Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRCH1_chr13_46548170_46749898	46602978	G G	GCATACAT others(17): Show GCATACATACATACATATATACATA	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0031 a0001c0012t0031	a0001c0012t0031g0161 a0001c0012t0031g0161	1	274	0.0037	24	c.308 others(43): Show c.308-47207_308-47206insTATACATACATACATACATACATA	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH2_chrX_115105616_115239096	115197847	T T	TCTCTCTC others(17): Show TCTCTCTCTCTCTCTCACACACACA	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0209 a0001c0001t0001g0209	1	238	0.0042	24	c.350 others(41): Show c.350-9478_350-9477insTGTGTGTGTGAGAGAGAGAGAGAG	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRCH2_chrX_115105616_115239096	115197847	T T	TCTCTCTC others(17): Show TCTCTCTCTCTCTCTCTCTCTCTCA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0157 a0001c0001t0002g0157	1	238	0.0042	24	c.350 others(41): Show c.350-9478_350-9477insTGAGAGAGAGAGAGAGAGAGAGAG	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRCH3_chr3_197786254_197893436	197792577	T T	TTATATAT others(17): Show TTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01358.hp2 HG01884.hp2 others(11): Show HG01123.hp1 HG01358.hp2 HG01884.hp2 HG01978.hp2 HG02080.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp2 HG02293.hp2 HG03471.hp2 HG04204.hp1 NA18954.hp1 NA19002.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 others(1): Show a0001c0001 a0001c0002 a0002c0003 a0002c0006	a0001c0001t0001 a0001c0001t0066 a0001c0002t0001 others(5): Show a0001c0001t0001 a0001c0001t0066 a0001c0002t0001 a0001c0002t0030 a0001c0002t0072 a0002c0003t0002 a0002c0003t0013 a0002c0006t0018	a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0147 others(11): Show a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0066g0146 a0001c0002t0001g0140 a0001c0002t0001g0141 a0001c0002t0030g0150 a0001c0002t0072g0142 a0002c0003t0002g0139 a0002c0003t0013g0145 a0002c0006t0018g0149	14	292	0.0480	24	c.262 others(41): Show c.262+1042_262+1065dupTATATATATATATATATATATATA	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197817360	G G	GTATATAT others(17): Show GTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0056 a0001c0001t0056	a0001c0001t0056g0041 a0001c0001t0056g0041	1	292	0.0034	24	c.534 others(37): Show c.534+77_534+78insATATATATATATATATATATATAT	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH4_chr7_100569011_100591129	100574632	G G	GCGCGCGC others(17): Show GCGCGCGCACACACACACACACACA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0033 a0001c0004t0033	a0001c0004t0033g0069 a0001c0004t0033g0069	1	370	0.0027	24	c.47 others(33): Show c.474_*475insTGTGTGTGTGTGTGTGTGCGCGCG	LRCH4	ENSG00000077454.17	transcript	ENST00000310300.11	protein_coding	18/18	474		chr7	TogoVar
LRFN2_chr6_40386591_40592364	40548440	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0032 a0001c0003t0002g0032	1	228	0.0044	24	c.-19 others(43): Show c.-19+38500_-19+38501insTTTTTTTTTTTTTTTTTTTTTTTT	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRFN2_chr6_40386591_40592364	40568684	T T	TTTCCTTC others(17): Show TTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0175	1	228	0.0044	24	c.-19 others(43): Show c.-19+18233_-19+18256dupGGAAGGAAGGAAGGAAGGAAGGAA	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRFN2_chr6_40386591_40592364	40583202	A A	ATATATAC others(17): Show ATATATACACTATATACATATATAG	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01169.hp1 HG01192.hp1 others(24): Show HG01081.hp2 HG01169.hp1 HG01192.hp1 HG01261.hp1 HG02040.hp2 HG02080.hp2 HG02523.hp1 HG02602.hp2 HG02622.hp2 HG02738.hp2 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02965.hp1 HG02976.hp2 HG03209.hp2 HG03471.hp1 HG03486.hp2 HG03516.hp1 NA18941.hp1 NA18982.hp2 NA18983.hp2 NA18986.hp2 NA18993.hp2 NA19007.hp1 NA19043.hp1 NA19054.