Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LEO1_chr15_51933025_51976778	51934711	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	388	0.0026	24	c.34 others(35): Show c.3444_*3445insTTTTTTTTTTTTTTTTTTTTTTTT	LEO1	ENSG00000166477.13	transcript	ENST00000299601.10	protein_coding		3313		chr15	TogoVar
LEO1_chr15_51933025_51976778	51961352	A A	AGGTGGTG others(17): Show AGGTGGTGGTGGTGGTGGTGGTGGT	intron_variant intron_variant	MODIFIER	HG00423.hp2 NA18906.hp2 NA18946.hp1 HG00423.hp2 NA18906.hp2 NA18946.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0294 a0001c0002t0001g0304 a0001c0002t0001g0307 a0001c0002t0001g0294 a0001c0002t0001g0304 a0001c0002t0001g0307	3	388	0.0077	24	c.920 others(39): Show c.920-643_920-620dupACCACCACCACCACCACCACCACC	LEO1	ENSG00000166477.13	transcript	ENST00000299601.10	protein_coding	3/11			chr15	TogoVar
LEPROT_chr1_65415668_65441007	65417065	C C	CATATATA others(17): Show CATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01169.hp2 HG01346.hp1 HG02083.hp1 others(3): Show HG01169.hp2 HG01346.hp1 HG02083.hp1 HG02559.hp1 HG02698.hp1 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0022 a0001c0002t0003	a0001c0001t0001g0017 a0001c0001t0003g0003 a0001c0001t0004g0040 others(2): Show a0001c0001t0001g0017 a0001c0001t0003g0003 a0001c0001t0004g0040 a0001c0001t0022g0059 a0001c0002t0003g0005	6	402	0.0149	24	c.-36 others(35): Show c.-3660_-3659insATATATATATATATATATATATAT	LEPROT	ENSG00000213625.9	transcript	ENST00000371065.9	protein_coding		3602		chr1	TogoVar
LEPR_chr1_65415668_65646559	65417065	C C	CATATATA others(17): Show CATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp1 HG02698.hp1 HG02809.hp2 HG02559.hp1 HG02698.hp1 HG02809.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0003c0004 a0005c0007 a0001c0001 a0003c0004 a0005c0007	a0001c0001t0003 a0003c0004t0006 a0005c0007t0003 a0001c0001t0003 a0003c0004t0006 a0005c0007t0003	a0001c0001t0003g0006 a0003c0004t0006g0003 a0005c0007t0003g0092 a0001c0001t0003g0006 a0003c0004t0006g0003 a0005c0007t0003g0092	3	216	0.0139	24	c.-37 others(35): Show c.-3772_-3771insATATATATATATATATATATATAT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding		3602		chr1	TogoVar
LEPR_chr1_65415668_65646559	65472411	A A	AACACACA others(17): Show AACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0021 a0003c0006t0021	a0003c0006t0021g0079 a0003c0006t0021g0079	1	216	0.0046	24	c.-21 others(43): Show c.-21+47044_-21+47067dupACACACACACACACACACACACAC	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488141	C C	CTCCTTCC others(17): Show CTCCTTCCTTCCTTCCTTCCTTCCT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0003 a0003	a0003c0011 a0003c0011	a0003c0011t0026 a0003c0011t0026	a0003c0011t0026g0105 a0003c0011t0026g0105	1	216	0.0046	24	c.-21 others(43): Show c.-21+62784_-21+62785insCCTTCCTTCCTTCCTTCCTTCCTT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488159	C C	CCTTCCTT others(17): Show CCTTCCTTCCTTCCTTCCTTCCTTT	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0008 a0001c0008t0008	a0001c0008t0008g0120 a0001c0008t0008g0120	1	216	0.0046	24	c.-21 others(43): Show c.-21+62784_-21+62785insCCTTCCTTCCTTCCTTCCTTTCTT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488210	T T	TTCTTTCT others(17): Show TTCTTTCTTTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	NA19081.hp2 NA19081.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0032 a0003c0005t0032	a0003c0005t0032g0007 a0003c0005t0032g0007	1	216	0.0046	24	c.-21 others(43): Show c.-21+62835_-21+62836insTTCTTTCTCTCTCTCTCTCTCTCT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488212	C C	CTTTCTTT others(17): Show CTTTCTTTCTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0100 a0001c0001t0003g0100	1	216	0.0046	24	c.