Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LHPP_chr10_124456823_124619141	124507259	G G	GGGTAGGG others(17): Show GGGTAGGGAGTATTTCAGGTGTGGA	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG01167.hp2 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0155 a0001c0001t0001g0158 a0001c0001t0001g0155 a0001c0001t0001g0158	2	260	0.0077	24	c.624 others(41): Show c.624+9133_624+9134insTAGGGAGTATTTCAGGTGTGGAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507319	G G	GATTTCAG others(17): Show GATTTCAGGTGGGGGGGTAGGGAGT	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0173 a0001c0001t0004g0173	1	260	0.0039	24	c.624 others(41): Show c.624+9214_624+9215insTATTTCAGGTGGGGGGGTAGGGAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507365	C C	CAGGATTT others(17): Show CAGGATTTCAGGTGGGGGGGTAGGG	intron_variant intron_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0208 a0002c0002t0001g0208	1	260	0.0039	24	c.624 others(41): Show c.624+9255_624+9256insGTAGGGAGGATTTCAGGTGGGGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507389	G G	GAGGATTT others(17): Show GAGGATTTCAGGTTGGGGGGTAGAC	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	260	0.0039	24	c.624 others(41): Show c.624+9263_624+9264insGATTTCAGGTTGGGGGGTAGACAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507399	G G	GGTCGGGG others(17): Show GGTCGGGGGGGTAGACAGGATTTCA	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0190	1	260	0.0039	24	c.624 others(41): Show c.624+9273_624+9274insCGGGGGGGTAGACAGGATTTCAGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507401	T T	TCGGGGGG others(17): Show TCGGGGGGGTAGGGAGGATTTCAGG	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0175	1	260	0.0039	24	c.624 others(41): Show c.624+9273_624+9274insCGGGGGGGTAGGGAGGATTTCAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507402	G G	GAGGGGGG others(17): Show GAGGGGGGTAGGGAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG02165.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0071	1	260	0.0039	24	c.624 others(41): Show c.624+9274_624+9275insAGGGGGGTAGGGAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507402	G G	GTGGAGGG others(17): Show GTGGAGGGTAGACAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG03942.hp1 NA18747.hp1 others(3): Show HG00639.hp1 HG03942.hp1 NA18747.hp1 NA18971.hp1 NA19000.hp1 NA19004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0019 a0001c0001t0001g0057 a0001c0001t0001g0119 others(3): Show a0001c0001t0001g0019 a0001c0001t0001g0057 a0001c0001t0001g0119 a0001c0001t0001g0149 a0001c0001t0001g0164 a0001c0001t0003g0076	6	260	0.0231	24	c.624 others(41): Show c.624+9274_624+9275insTGGAGGGTAGACAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507402	G G	GTGGGGGG others(17): Show GTGGGGGGTAGACAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0042 a0001c0001t0010g0042	1	260	0.0039	24	c.624 others(41): Show c.624+9274_624+9275insTGGGGGGTAGACAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507431	A A	AGGGTAGA others(17): Show AGGGTAGACAGGATTTCAGGTGGGG	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0094 a0001c0001t0001g0094	1	260	0.0039	24	c.624 others(41): Show c.624+9306_624+9329dupGTAGACAGGATTTCAGGTGGGGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507439	C C	CAGGATTT others(17): Show CAGGATTTCAGGTGGGGGGGTAGGG	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0013 a0003c0003t0002g0013	1	260	0.0039	24	c.624 others(41): Show c.624+9329_624+9330insGTAGGGAGGATTTCAGGTGGGGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507442	G G	GATTTCAG others(17): Show GATTTCAGGTGGGGGGGTAGGGAGT	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0173 a0001c0001t0004g0173	1	260	0.0039	24	c.624 others(41): Show c.624+9329_624+9330insGTAGGGAGTATTTCAGGTGGGGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507454	G G	GGGGGTAG others(17): Show GGGGGTAGGGAGGATTTCAGGTGGT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02895.hp2 HG02615.hp1 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0210 a0001c0001t0001g0211 a0001c0001t0001g0210 a0001c0001t0001g0211	2	260	0.0077	24	c.624 others(41): Show c.624+9329_624+9330insGTAGGGAGGATTTCAGGTGGTGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507458	A A	ATAGGGAG others(17): Show ATAGGGAGTATTTCAGGTGGGGGGG	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG03669.hp1 HG04199.hp2 HG00408.hp1 HG03669.hp1 HG04199.