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0011 a0002c0005	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0003t0002 a0001c0004t0001 a0001c0006t0001 a0001c0011t0001 a0002c0005t0001	a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0014 others(24): Show a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0024 a0001c0001t0001g0035 a0001c0001t0001g0054 a0001c0001t0001g0065 a0001c0001t0001g0067 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0092 a0001c0001t0001g0183 a0001c0001t0001g0216 a0001c0001t0001g0220 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0004g0018 a0001c0002t0001g0015 a0001c0002t0001g0042 a0001c0002t0001g0047 a0001c0002t0001g0075 a0001c0003t0002g0074 a0001c0004t0001g0228 a0001c0006t0001g0185 a0001c0006t0001g0209 a0001c0011t0001g0227 a0002c0005t0001g0073	27	228	0.1184	24	c.-19 others(41): Show c.-19+3738_-19+3739insCTATATATGTATATAGTGTATATA	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRFN5_chr14_41601876_41909549	41610661	T T	TAAAAAAA others(17): Show TAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01515.hp2 HG03927.hp2 HG01123.hp1 HG01515.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0002t0018 a0001c0001t0001 a0001c0002t0001 a0001c0002t0018	a0001c0001t0001g0057 a0001c0002t0001g0058 a0001c0002t0018g0059 a0001c0001t0001g0057 a0001c0002t0001g0058 a0001c0002t0018g0059	3	280	0.0107	24	c.-19 others(43): Show c.-197+2121_-197+2122insAAAAAAAAAAAAAAAAAAAAAAAA	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41704446	C C	CTGTGTGT others(17): Show CTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0135 a0001c0003t0004g0135	1	280	0.0036	24	c.-19 others(45): Show c.-196-62407_-196-62406insGTGTGTGTGTGTGTGTGTGTGTGT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41704448	C C	CTCTCTGT others(17): Show CTCTCTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0274 a0001c0002t0006g0274	1	280	0.0036	24	c.-19 others(45): Show c.-196-62405_-196-62404insCTCTGTGTGTGTGTGTGTGTGTGT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41704448	C C	CTCTGTGT others(17): Show CTCTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0139 a0001c0002t0004g0139	1	280	0.0036	24	c.-19 others(45): Show c.-196-62405_-196-62404insCTGTGTGTGTGTGTGTGTGTGTGT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41704448	C C	CTGTGTGT others(17): Show CTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02280.hp2 HG02559.hp1 others(1): Show HG02257.hp2 HG02280.hp2 HG02559.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0001t0009 a0001c0002t0004 a0001c0001t0004 a0001c0001t0009 a0001c0002t0004	a0001c0001t0004g0134 a0001c0001t0009g0132 a0001c0002t0004g0123 others(1): Show a0001c0001t0004g0134 a0001c0001t0009g0132 a0001c0002t0004g0123 a0001c0002t0004g0136	4	280	0.0143	24	c.-19 others(45): Show c.-196-62393_-196-62392insGTGTGTGTGTGTGTGTGTGTGTGT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41734316	T T	TTATATAT others(17): Show TTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp2 HG02293.hp2 others(9): Show HG01192.hp1 HG01192.hp2 HG02293.hp2 HG02717.hp2 HG03688.hp1 NA18940.hp2 NA18949.hp2 NA18950.hp1 NA19001.hp1 NA19004.hp1 NA19004.hp2 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0002t0002	a0001c0001t0001g0040 a0001c0001t0001g0104 a0001c0001t0001g0159 others(9): Show a0001c0001t0001g0040 a0001c0001t0001g0104 a0001c0001t0001g0159 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0204 a0001c0001t0001g0218 a0001c0001t0004g0122 a0001c0002t0001g0182 a0001c0002t0002g0017	12	280	0.0429	24	c.-19 others(45): Show c.-196-32532_-196-32509dupATATATATATATATATATATATAT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41734344	A A	ATATATAT others(17): Show ATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02922.hp2 HG03139.hp2 HG02622.hp2 HG02922.