-21 others(43): Show c.-21+62835_-21+62836insTTCTTTCTCTTTCTTTCTTTCTTT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65488226	C C	CTCTCTCT others(17): Show CTCTCTCTCTCTCTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG02735.hp1 NA18972.hp1 HG02735.hp1 NA18972.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0003 a0003c0005t0049 a0001c0001t0003 a0003c0005t0049	a0001c0001t0003g0012 a0003c0005t0049g0118 a0001c0001t0003g0012 a0003c0005t0049g0118	2	216	0.0093	24	c.-21 others(43): Show c.-21+62851_-21+62852insCTCTCTCTCTCTTTCTTTCTTTCT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEXM_chr1_54801063_54847252	54819812	T T	TTTTCTTT others(17): Show TTTTCTTTCTCTTTCTTTCTTTTTC	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0222 a0001c0003t0003g0222	1	382	0.0026	24	c.118 others(43): Show c.1184+2699_1184+2700insCTTTCTTTCTTTTTCTTTCTTTCT	LEXM	ENSG00000162398.12	transcript	ENST00000371273.4	protein_coding	9/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
LFNG_chr7_2514774_2533429	2531661	G G	GCACACGC others(17): Show GCACACGCACAGGCGCGCACACACC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00738.hp1 HG01069.hp2 HG01070.hp1 others(14): Show HG00738.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp1 HG01099.hp2 HG01106.hp2 HG01255.hp1 HG01261.hp2 HG01346.hp2 HG01433.hp2 HG01943.hp2 HG01952.hp2 HG01975.hp1 HG01978.hp2 HG01993.hp2 HG02300.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0003 a0001c0003t0003 a0001c0001t0001 a0001c0001t0003 a0001c0003t0003	a0001c0001t0001g0014 a0001c0001t0003g0005 a0001c0001t0003g0037 others(3): Show a0001c0001t0001g0014 a0001c0001t0003g0005 a0001c0001t0003g0037 a0001c0001t0003g0082 a0001c0003t0003g0005 a0001c0003t0003g0051	17	414	0.0411	24	c.44 others(35): Show c.4449_*4450insCACACGCACAGGCGCGCACACACC	LFNG	ENSG00000106003.14	transcript	ENST00000222725.10	protein_coding		3233		chr7	TogoVar
LFNG_chr7_2514774_2533429	2531661	G G	GCACACGC others(17): Show GCACACGCACAGGTGCGCACACACC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18747.hp2 NA18747.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0005 a0001c0001t0003g0005	1	414	0.0024	24	c.44 others(35): Show c.4449_*4450insCACACGCACAGGTGCGCACACACC	LFNG	ENSG00000106003.14	transcript	ENST00000222725.10	protein_coding		3233		chr7	TogoVar
LFNG_chr7_2514774_2533429	2531677	G G	GCACACAC others(17): Show GCACACACCCACACGCACGAGCGCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp2 HG01891.hp1 HG02258.hp1 others(15): Show HG01192.hp2 HG01891.hp1 HG02258.hp1 HG02280.hp2 HG02486.hp1 HG02559.hp1 HG02717.hp2 HG02723.hp2 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02970.hp1 HG03041.hp1 HG03209.hp1 HG03209.hp2 HG03516.hp2 NA18906.hp1 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0006 a0001c0001 a0002c0006	a0001c0001t0001 a0001c0001t0006 a0002c0006t0001 a0001c0001t0001 a0001c0001t0006 a0002c0006t0001	a0001c0001t0001g0001 a0001c0001t0001g0023 a0001c0001t0001g0026 others(9): Show a0001c0001t0001g0001 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0036 a0001c0001t0001g0053 a0001c0001t0001g0061 a0001c0001t0001g0077 a0001c0001t0001g0099 a0001c0001t0006g0055 a0001c0001t0006g0073 a0002c0006t0001g0001	18	414	0.0435	24	c.44 others(35): Show c.4465_*4466insCACACACCCACACGCACGAGCGCA	LFNG	ENSG00000106003.14	transcript	ENST00000222725.10	protein_coding		3249		chr7	TogoVar
LGALS16_chr19_39650913_39665647	39663851	T T	TACATATA others(17): Show TACATATATATGTATGTATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03540.hp2 NA19066.hp1 HG03540.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0029 a0001c0001t0001g0002 a0001c0001t0001g0029	2	442	0.0045	24	c.33 others(35): Show c.3331_*3332insACATATATATGTATGTATATATAC	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3205		chr19	TogoVar