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0031 a0002c0002t0001g0058 a0002c0002t0001g0151 a0002c0002t0001g0031 a0002c0002t0001g0058 a0002c0002t0001g0151	3	260	0.0115	24	c.624 others(41): Show c.624+9337_624+9338insTATTTCAGGTGGGGGGGTAGGGAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507524	T T	TCGGGGGG others(17): Show TCGGGGGGGTAGACAGGATTTCAGG	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG03239.hp2 HG02897.hp1 HG03239.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0002 a0001c0001t0001 a0003c0003t0002	a0001c0001t0001g0190 a0003c0003t0002g0013 a0001c0001t0001g0190 a0003c0003t0002g0013	2	260	0.0077	24	c.624 others(41): Show c.624+9396_624+9397insCGGGGGGGTAGACAGGATTTCAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507524	T T	TCGGGGGG others(17): Show TCGGGGGGGTAGGGAGGATTTCAGG	intron_variant intron_variant	MODIFIER	HG01258.hp2 HG01943.hp1 HG01258.hp2 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0055 a0001c0001t0001g0161 a0001c0001t0001g0055 a0001c0001t0001g0161	2	260	0.0077	24	c.624 others(41): Show c.624+9396_624+9397insCGGGGGGGTAGGGAGGATTTCAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507525	G G	GAGGGGGG others(17): Show GAGGGGGGTAGGGAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0042 a0001c0001t0010g0042	1	260	0.0039	24	c.624 others(41): Show c.624+9397_624+9398insAGGGGGGTAGGGAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507525	G G	GGGGGGGG others(17): Show GGGGGGGGTAGGGAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01123.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0050 a0001c0001t0001g0050	1	260	0.0039	24	c.624 others(41): Show c.624+9400_624+9401insGGGGTAGGGAGGATTTCAGGTGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507525	G G	GTGGAGGG others(17): Show GTGGAGGGTAGACAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01981.hp2 HG03490.hp1 others(7): Show HG00323.hp2 HG01981.hp2 HG03490.hp1 NA18962.hp2 NA18966.hp2 NA18969.hp1 NA18990.hp1 NA19057.hp2 NA19065.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0001 a0001c0001t0018	a0001c0001t0001g0073 a0001c0001t0001g0143 a0001c0001t0001g0144 others(7): Show a0001c0001t0001g0073 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0187 a0001c0001t0001g0238 a0001c0001t0001g0253 a0001c0001t0018g0037	10	260	0.0385	24	c.624 others(41): Show c.624+9397_624+9398insTGGAGGGTAGACAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507554	A A	AGGGTAGA others(17): Show AGGGTAGACAGGATTTCAGGTGGGG	intron_variant intron_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0208 a0002c0002t0001g0208	1	260	0.0039	24	c.624 others(41): Show c.624+9429_624+9452dupGTAGACAGGATTTCAGGTGGGGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507599	G G	GGGGGGGG others(17): Show GGGGGGGGTAGGGAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0142 a0001c0001t0001g0142	1	260	0.0039	24	c.624 others(41): Show c.624+9471_624+9472insGGGGGGGTAGGGAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507611	C C	CAGGATTT others(17): Show CAGGATTTCAGGTGGGGGGATAGGG	intron_variant intron_variant	MODIFIER	NA18964.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0084 a0001c0001t0001g0084	1	260	0.0039	24	c.624 others(41): Show c.624+9496_624+9497insGGGGGATAGGGAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507611	C C	CAGGATTT others(17): Show CAGGATTTCAGGTGGGGGGGTAGGG	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00597.hp2 HG01167.hp2 others(8): Show HG00323.hp2 HG00597.hp2 HG01167.hp2 HG02486.hp1 HG02615.hp1 HG02683.hp2 HG02895.hp2 HG03239.hp2 HG03942.hp1 NA19068.