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0001 a0001c0002t0003 a0001c0001t0003 a0001c0002t0001 a0001c0002t0003	a0001c0001t0003g0244 a0001c0002t0001g0113 a0001c0002t0003g0235 a0001c0001t0003g0244 a0001c0002t0001g0113 a0001c0002t0003g0235	3	280	0.0107	24	c.-19 others(45): Show c.-196-32509_-196-32508insATATATATATATATATATATATTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41856675	A A	ATTATTAT others(17): Show ATTATTATTATTATTATTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0239 a0001c0002t0003g0239	1	280	0.0036	24	c.-20 others(43): Show c.-20-29929_-20-29928insATTATTATTATTATTTTTTTTTTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41856675	A A	ATTATTAT others(17): Show ATTATTATTATTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0136 a0001c0002t0004g0136	1	280	0.0036	24	c.-20 others(43): Show c.-20-29929_-20-29928insATTATTATTTTTTTTTTTTTTTTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRGUK_chr7_134122340_134269595	134263403	C C	CTGTGTGT others(17): Show CTGTGTGTGTGTGTGTGTCTGTGTG	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02258.hp2 HG03453.hp2 others(3): Show HG02145.hp2 HG02258.hp2 HG03453.hp2 HG03579.hp2 HG03927.hp2 NA19030.hp2	a0001 a0001	a0001c0003 a0001c0014 a0001c0003 a0001c0014	a0001c0003t0004 a0001c0014t0004 a0001c0003t0004 a0001c0014t0004	a0001c0003t0004g0033 a0001c0003t0004g0091 a0001c0003t0004g0154 others(3): Show a0001c0003t0004g0033 a0001c0003t0004g0091 a0001c0003t0004g0154 a0001c0003t0004g0188 a0001c0003t0004g0189 a0001c0014t0004g0039	6	220	0.0273	24	c.234 others(41): Show c.2348-427_2348-426insGTCTGTGTGTGTGTGTGTGTGTGT	LRGUK	ENSG00000155530.4	transcript	ENST00000285928.3	protein_coding	19/19		INFO_REALIGN_3_PRIME	chr7	TogoVar
LRGUK_chr7_134122340_134269595	134263403	C C	CTGTGTGT others(17): Show CTGTGTGTGTGTGTGTGTGTCTGTG	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0076 a0001c0003t0004g0076	1	220	0.0046	24	c.234 others(41): Show c.2348-427_2348-426insGTGTCTGTGTGTGTGTGTGTGTGT	LRGUK	ENSG00000155530.4	transcript	ENST00000285928.3	protein_coding	19/19		INFO_REALIGN_3_PRIME	chr7	TogoVar
LRIF1_chr1_110942190_110968922	110957470	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01256.hp2 NA18747.hp2 NA18956.hp2 others(1): Show HG01256.hp2 NA18747.hp2 NA18956.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0018 a0001c0001t0004g0018	4	446	0.0090	24	c.69- others(39): Show c.69-4656_69-4655insTTTTTTTTTTTTTTTTTTTTTTTT	LRIF1	ENSG00000121931.16	transcript	ENST00000369763.5	protein_coding	1/3			chr1	TogoVar
LRIG1_chr3_66373797_66506022	66408913	A A	AGTGTGTG others(17): Show AGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG03017.hp1 NA18988.hp2 others(2): Show HG00544.hp2 HG03017.hp1 NA18988.hp2 NA19004.hp1 NA19077.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0047 a0002c0001t0001g0059 a0002c0001t0001g0102 others(2): Show a0002c0001t0001g0047 a0002c0001t0001g0059 a0002c0001t0001g0102 a0002c0001t0001g0144 a0002c0001t0001g0154	5	264	0.0189	24	c.935 others(41): Show c.935+1192_935+1215dupACACACACACACACACACACACAC	LRIG1	ENSG00000144749.14	transcript	ENST00000273261.8	protein_coding	7/18			chr3	TogoVar
LRIT3_chr4_109843107_109877315	109850410	C C	CTTCTTCT others(17): Show CTTCTTCTTCTTCCTTCCTTTCTTT	intron_variant intron_variant	MODIFIER	NA19054.hp2 NA19054.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0004 a0002c0001t0004	a0002c0001t0004g0300 a0002c0001t0004g0300	1	332	0.0030	24	c.117 others(41): Show c.117-1094_117-1093insTTCTTCTTCTTCCTTCCTTTCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRMDA_chr10_75426624_76565168	75608129	T T	TATATATA others(17): Show TATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01258.hp1 HG01258.hp2 NA19030.hp1 HG01258.hp1 HG01258.