LGALS2_chr22_37565248_37585087	37565461	G G	GCTCAATG others(17): Show GCTCAATGAATTATTTGTCCCCTAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19085.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	460	0.0022	24	c.47 others(35): Show c.4778_*4801dupATAGGGGACAAATAATTCATTGAG	LGALS2	ENSG00000100079.7	transcript	ENST00000215886.6	protein_coding		4786		chr22	TogoVar
LGMN_chr14_92698809_92753627	92719320	G G	GCCGCCAC others(17): Show GCCGCCACCGCCGCCGCCGCCGCCA	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03834.hp1 HG03688.hp1 HG03834.hp1	a0004 a0004	a0004c0011 a0004c0011	a0004c0011t0001 a0004c0011t0001	a0004c0011t0001g0009 a0004c0011t0001g0010 a0004c0011t0001g0009 a0004c0011t0001g0010	2	420	0.0048	24	c.139 others(39): Show c.139-477_139-476insTGGCGGCGGCGGCGGCGGTGGCGG	LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	2/13			chr14	TogoVar
LGR4_chr11_27360961_27477790	27467566	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02647.hp1 HG02559.hp2 HG02647.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0014 a0001c0005t0014	a0001c0005t0014g0149 a0001c0005t0014g0154 a0001c0005t0014g0149 a0001c0005t0014g0154	2	244	0.0082	24	c.185 others(41): Show c.185+4551_185+4552insTTTTTTTTTTTTTTTTTTTTTTTT	LGR4	ENSG00000205213.14	transcript	ENST00000379214.9	protein_coding	1/17			chr11	TogoVar
LGR5_chr12_71434798_71591310	71548301	C C	CTGTGTGT others(17): Show CTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02486.hp2 HG03490.hp2 HG01192.hp1 HG02486.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0012 a0001c0001t0001 a0001c0001t0002 a0001c0002t0012	a0001c0001t0001g0180 a0001c0001t0002g0029 a0001c0002t0012g0006 a0001c0001t0001g0180 a0001c0001t0002g0029 a0001c0002t0012g0006	3	200	0.0150	24	c.429 others(41): Show c.429-4771_429-4748dupTGTGTGTGTGTGTGTGTGTGTGTG	LGR5	ENSG00000139292.13	transcript	ENST00000266674.10	protein_coding	4/17		INFO_REALIGN_3_PRIME	chr12	TogoVar
LGR5_chr12_71434798_71591310	71565422	C C	CTATATAT others(17): Show CTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0107 a0001c0002t0002g0107	1	200	0.0050	24	c.858 others(39): Show c.858-960_858-959insTATATATATATATATATATATATA	LGR5	ENSG00000139292.13	transcript	ENST00000266674.10	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr12	TogoVar
LHFPL2_chr5_78480230_78653772	78544752	T T	TACACACA others(17): Show TACACACACACACACACACGTATAC	intron_variant intron_variant	MODIFIER	HG03139.hp1 NA19030.hp2 HG03139.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0087 a0001c0001t0001g0088	2	254	0.0079	24	c.-18 others(45): Show c.-186+20037_-186+20060dupGTATACGTGTGTGTGTGTGTGTGT	LHFPL2	ENSG00000145685.14	transcript	ENST00000380345.7	protein_coding	3/4			chr5	TogoVar
LHFPL2_chr5_78480230_78653772	78651583	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp2 HG01928.hp2 HG02922.hp2 others(2): Show HG00609.hp2 HG01928.hp2 HG02922.hp2 NA18955.hp2 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0008 a0001c0002t0002 a0001c0001t0001 a0001c0001t0008 a0001c0002t0002	a0001c0001t0001g0010 a0001c0001t0001g0050 a0001c0001t0001g0076 others(2): Show a0001c0001t0001g0010 a0001c0001t0001g0050 a0001c0001t0001g0076 a0001c0001t0008g0244 a0001c0002t0002g0045	5	254	0.0197	24	c.-34 others(35): Show c.-3458_-3435dupTTTTTTTTTTTTTTTTTTTTTTTT	LHFPL2	ENSG00000145685.14	transcript	ENST00000380345.7	protein_coding		2812		chr5	TogoVar