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0001 a0001c0001t0018	a0001c0001t0001g0002 a0001c0001t0001g0108 a0001c0001t0001g0149 others(8): Show a0001c0001t0001g0002 a0001c0001t0001g0108 a0001c0001t0001g0149 a0001c0001t0001g0155 a0001c0001t0001g0165 a0001c0001t0001g0190 a0001c0001t0001g0210 a0001c0001t0001g0211 a0001c0001t0001g0218 a0001c0001t0001g0252 a0001c0001t0018g0037	11	260	0.0423	24	c.624 others(41): Show c.624+9496_624+9497insGGGGGGTAGGGAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507624	G G	GGGGGGGT others(17): Show GGGGGGGTAGGGAGGATTTCAGGTC	intron_variant intron_variant	MODIFIER	NA18971.hp1 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0119	1	260	0.0039	24	c.624 others(41): Show c.624+9496_624+9497insGGGGGGTAGGGAGGATTTCAGGTC	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507627	G G	GGGGTAGG others(17): Show GGGGTAGGGAGGATTTCAGGTCGGT	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0014 a0002c0002t0001g0014	1	260	0.0039	24	c.624 others(41): Show c.624+9499_624+9500insGGGTAGGGAGGATTTCAGGTCGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507629	G G	GGTAGGGA others(17): Show GGTAGGGAGGATTTCAGGTCGGGGA	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0078 a0002c0002t0001g0078	1	260	0.0039	24	c.624 others(41): Show c.624+9502_624+9503insTAGGGAGGATTTCAGGTCGGGGAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507673	G G	GTGGGGGG others(17): Show GTGGGGGGTAGGGAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0094 a0001c0001t0001g0094	1	260	0.0039	24	c.625 others(41): Show c.625-9507_625-9506insTGGGGGGTAGGGAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507685	C C	CAGGATTT others(17): Show CAGGATTTCAGGTGGGGGGATAGGG	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0252 a0001c0001t0001g0252	1	260	0.0039	24	c.625 others(41): Show c.625-9482_625-9481insGGGGGATAGGGAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507685	C C	CAGGATTT others(17): Show CAGGATTTCAGGTGGGGGGGTAGGG	intron_variant intron_variant	MODIFIER	NA19012.hp2 NA20752.hp1 NA19012.hp2 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0080 a0002c0002t0001g0021 a0001c0001t0001g0080 a0002c0002t0001g0021	2	260	0.0077	24	c.625 others(41): Show c.625-9482_625-9481insGGGGGGTAGGGAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507685	C C	CAGGATTT others(17): Show CAGGATTTCAGGTTGGGGGGTAGGG	intron_variant intron_variant	MODIFIER	NA19091.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0165 a0001c0001t0001g0165	1	260	0.0039	24	c.625 others(41): Show c.625-9483_625-9482insTGGGGGGTAGGGAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507688	G G	GATTTCAG others(17): Show GATTTCAGGTGGGGGGATAGGGAGT	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG02622.hp2 NA18906.hp1 HG01099.hp1 HG02622.hp2 NA18906.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0009 a0003c0003t0002g0011 a0003c0003t0002g0012 a0003c0003t0002g0009 a0003c0003t0002g0011 a0003c0003t0002g0012	3	260	0.0115	24	c.625 others(41): Show c.625-9482_625-9481insGGGGGATAGGGAGTATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507701	G G	GGGGTAGG others(17): Show GGGGTAGGGAGGATTTCAGGTCGGT	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0121 a0002c0002t0001g0121	1	260	0.0039	24	c.625 others(41): Show c.625-9479_625-9478insGGGTAGGGAGGATTTCAGGTCGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507713	G G	GATTTCAG others(17): Show GATTTCAGGTGGGGGGGTAGGGAGT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01433.hp2 HG02015.hp2 HG01123.hp1 HG01433.hp2 HG02015.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0004g0173 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0004g0173	3	260	0.0115	24	c.625 others(41): Show c.625-9444_625-9443insTATTTCAGGTGGGGGGGTAGGGAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507795	T T	TCGGCGGG others(17): Show TCGGCGGGGTAGGGAGGATTTCAGG	intron_variant intron_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0021 a0002c0002t0001g0021	1	260	0.0039	24	c.625 others(41): Show c.625-9385_625-9384insCGGCGGGGTAGGGAGGATTTCAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507795	T T	TCGGGGGG others(17): Show TCGGGGGGGTAGACAGGATTTCAGG	intron_variant intron_variant	MODIFIER	HG02451.hp2 NA18962.hp1 NA19091.hp1 HG02451.hp2 NA18962.hp1 NA19091.