0001c0001t0007g0249 a0001c0001t0001g0218 a0001c0001t0001g0245 a0001c0001t0007g0249	3	314	0.0096	23	c.-39 others(44): Show c.-396+32006_-396+32028dupAAAAAAAAAAAAAAAAAAAAAAA	NCOA1	ENSG00000084676.16	transcript	ENST00000348332.8	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr2	TogoVar
NCOA1_chr2_24486254_24775702	24552354	T T	TATATATA others(16): Show TATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0016 a0001c0003t0016	a0001c0003t0016g0111 a0001c0003t0016g0111	1	314	0.0032	23	c.-39 others(44): Show c.-395-11941_-395-11940insATATATATATATATATATATATA	NCOA1	ENSG00000084676.16	transcript	ENST00000348332.8	protein_coding	1/22			chr2	TogoVar
NCOA1_chr2_24486254_24775702	24614199	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG01952.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0064 a0001c0002t0001g0064	1	314	0.0032	23	c.-17 others(44): Show c.-175+29649_-175+29671dupTTTTTTTTTTTTTTTTTTTTTTT	NCOA1	ENSG00000084676.16	transcript	ENST00000348332.8	protein_coding	3/22		INFO_REALIGN_3_PRIME	chr2	TogoVar
NCOA1_chr2_24486254_24775702	24690651	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0205 a0001c0001t0004g0205	1	314	0.0032	23	c.533 others(38): Show c.533-825_533-803dupAAAAAAAAAAAAAAAAAAAAAAA	NCOA1	ENSG00000084676.16	transcript	ENST00000348332.8	protein_coding	8/22		INFO_REALIGN_3_PRIME	chr2	TogoVar
NCOA2_chr8_70104782_70408808	70133200	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02895.hp1 HG02486.hp1 HG02895.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0005	a0001c0003t0005g0075 a0001c0003t0005g0079 a0001c0003t0005g0075 a0001c0003t0005g0079	2	322	0.0062	23	c.315 others(42): Show c.3159-1199_3159-1198insAAAAAAAAAAAAAAAAAAAAAAA	NCOA2	ENSG00000140396.13	transcript	ENST00000452400.7	protein_coding	15/22			chr8	TogoVar
NCOA2_chr8_70104782_70408808	70335155	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0036 a0002c0002t0003g0036	1	322	0.0031	23	c.-76 others(42): Show c.-76-38356_-76-38355insATTTTTTTTTTTTTTTTTTTTTT	NCOA2	ENSG00000140396.13	transcript	ENST00000452400.7	protein_coding	1/22			chr8	TogoVar
NCOA3_chr20_47496887_47661872	47511556	T T	TATACACA others(16): Show TATACACACACACATACACATATA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp2 HG02055.hp1 others(3): Show HG00099.hp2 HG00323.hp2 HG02055.hp1 HG02055.hp2 HG02572.hp1 HG03041.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0008 a0001c0001 a0005c0008	a0001c0001t0001 a0001c0001t0017 a0005c0008t0007 a0001c0001t0001 a0001c0001t0017 a0005c0008t0007	a0001c0001t0001g0202 a0001c0001t0001g0216 a0001c0001t0001g0223 others(3): Show a0001c0001t0001g0202 a0001c0001t0001g0216 a0001c0001t0001g0223 a0001c0001t0017g0311 a0005c0008t0007g0304 a0005c0008t0007g0309	6	316	0.0190	23	c.-99 others(40): Show c.-99+9537_-99+9538insATACACACACACATACACATATA	NCOA3	ENSG00000124151.19	transcript	ENST00000371998.8	protein_coding	1/22			chr20	TogoVar
NCOA3_chr20_47496887_47661872	47511556	T T	TATATATA others(16): Show TATATATATATACATACACATATA	intron_variant intron_variant	MODIFIER	NA18992.hp1 NA20752.hp1 NA18992.hp1 NA20752.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0129 a0002c0002t0002g0146 a0002c0002t0002g0129 a0002c0002t0002g0146	2	316	0.0063	23	c.-99 others(40): Show c.-99+9537_-99+9538insATATATATATACATACACATATA	NCOA3	ENSG00000124151.19	transcript	ENST00000371998.8	protein_coding	1/22			chr20	TogoVar