LHFPL3_chr7_104323603_104913561	104365787	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0080 a0001c0001t0002g0080	1	86	0.0116	24	c.445 others(43): Show c.445+36581_445+36582insAAAAAAAAAAAAAAAAAAAAAAAA	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104585480	A A	AACACACA others(17): Show AACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0072 a0001c0001t0001g0072	1	86	0.0116	24	c.446 others(45): Show c.446-151176_446-151153dupACACACACACACACACACACACAC	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104614653	C C	CTCCTTCC others(17): Show CTCCTTCCTTCCTTCCTTCCTTCCT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0043	1	86	0.0116	24	c.446 others(45): Show c.446-122015_446-121992dupCTTCCTTCCTTCCTTCCTTCCTTC	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL3_chr7_104323603_104913561	104666512	C C	CTTTTTTT others(17): Show CTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0035 a0001c0001t0009g0035	1	86	0.0116	24	c.446 others(43): Show c.446-70159_446-70136dupTTTTTTTTTTTTTTTTTTTTTTTT	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL4_chr3_9493361_9558822	9556116	T T	TCACACAC others(17): Show TCACACACACACACACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0039 a0001c0001t0002g0039	1	360	0.0028	24	c.-26 others(35): Show c.-2601_-2600insTGTGTGTGTGTGTGTGTGTGTGTG	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		2295		chr3	TogoVar
LHFPL4_chr3_9493361_9558822	9556778	G G	GAGAGAGA others(17): Show GAGAGAGAAAGAAAGAAAGAAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01123.hp2 HG01167.hp1 HG01123.hp2 HG01167.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0031 a0001c0001t0014 a0001c0001t0031	a0001c0001t0014g0155 a0001c0001t0031g0346 a0001c0001t0014g0155 a0001c0001t0031g0346	2	360	0.0056	24	c.-32 others(35): Show c.-3263_-3262insTTCTTTCTTTCTTTCTTTCTCTCT	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		2957		chr3	TogoVar
LHFPL4_chr3_9493361_9558822	9557420	G G	GGAAAGAA others(17): Show GGAAAGAAAGAAAGAAAGAAAGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG01975.hp2 HG02630.hp2 others(10): Show HG00423.hp1 HG01975.hp2 HG02630.hp2 HG03239.hp1 HG03239.hp2 NA18952.hp1 NA18968.hp2 NA18969.hp2 NA18973.hp1 NA18997.hp2 NA19005.hp2 NA19058.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0029	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0174 others(10): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0174 a0001c0001t0001g0195 a0001c0001t0001g0221 a0001c0001t0001g0232 a0001c0001t0001g0256 a0001c0001t0001g0314 a0001c0001t0004g0240 a0001c0001t0005g0224 a0001c0001t0005g0228 a0001c0001t0005g0263 a0001c0001t0029g0266	13	360	0.0361	24	c.-39 others(35): Show c.-3905_-3904insTTTCTTTCTTTCTTTCTTTCTTTC	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		3599		chr3	TogoVar
LHFPL4_chr3_9493361_9558822	9557471	A A	AAGAAAGA others(17): Show AAGAAAGAAAGAAAGAAAGAAAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0207 a0001c0001t0001g0207	1	360	0.0028	24	c.-39 others(35): Show c.-3956_-3955insCTCTTTCTTTCTTTCTTTCTTTCT	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		3650		chr3	TogoVar
LHFPL4_chr3_9493361_9558822	9557493	G G	GAGAAAGA others(17): Show GAGAAAGAAAGAAAGAAAGAAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG03540.hp2 HG02145.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0027 a0001c0001t0020 a0001c0001t0027	a0001c0001t0020g0230 a0001c0001t0027g0320 a0001c0001t0020g0230 a0001c0001t0027g0320	2	360	0.0056	24	c.-39 others(35): Show c.-3978_-3977insTTCTTTCTTTCTTTCTTTCTTTCT	LHFPL4	ENSG00000156959.9	transcript	ENST00000287585.8	protein_coding		3672		chr3	TogoVar