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0009 a0001c0001t0001 a0003c0003t0009	a0001c0001t0001g0165 a0001c0001t0001g0166 a0003c0003t0009g0257 a0001c0001t0001g0165 a0001c0001t0001g0166 a0003c0003t0009g0257	3	260	0.0115	24	c.625 others(41): Show c.625-9385_625-9384insCGGGGGGGTAGACAGGATTTCAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507795	T T	TCGGGGGG others(17): Show TCGGGGGGGTAGGGAGGATTTCAGG	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01943.hp1 HG01433.hp2 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0055 a0001c0001t0004g0173 a0001c0001t0001g0055 a0001c0001t0004g0173	2	260	0.0077	24	c.625 others(41): Show c.625-9385_625-9384insCGGGGGGGTAGGGAGGATTTCAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507795	T T	TCGGTGGG others(17): Show TCGGTGGGGTAGACAGGATTTCAGG	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0218 a0001c0001t0001g0218	1	260	0.0039	24	c.625 others(41): Show c.625-9385_625-9384insCGGTGGGGTAGACAGGATTTCAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507796	G G	GTGGAGGG others(17): Show GTGGAGGGTAGACAGGATTTCAGGT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00597.hp2 HG01515.hp2 others(21): Show HG00323.hp2 HG00597.hp2 HG01515.hp2 HG01981.hp2 HG02040.hp1 HG02040.hp2 HG02129.hp2 HG02486.hp1 HG02698.hp2 HG02735.hp2 HG02897.hp1 HG03225.hp1 HG04184.hp1 NA18747.hp1 NA18964.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18990.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp2 NA19057.hp1 NA19091.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0006	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0006c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0018 a0002c0002t0016 a0003c0003t0002 a0003c0003t0008 a0006c0005t0001	a0001c0001t0001g0019 a0001c0001t0001g0073 a0001c0001t0001g0080 others(21): Show a0001c0001t0001g0019 a0001c0001t0001g0073 a0001c0001t0001g0080 a0001c0001t0001g0084 a0001c0001t0001g0108 a0001c0001t0001g0119 a0001c0001t0001g0132 a0001c0001t0001g0148 a0001c0001t0001g0157 a0001c0001t0001g0172 a0001c0001t0001g0199 a0001c0001t0001g0216 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0003g0076 a0001c0001t0003g0177 a0001c0001t0010g0042 a0001c0001t0018g0037 a0002c0002t0016g0052 a0003c0003t0002g0013 a0003c0003t0008g0008 a0006c0005t0001g0162	24	260	0.0923	24	c.625 others(41): Show c.625-9384_625-9383insTGGAGGGTAGACAGGATTTCAGGT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507875	G G	GGTAGGGA others(17): Show GGTAGGGAGGATTTCAGGTGGGGGT	intron_variant intron_variant	MODIFIER	NA18975.hp2 NA18975.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0176 a0002c0002t0001g0176	1	260	0.0039	24	c.625 others(41): Show c.625-9300_625-9299insGAGGATTTCAGGTGGGGGTGTAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHX4_chr1_180225264_180283984	180264378	A A	AACACACA others(17): Show AACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG06807.hp2 HG01516.hp2 HG06807.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0008 a0002c0002t0001 a0001c0001t0008 a0002c0002t0001	a0001c0001t0008g0093 a0002c0002t0001g0152 a0001c0001t0008g0093 a0002c0002t0001g0152	2	402	0.0050	24	c.249 others(41): Show c.249-2002_249-1979dupCACACACACACACACACACACACA	LHX4	ENSG00000121454.6	transcript	ENST00000263726.4	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LHX5_chr12_113457033_113476871	113461038	C C	CTCTTTCT others(17): Show CTCTTTCTTTCTTTCTTTCTTTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG01074.hp1 HG02135.hp2 others(16): Show HG00280.hp1 HG01074.hp1 HG02135.hp2 HG02615.hp1 HG03669.hp1 HG04115.hp1 NA18944.hp1 NA18954.hp1 NA18971.hp2 NA18980.hp1 NA19012.hp2 NA19054.hp1 NA19057.hp1 NA19057.hp2 NA19081.hp2 NA19083.hp1 NA19088.hp1 NA19088.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(5): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0025 a0001c0001t0001g0051 a0001c0001t0001g0058 a0001c0001t0001g0062 a0001c0001t0004g0022	19	396	0.0480	24	c.21 others(35): Show c.2151_*2152insAAGAAAGAAAGAAAGAAAGAAAGA	LHX5	ENSG00000089116.4	transcript	ENST00000261731.4	protein_coding		994		chr12	TogoVar
LIAS_chr4_39454056_39484506	39477611	T T	TTGTCCCA others(17): Show TTGTCCCAATTAAACAGTTGCTTGC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02273.hp2 HG02273.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0066 a0001c0001t0017g0066	1	424	0.0024	24	c.50 others(33): Show c.500_*523dupCCCAATTAAACAGTTGCTTGCTGT	LIAS	ENSG00000121897.15	transcript	ENST00000640888.2	protein_coding	11/11	524	INFO_REALIGN_3_PRIME	chr4	TogoVar