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0012 a0001c0001t0018 a0001c0002t0001 a0001c0001t0012 a0001c0001t0018 a0001c0002t0001	a0001c0001t0012g0021 a0001c0001t0018g0015 a0001c0002t0001g0017 a0001c0001t0012g0021 a0001c0001t0018g0015 a0001c0002t0001g0017	3	46	0.0652	24	c.131 others(45): Show c.131+169636_131+169637insTATATATATATATATATATACACA	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	75616234	T T	TAGCAGCA others(17): Show TAGCAGCAGCAGCAGCAGCAGCAGC	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0029 a0001c0001t0001g0029	1	46	0.0217	24	c.131 others(45): Show c.131+177745_131+177746insCAGCAGCAGCAGCAGCAGCAGCAG	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	75672589	C C	CCCTTCCC others(17): Show CCCTTCCCTACCCTACCCTACCCTG	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0003 a0001c0001t0007g0003	1	46	0.0217	24	c.131 others(45): Show c.131+234095_131+234096insCCTTCCCTACCCTACCCTACCCTG	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6			chr10	TogoVar
LRMDA_chr10_75426624_76565168	76084194	C C	CTATTTAT others(17): Show CTATTTATTTATTTATTTATTTATT	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0030 a0001c0002t0003g0030	1	46	0.0217	24	c.516 others(43): Show c.516+25432_516+25433insATTTATTTATTTATTTATTTATTT	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	76363176	A A	AGAAAAAA others(17): Show AGAAAAAAAGAAAGAAAGAAAGGAG	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0036 a0001c0002t0002g0036	1	46	0.0217	24	c.601 others(43): Show c.601+38692_601+38693insAAAAAAAGAAAGAAAGAAAGGAGG	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	76363176	A A	AGAAAGGA others(17): Show AGAAAGGAGGGAGGGAGGGAGGGAG	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03486.hp1 HG03098.hp1 HG03486.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0005 a0001c0001 a0002c0005	a0001c0001t0002 a0002c0005t0005 a0001c0001t0002 a0002c0005t0005	a0001c0001t0002g0027 a0002c0005t0005g0023 a0001c0001t0002g0027 a0002c0005t0005g0023	2	46	0.0435	24	c.601 others(43): Show c.601+38692_601+38693insAAAGGAGGGAGGGAGGGAGGGAGG	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	76363215	A A	AGGGAGGG others(17): Show AGGGAGGGAAGGAAGGGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0037	1	46	0.0217	24	c.601 others(43): Show c.601+38730_601+38731insGGGAGGGAAGGAAGGGAGAGAGAG	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	6/6			chr10	TogoVar
LRMDA_chr10_75426624_76565168	76363276	A A	AAGGAAGG others(17): Show AAGGAAGGAAGGAAGGAAAGGAAGG	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03471.hp1 NA19030.hp1 HG02818.hp2 HG03471.hp1 NA19030.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0019 a0001c0002t0001 a0001c0002t0019	a0001c0002t0001g0017 a0001c0002t0001g0038 a0001c0002t0019g0045 a0001c0002t0001g0017 a0001c0002t0001g0038 a0001c0002t0019g0045	3	46	0.0652	24	c.601 others(43): Show c.601+38792_601+38793insGGAAGGAAGGAAGGAAAGGAAGGA	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	76365107	T T	TATATATA others(17): Show TATATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG03139.hp1 HG03209.hp1 HG00639.hp1 HG03139.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0008 a0001c0002t0014 a0001c0001t0001 a0001c0001t0008 a0001c0002t0014	a0001c0001t0001g0039 a0001c0001t0008g0010 a0001c0002t0014g0041 a0001c0001t0001g0039 a0001c0001t0008g0010 a0001c0002t0014g0041	3	46	0.0652	24	c.601 others(43): Show c.601+40623_601+40624insTATATATATATATATATACACACA	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	76365107	T T	TATATATA others(17): Show TATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01081.hp1 HG00642.hp2 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0013 a0001c0002t0008 a0001c0001t0013 a0001c0002t0008	a0001c0001t0013g0022 a0001c0002t0008g0025 a0001c0001t0013g0022 a0001c0002t0008g0025	2	46	0.0435	24	c.601 others(43): Show c.601+40623_601+40624insTATATATATATATATATATACACA	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP11_chr6_149813757_149869359	149859377	C C	CATATATA others(17): Show CATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG02135.hp1 