LHFPL5_chr6_35800352_35829070	35818320	C C	CATATATA others(17): Show CATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0027 a0001c0001t0020g0027	1	386	0.0026	24	c.650 others(41): Show c.650-1112_650-1089dupATATATATATATATATATATATAT	LHFPL5	ENSG00000197753.11	transcript	ENST00000360215.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LHFPL6_chr13_39337892_39608193	39369567	T T	TTTCCTTC others(17): Show TTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02559.hp2 NA18964.hp1 HG02451.hp2 HG02559.hp2 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0012 a0001c0002t0003 a0001c0001t0003 a0001c0001t0012 a0001c0002t0003	a0001c0001t0003g0203 a0001c0001t0012g0206 a0001c0002t0003g0016 a0001c0001t0003g0203 a0001c0001t0012g0206 a0001c0002t0003g0016	3	242	0.0124	24	c.484 others(41): Show c.484+8837_484+8860dupGGAAGGAAGGAAGGAAGGAAGGAA	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	3/3			chr13	TogoVar
LHFPL6_chr13_39337892_39608193	39369597	T T	TCCTTCCT others(17): Show TCCTTCCTTCCTTCCTTCCTTCCTC	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG03579.hp2 HG01981.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0038 a0001c0001t0008g0229 a0001c0001t0008g0038 a0001c0001t0008g0229	2	242	0.0083	24	c.484 others(41): Show c.484+8830_484+8831insGAGGAAGGAAGGAAGGAAGGAAGG	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	3/3			chr13	TogoVar
LHFPL6_chr13_39337892_39608193	39562361	C C	CATATACA others(17): Show CATATACATATATACATATACATAT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00621.hp1 HG01109.hp2 others(16): Show HG00438.hp2 HG00621.hp1 HG01109.hp2 HG02074.hp1 HG02074.hp2 HG02129.hp1 HG02132.hp2 HG02559.hp2 NA18612.hp1 NA18975.hp2 NA18978.hp1 NA18984.hp1 NA18999.hp2 NA19003.hp1 NA19063.hp1 NA19082.hp2 NA19084.hp2 NA19087.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0015 a0001c0005t0005	a0001c0001t0002g0042 a0001c0001t0002g0043 a0001c0001t0002g0046 others(16): Show a0001c0001t0002g0042 a0001c0001t0002g0043 a0001c0001t0002g0046 a0001c0001t0002g0062 a0001c0001t0002g0149 a0001c0001t0002g0155 a0001c0001t0003g0053 a0001c0001t0003g0056 a0001c0001t0003g0203 a0001c0001t0004g0050 a0001c0001t0004g0051 a0001c0001t0005g0044 a0001c0001t0005g0049 a0001c0001t0005g0063 a0001c0001t0005g0064 a0001c0001t0006g0048 a0001c0001t0008g0231 a0001c0001t0015g0047 a0001c0005t0005g0052	19	242	0.0785	24	c.385 others(43): Show c.385+38470_385+38471insATATGTATATGTATATATGTATAT	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3			chr13	TogoVar
LHFPL6_chr13_39337892_39608193	39562417	C C	CATATACA others(17): Show CATATACATATATACATATATACAT	intron_variant intron_variant	MODIFIER	HG00438.hp1 NA19030.hp2 HG00438.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0001 a0001c0001t0018	a0001c0001t0001g0112 a0001c0001t0018g0238 a0001c0001t0001g0112 a0001c0001t0018g0238	2	242	0.0083	24	c.385 others(43): Show c.385+38391_385+38414dupATGTATATATGTATATATGTATAT	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3			chr13	TogoVar
LHFPL6_chr13_39337892_39608193	39569148	T T	TGGATGGA others(17): Show TGGATGGACGGACGGACGGACGGAC	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00544.hp1 HG00735.hp1 others(18): Show HG00408.hp2 HG00544.hp1 HG00735.hp1 HG01934.hp1 HG02145.hp1 HG02723.hp1 HG02818.hp1 HG02895.hp2 HG03098.hp1 HG03209.hp2 HG03540.hp1 HG03579.hp1 NA18612.hp2 NA18942.hp1 NA18949.hp1 NA18979.hp1 NA18981.hp1 NA18983.hp1 NA18988.hp2 NA19066.hp1 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0020 a0001c0002t0007	a0001c0001t0001g0142 a0001c0001t0001g0191 a0001c0001t0002g0192 others(18): Show a0001c0001t0001g0142 a0001c0001t0001g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0196 a0001c0001t0003g0041 a0001c0001t0004g0144 a0001c0001t0004g0190 a0001c0001t0004g0194 a0001c0001t0004g0195 a0001c0001t0004g0198 a0001c0001t0006g0123 a0001c0001t0006g0125 a0001c0001t0006g0189 a0001c0001t0006g0199 a0001c0001t0006g0230 a0001c0001t0008g0122 a0001c0001t0009g0234 a0001c0001t0011g0124 a0001c0001t0020g0003 a0001c0002t0007g0005	21	242	0.0868	24	c.385 others(43): Show c.385+31683_385+31684insGTCCGTCCGTCCGTCCGTCCATCC	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3			chr13	TogoVar