NCOA3_chr20_47496887_47661872	47511556	T T	TATATATA others(16): Show TATATATATATATATACACATATA	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19080.hp1 NA19079.hp1 NA19080.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0018 a0002c0002t0018	a0002c0002t0018g0187 a0002c0002t0018g0188 a0002c0002t0018g0187 a0002c0002t0018g0188	2	316	0.0063	23	c.-99 others(40): Show c.-99+9537_-99+9538insATATATATATATATACACATATA	NCOA3	ENSG00000124151.19	transcript	ENST00000371998.8	protein_coding	1/22			chr20	TogoVar
NCOR1_chr17_16024157_16220534	16092695	A A	ATATATAT others(16): Show ATATATATATATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0261 a0001c0001t0004g0261	1	282	0.0036	23	c.282 others(40): Show c.2821-638_2821-637insAAAAAAAAATATATATATATATA	NCOR1	ENSG00000141027.23	transcript	ENST00000268712.8	protein_coding	21/45			chr17	TogoVar
NCOR1_chr17_16024157_16220534	16140997	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02723.hp2 HG02976.hp1 others(1): Show HG02622.hp1 HG02723.hp2 HG02976.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0017 a0001c0001t0004 a0001c0001t0017	a0001c0001t0004g0259 a0001c0001t0004g0260 a0001c0001t0004g0271 others(1): Show a0001c0001t0004g0259 a0001c0001t0004g0260 a0001c0001t0004g0271 a0001c0001t0017g0272	4	282	0.0142	23	c.117 others(42): Show c.1174-1812_1174-1811insTTTTTTTTTTTTTTTTTTTTTTT	NCOR1	ENSG00000141027.23	transcript	ENST00000268712.8	protein_coding	11/45			chr17	TogoVar
NCOR1_chr17_16024157_16220534	16216786	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG01109.hp1 HG02280.hp2 others(3): Show HG00741.hp1 HG01109.hp1 HG02280.hp2 HG02970.hp1 HG03041.hp1 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0008 a0001c0001t0002 a0001c0001t0008	a0001c0001t0002g0011 a0001c0001t0002g0228 a0001c0001t0002g0241 others(3): Show a0001c0001t0002g0011 a0001c0001t0002g0228 a0001c0001t0002g0241 a0001c0001t0008g0018 a0001c0001t0008g0044 a0001c0001t0008g0048	6	282	0.0213	23	c.-14 others(34): Show c.-1496_-1495insTTTTTTTTTTTTTTTTTTTTTTT	NCOR1	ENSG00000141027.23	transcript	ENST00000268712.8	protein_coding		1253		chr17	TogoVar
NCOR2_chr12_124319415_124572612	124468568	T T	TCCTCATC others(16): Show TCCTCATCCTCATCACCCCATCAC	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp1 HG02897.hp2 others(10): Show HG01109.hp1 HG02109.hp1 HG02897.hp2 HG02970.hp1 HG03225.hp1 HG03516.hp2 HG04228.hp2 HG06807.hp2 NA18945.hp1 NA18990.hp2 NA18993.hp2 NA19043.hp2 NA20129.hp2	a0001 a0003 a0011 others(4): Show a0001 a0003 a0011 a0020 a0021 a0037 a0038	a0001c0026 a0001c0086 a0001c0131 others(7): Show a0001c0026 a0001c0086 a0001c0131 a0003c0024 a0011c0014 a0020c0060 a0020c0062 a0021c0158 a0037c0101 a0038c0089	a0001c0026t0027 a0001c0086t0027 a0001c0131t0011 others(8): Show a0001c0026t0027 a0001c0086t0027 a0001c0131t0011 a0003c0024t0003 a0011c0014t0001 a0011c0014t0017 a0020c0060t0027 a0020c0062t0002 a0021c0158t0032 a0037c0101t0065 a0038c0089t0011	a0001c0026t0027g0120 a0001c0086t0027g0174 a0001c0131t0011g0066 others(10): Show a0001c0026t0027g0120 a0001c0086t0027g0174 a0001c0131t0011g0066 a0003c0024t0003g0197 a0003c0024t0003g0198 a0011c0014t0001g0119 a0011c0014t0001g0223 a0011c0014t0017g0055 a0020c0060t0027g0132 a0020c0062t0002g0010 a0021c0158t0032g0023 a0037c0101t0065g0125 a0038c0089t0011g0016	13	234	0.0556	23	c.592 others(40): Show c.592-2283_592-2282insGTGATGGGGTGATGAGGATGAGG	NCOR2	ENSG00000196498.15	transcript	ENST00000405201.6	protein_coding	6/48			chr12	TogoVar