LIFR_chr5_38469668_38561646	38517856	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00735.hp1 HG02135.hp1 others(3): Show HG00558.hp2 HG00735.hp1 HG02135.hp1 HG02300.hp1 HG02300.hp2 HG03490.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0005 a0001c0001t0001 a0004c0004t0005	a0001c0001t0001g0072 a0001c0001t0001g0185 a0001c0001t0001g0194 others(3): Show a0001c0001t0001g0072 a0001c0001t0001g0185 a0001c0001t0001g0194 a0001c0001t0001g0209 a0001c0001t0001g0241 a0004c0004t0005g0112	6	374	0.0160	24	c.561 others(41): Show c.561+5539_561+5562dupTTTTTTTTTTTTTTTTTTTTTTTT	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	5/19			chr5	TogoVar
LIG1_chr19_48110445_48175344	48142442	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0006 a0002c0005t0001g0006	1	330	0.0030	24	c.914 others(41): Show c.914+1100_914+1101insTTTTTTTTTTTTTTTTTTTTTTTT	LIG1	ENSG00000105486.15	transcript	ENST00000263274.12	protein_coding	11/27			chr19	TogoVar
LIG4_chr13_108202442_108220536	108207175	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02273.hp1 HG02293.hp2 NA18993.hp1 HG02273.hp1 HG02293.hp2 NA18993.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0006 a0001c0001 a0005c0006	a0001c0001t0001 a0005c0006t0001 a0001c0001t0001 a0005c0006t0001	a0001c0001t0001g0017 a0005c0006t0001g0095 a0001c0001t0001g0017 a0005c0006t0001g0095	3	374	0.0080	24	c.13 others(35): Show c.1357_*1358insTTTTTTTTTTTTTTTTTTTTTTTT	LIG4	ENSG00000174405.15	transcript	ENST00000442234.6	protein_coding		266		chr13	TogoVar
LILRA5_chr19_54302070_54318166	54304741	T T	TTTTCTTT others(17): Show TTTTCTTTCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00735.hp2 HG02723.hp1 others(2): Show HG00323.hp2 HG00735.hp2 HG02723.hp1 NA18940.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0001 a0001c0001t0002 a0001c0001t0004	a0001c0001t0001g0188 a0001c0001t0002g0020 a0001c0001t0002g0035 others(2): Show a0001c0001t0001g0188 a0001c0001t0002g0020 a0001c0001t0002g0035 a0001c0001t0002g0185 a0001c0001t0004g0004	5	409	0.0122	24	c.26 others(35): Show c.2671_*2672insGAAAGAAAGAAAGAAAGAAAGAAA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding		2328		chr19	TogoVar
LILRA5_chr19_54302070_54318166	54304899	C C	CTTCTTTC others(17): Show CTTCTTTCTTTCTTTCTTTCTTTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp2 NA18944.hp2 NA18947.hp2 others(3): Show HG00408.hp2 NA18944.hp2 NA18947.hp2 NA18951.hp2 NA18983.hp1 NA19002.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0024 a0001c0001t0009g0018 a0001c0001t0009g0091 a0001c0001t0001g0024 a0001c0001t0009g0018 a0001c0001t0009g0091	6	409	0.0147	24	c.25 others(35): Show c.2513_*2514insAGAAAGAAAGAAAGAAAGAAAGAA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding		2170		chr19	TogoVar
LIMA1_chr12_50170788_50288520	50175363	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0127 a0001c0001t0004g0127	1	294	0.0034	24	c.17 others(35): Show c.1700_*1701insTTTTTTTTTTTTTTTTTTTTTTTT	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding		424		chr12	TogoVar
LIMA1_chr12_50170788_50288520	50214051	C C	CACACACA others(17): Show CACACACACACACACACACACACAT	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0062 a0001c0001t0002g0062	1	294	0.0034	24	c.630 others(41): Show c.630+7969_630+7970insATGTGTGTGTGTGTGTGTGTGTGT	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding	4/10			chr12	TogoVar
LIMA1_chr12_50170788_50288520	50247604	A A	AATTATTA others(17): Show AATTATTATTATTATTATTATTATT	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02818.hp2 HG03209.hp1 others(8): Show HG02683.hp1 HG02818.hp2 HG03209.hp1 HG03579.hp1 NA18962.hp1 NA18966.hp2 NA18975.hp1 NA18979.hp1 NA18992.hp1 NA18995.hp2 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0183 a0001c0001t0002g0035 a0001c0001t0002g0055 others(8): Show a0001c0001t0001g0183 a0001c0001t0002g0035 a0001c0001t0002g0055 a0001c0001t0002g0073 a0001c0001t0003g0038 a0001c0001t0003g0065 a0001c0001t0003g0071 a0001c0001t0003g0076 a0001c0001t0003g0078 a0001c0001t0003g0084 a0001c0001t0003g0102	11	294	0.0374	24	c.119 others(41): Show c.119+1005_119+1028dupAATAATAATAATAATAATAATAAT	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding	2/10			chr12	TogoVar

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