LHFPL7_chr22_24930098_24951694	24940636	C C	CCCTTCCT others(17): Show CCCTTCCTTCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00741.hp1 HG01069.hp2 others(36): Show HG00423.hp2 HG00741.hp1 HG01069.hp2 HG01106.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp1 HG01361.hp2 HG01496.hp1 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG02145.hp2 HG02258.hp2 HG02683.hp1 HG02735.hp2 HG02809.hp1 HG02922.hp2 HG03098.hp1 HG03471.hp1 HG03516.hp1 HG03540.hp1 HG03704.hp1 HG04115.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp2 NA18940.hp1 NA18942.hp1 NA18944.hp2 NA18946.hp1 NA18979.hp1 NA18982.hp2 NA18994.hp2 NA19003.hp2 NA19078.hp2 NA19084.hp1 NA19090.hp1 NA20752.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0003 a0001c0001t0001 a0004c0004t0003	a0001c0001t0001g0003 a0001c0001t0001g0026 a0001c0001t0001g0054 others(24): Show a0001c0001t0001g0003 a0001c0001t0001g0026 a0001c0001t0001g0054 a0001c0001t0001g0063 a0001c0001t0001g0067 a0001c0001t0001g0092 a0001c0001t0001g0183 a0001c0001t0001g0190 a0001c0001t0001g0194 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0209 a0001c0001t0001g0212 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0230 a0001c0001t0001g0237 a0001c0001t0001g0254 a0001c0001t0001g0275 a0001c0001t0001g0279 a0001c0001t0001g0287 a0001c0001t0001g0290 a0001c0001t0001g0291 a0001c0001t0001g0292 a0004c0004t0003g0017 a0004c0004t0003g0064 a0004c0004t0003g0065	39	420	0.0929	24	c.-17 others(41): Show c.-17-1108_-17-1085dupAAGGAAGGAAGGAAGGAAGGAAGG	LHFPL7	ENSG00000206069.7	transcript	ENST00000640159.2	protein_coding	1/3			chr22	TogoVar
LHPP_chr10_124456823_124619141	124457219	T T	TTTTCTTT others(17): Show TTTTCTTTCTTTCTTTCTTTCTTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0108 a0001c0001t0001g0108	1	260	0.0039	24	c.-46 others(35): Show c.-4644_-4643insTTTCTTTCTTTCTTTCTTTCTTTC	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding		4603		chr10	TogoVar
LHPP_chr10_124456823_124619141	124506650	A A	AGGGTAGG others(17): Show AGGGTAGGGAGGATTTCAGGTTGGG	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0254 a0001c0001t0001g0254	1	260	0.0039	24	c.624 others(41): Show c.624+8532_624+8555dupGGATTTCAGGTTGGGGGGTAGGGA	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124506733	G G	GGATTTCA others(17): Show GGATTTCAGGTTGGGGGGTAGGGAA	intron_variant intron_variant	MODIFIER	HG03041.hp1 NA19043.hp2 HG03041.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0243 a0001c0001t0001g0194 a0001c0001t0001g0243	2	260	0.0077	24	c.624 others(41): Show c.624+8613_624+8636dupGGTTGGGGGGTAGGGAAGATTTCA	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124506890	T T	TGGGGGGT others(17): Show TGGGGGGTAGACAGGATTTCAGGTG	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA19057.hp2 NA18951.hp1 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0159 a0001c0001t0001g0238 a0001c0001t0001g0159 a0001c0001t0001g0238	2	260	0.0077	24	c.624 others(41): Show c.624+8771_624+8772insACAGGATTTCAGGTGGGGGGGTAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124506925	C C	CAGGATTT others(17): Show CAGGATTTCAGGTGGGGGGGTAGGG	intron_variant intron_variant	MODIFIER	NA18951.hp2 NA18951.