NCOR2_chr12_124319415_124572612	124541030	T T	TGGGGTGG others(16): Show TGGGGTGGAGATGAAGGGGGATGG	intron_variant intron_variant	MODIFIER	HG02300.hp1 HG02300.hp1	a0010 a0010	a0010c0007 a0010c0007	a0010c0007t0034 a0010c0007t0034	a0010c0007t0034g0109 a0010c0007t0034g0109	1	234	0.0043	23	c.-16 others(42): Show c.-164-5442_-164-5420dupCCATCCCCCTTCATCTCCACCCC	NCOR2	ENSG00000196498.15	transcript	ENST00000405201.6	protein_coding	1/48			chr12	TogoVar
NCR1_chr19_54901148_54918073	54904531	C C	CTTTTCTT others(16): Show CTTTTCTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03041.hp1 NA18967.hp2 NA18971.hp1 others(3): Show HG03041.hp1 NA18967.hp2 NA18971.hp1 NA18986.hp2 NA18998.hp2 NA19085.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0003c0004 a0001c0001 a0001c0003 a0003c0004	a0001c0001t0001 a0001c0003t0001 a0003c0004t0006 others(1): Show a0001c0001t0001 a0001c0003t0001 a0003c0004t0006 a0003c0004t0009	a0001c0001t0001g0141 a0001c0003t0001g0109 a0003c0004t0006g0007 others(2): Show a0001c0001t0001g0141 a0001c0003t0001g0109 a0003c0004t0006g0007 a0003c0004t0006g0041 a0003c0004t0009g0103	6	457	0.0131	23	c.-16 others(34): Show c.-1657_-1656insTTTTCTTTTTTTTTTTTTTTTTT	NCR1	ENSG00000189430.13	transcript	ENST00000291890.9	protein_coding		1616		chr19	TogoVar
NCR1_chr19_54901148_54918073	54916317	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01175.hp2 HG03239.hp2 HG03927.hp2 HG01175.hp2 HG03239.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0057 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0057	3	457	0.0066	23	c.34 others(34): Show c.3446_*3447insTTTTTTTTTTTTTTTTTTTTTTT	NCR1	ENSG00000189430.13	transcript	ENST00000291890.9	protein_coding		3245		chr19	TogoVar
NCR3LG1_chr11_17346800_17382341	17353418	A A	ACTGCGGT others(16): Show ACTGCGGTCTGGAAACGCCTGTCG	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03041.hp2 NA18906.hp2 HG02258.hp2 HG03041.hp2 NA18906.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0016 a0004c0007t0016	a0004c0007t0016g0031 a0004c0007t0016g0169 a0004c0007t0016g0031 a0004c0007t0016g0169	3	380	0.0079	23	c.70+ others(38): Show c.70+1399_70+1421dupGTCGCTGCGGTCTGGAAACGCCT	NCR3LG1	ENSG00000188211.9	transcript	ENST00000338965.9	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr11	TogoVar
NCSTN_chr1_160338383_160363949	160359170	A A	ATTTTTTT others(16): Show ATTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00639.hp1 HG03017.hp1 HG03834.hp1 others(1): Show HG00639.hp1 HG03017.hp1 HG03834.hp1 NA18974.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0076 a0001c0001t0001g0089 a0001c0001t0001g0103 others(1): Show a0001c0001t0001g0076 a0001c0001t0001g0089 a0001c0001t0001g0103 a0001c0001t0001g0116	4	448	0.0089	23	c.89 others(32): Show c.899_*900insTTTTTTTTTTTTTTTTTTTTTTT	NCSTN	ENSG00000162736.18	transcript	ENST00000294785.10	protein_coding		222		chr1	TogoVar