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0160 a0001c0001t0001g0160	1	260	0.0039	24	c.624 others(41): Show c.624+8813_624+8836dupGGGGTAGGGAGGATTTCAGGTGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124506962	G G	GGGGGGGT others(17): Show GGGGGGGTAGGGAGGATTTCAGGTT	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	260	0.0039	24	c.624 others(41): Show c.624+8836_624+8837insGGGGTAGGGAGGATTTCAGGTTGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124506973	C C	CAGGATTT others(17): Show CAGGATTTCAGGTGGGGGGGTAGGG	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0252 a0001c0001t0001g0252	1	260	0.0039	24	c.624 others(41): Show c.624+8858_624+8859insGGGGGGTAGGGAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507036	A A	AGCGGGGT others(17): Show AGCGGGGTAGGGAGGATTTCAGGTG	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA19057.hp2 NA18951.hp1 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0159 a0001c0001t0001g0238 a0001c0001t0001g0159 a0001c0001t0001g0238	2	260	0.0077	24	c.624 others(41): Show c.624+8909_624+8910insCGGGGTAGGGAGGATTTCAGGTGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507060	G G	GGGGGGGT others(17): Show GGGGGGGTAGGGAGGATTTCAGGTC	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03041.hp1 HG02965.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0142 a0001c0001t0001g0194 a0001c0001t0001g0142 a0001c0001t0001g0194	2	260	0.0077	24	c.624 others(41): Show c.624+8932_624+8933insGGGGGGTAGGGAGGATTTCAGGTC	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507139	T T	TAGGGAGG others(17): Show TAGGGAGGATTTCAGGTGAGGGGGG	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0042 a0001c0001t0010g0042	1	260	0.0039	24	c.624 others(41): Show c.624+9011_624+9012insAGGGAGGATTTCAGGTGAGGGGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507234	A A	AGGGTAGA others(17): Show AGGGTAGACAGGATTTCAGGTGGGG	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00408.hp2 HG00639.hp2 others(30): Show HG00140.hp2 HG00408.hp2 HG00639.hp2 HG00735.hp2 HG01069.hp2 HG01081.hp2 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01257.hp1 HG01261.hp1 HG01884.hp2 HG02055.hp1 HG02135.hp2 HG02165.hp2 HG02257.hp1 HG02280.hp2 HG02451.hp1 HG02698.hp1 HG03209.hp2 HG03490.hp2 HG03669.hp2 HG03688.hp2 HG04228.hp2 HG06807.hp1 NA18522.hp1 NA18906.hp2 NA18942.hp2 NA18961.hp2 NA19000.hp2 NA19011.hp1 NA19074.hp2 NA19081.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0006 a0001c0001 a0002c0002 a0005c0006	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0013 a0001c0001t0015 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0005c0006t0001	a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0016 others(30): Show a0001c0001t0001g0003 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0022 a0001c0001t0001g0036 a0001c0001t0001g0061 a0001c0001t0001g0063 a0001c0001t0001g0067 a0001c0001t0001g0083 a0001c0001t0001g0098 a0001c0001t0001g0107 a0001c0001t0001g0130 a0001c0001t0001g0135 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0175 a0001c0001t0001g0189 a0001c0001t0001g0197 a0001c0001t0001g0204 a0001c0001t0001g0213 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0003g0202 a0001c0001t0003g0207 a0001c0001t0004g0105 a0001c0001t0013g0235 a0001c0001t0015g0195 a0002c0002t0001g0056 a0002c0002t0001g0079 a0002c0002t0001g0209 a0002c0002t0002g0168 a0002c0002t0003g0030 a0005c0006t0001g0245	33	260	0.1269	24	c.624 others(41): Show c.624+9112_624+9113insACAGGATTTCAGGTGGGGGGGTAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507259	G G	GGGTAGGG others(17): Show GGGTAGGGAGGATTTCAGGTGTGGA	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG03239.hp2 HG02735.hp1 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0068 a0001c0001t0001g0190 a0001c0001t0001g0068 a0001c0001t0001g0190	2	260	0.0077	24	c.624 others(41): Show c.624+9133_624+9134insTAGGGAGGATTTCAGGTGTGGAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar

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