NDFIP2_chr13_79476155_79561077	79517408	T T	TTACTCTC others(16): Show TTACTCTCAAGTAGAATTGTCTAA	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02615.hp1 HG03471.hp2 HG02572.hp1 HG02615.hp1 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0019 a0001c0001t0004 a0001c0001t0019	a0001c0001t0004g0134 a0001c0001t0004g0136 a0001c0001t0019g0135 a0001c0001t0004g0134 a0001c0001t0004g0136 a0001c0001t0019g0135	3	286	0.0105	23	c.322 others(40): Show c.322-3400_322-3399insCTCTCAAGTAGAATTGTCTAATA	NDFIP2	ENSG00000102471.16	transcript	ENST00000218652.12	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
NDRG3_chr20_36646771_36751090	36712587	A A	ATATATAT others(16): Show ATATATATATATATATATTTTTTT	intron_variant intron_variant	MODIFIER	NA19056.hp2 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0255 a0001c0001t0001g0255	1	298	0.0034	23	c.58- others(38): Show c.58-5581_58-5580insAAAAAAATATATATATATATATA	NDRG3	ENSG00000101079.21	transcript	ENST00000349004.6	protein_coding	2/15			chr20	TogoVar
NDST3_chr4_118029486_118263634	118085625	C C	CATTGTTG others(16): Show CATTGTTGGGTAACAACAATGAAT	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0109 a0001c0005t0001g0109	1	216	0.0046	23	c.982 others(42): Show c.982-19377_982-19355dupCAATGAATATTGTTGGGTAACAA	NDST3	ENSG00000164100.9	transcript	ENST00000296499.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr4	TogoVar
NDST4_chr4_114822763_115118620	114933432	C C	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTCCTTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00609.hp2 HG00621.hp1 others(21): Show HG00323.hp1 HG00609.hp2 HG00621.hp1 HG02074.hp1 HG02135.hp1 HG02135.hp2 HG02257.hp1 HG02559.hp2 HG03017.hp2 NA18747.hp1 NA18941.hp2 NA18945.hp1 NA18957.hp1 NA18959.hp1 NA18982.hp2 NA18984.hp2 NA18992.hp2 NA18995.hp1 NA18995.hp2 NA18999.hp1 NA19060.hp2 NA19063.hp2 NA19075.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 a0001c0001 a0001c0002 a0001c0006	a0001c0001t0001 a0001c0002t0001 a0001c0006t0001 a0001c0001t0001 a0001c0002t0001 a0001c0006t0001	a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0056 others(21): Show a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0056 a0001c0001t0001g0100 a0001c0001t0001g0112 a0001c0001t0001g0147 a0001c0001t0001g0172 a0001c0001t0001g0182 a0001c0002t0001g0028 a0001c0002t0001g0039 a0001c0002t0001g0045 a0001c0002t0001g0057 a0001c0002t0001g0062 a0001c0002t0001g0074 a0001c0002t0001g0117 a0001c0002t0001g0134 a0001c0002t0001g0144 a0001c0002t0001g0164 a0001c0002t0001g0174 a0001c0002t0001g0175 a0001c0002t0001g0176 a0001c0002t0001g0177 a0001c0002t0001g0179 a0001c0006t0001g0183	24	190	0.1263	23	c.153 others(42): Show c.1536+1773_1536+1774insAAAGGAAAAAAAAAAAAAAAAAA	NDST4	ENSG00000138653.10	transcript	ENST00000264363.7	protein_coding	6/13			chr4	TogoVar
NDST4_chr4_114822763_115118620	114986832	A A	ATATATAT others(16): Show ATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	NA18964.hp2 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0135 a0001c0001t0001g0135	1	190	0.0053	23	c.979 others(40): Show c.979-9559_979-9558insAAAAATATATATATATATATATA	NDST4	ENSG00000138653.10	transcript	ENST00000264363.7	protein_coding	2/13			chr4	TogoVar

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