HG02135.hp2 others(5): Show HG01257.hp1 HG02135.hp1 HG02135.hp2 HG02155.hp2 HG03688.hp1 NA18944.hp1 NA18973.hp1 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0001 a0001c0008t0001 a0001c0001t0001 a0001c0008t0001	a0001c0001t0001g0149 a0001c0001t0001g0233 a0001c0001t0001g0260 others(5): Show a0001c0001t0001g0149 a0001c0001t0001g0233 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0274 a0001c0001t0001g0279 a0001c0008t0001g0214	8	334	0.0240	24	c.613 others(41): Show c.613+4030_613+4031insATATATATATATATATATATATAT	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(17): Show ATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0250 a0001c0001t0001g0250	1	334	0.0030	24	c.613 others(41): Show c.613+4011_613+4012insAATATATATATATATATATATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(17): Show ATATATATATATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03669.hp1 HG03041.hp2 HG03669.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0001 a0003c0003t0003 a0002c0002t0001 a0003c0003t0003	a0002c0002t0001g0131 a0003c0003t0003g0128 a0002c0002t0001g0131 a0003c0003t0003g0128	2	334	0.0060	24	c.613 others(41): Show c.613+4011_613+4012insAAAAAAAAAAAAAATATATATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(17): Show ATATATATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0055 a0003c0003t0003g0055	1	334	0.0030	24	c.613 others(41): Show c.613+4011_613+4012insAAAAAAAAAAAAAAAAAATATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP12_chr8_104484236_104594258	104542994	A A	AATATATA others(17): Show AATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0056 a0001c0001t0056	a0001c0001t0056g0309 a0001c0001t0056g0309	1	318	0.0031	24	c.80- others(41): Show c.80-11032_80-11031insATATATATATATATATATATATAT	LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	1/6			chr8	TogoVar
LRP12_chr8_104484236_104594258	104548938	A A	AAAATAAA others(17): Show AAAATAAATAAATAAATAAATAAAT	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0012 a0002c0004t0012	a0002c0004t0012g0021 a0002c0004t0012g0021	1	318	0.0031	24	c.80- others(41): Show c.80-16999_80-16976dupATTTATTTATTTATTTATTTATTT	LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	1/6			chr8	TogoVar
LRP1B_chr2_140226423_142136016	140252062	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0028 a0001c0028	a0001c0028t0002 a0001c0028t0002	a0001c0028t0002g0020 a0001c0028t0002g0020	1	28	0.0357	24	c.132 others(45): Show c.13248-4924_13248-4901dupTTTTTTTTTTTTTTTTTTTTTTTT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	86/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	140291298	T T	TTATATAT others(17): Show TTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02922.hp2 HG02965.hp1 HG02145.hp2 HG02922.hp2 HG02965.hp1	a0001 a0001	a0001c0008 a0001c0019 a0001c0027 a0001c0008 a0001c0019 a0001c0027	a0001c0008t0001 a0001c0019t0001 a0001c0027t0001 a0001c0008t0001 a0001c0019t0001 a0001c0027t0001	a0001c0008t0001g0008 a0001c0019t0001g0016 a0001c0027t0001g0021 a0001c0008t0001g0008 a0001c0019t0001g0016 a0001c0027t0001g0021	3	28	0.1071	24	c.129 others(45): Show c.12967+6509_12967+6510insTATATATATATATATATATATATA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	84/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	140440743	A A	ATGTGTGT others(17): Show ATGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0023 a0001c0023	a0001c0023t0003 a0001c0023t0003	a0001c0023t0003g0001 a0001c0023t0003g0001	1	28	0.0357	24	c.104 others(45): Show c.10414+1760_10414+1761insCACACACACACACACACACACACA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	66/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	140613352	A A	AATAATTA others(17): Show AATAATTATATAAATATAAATATAT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0019 a0001c0019	a0001c0019t0001 a0001c0019t0001	a0001c0019t0001g0016 a0001c0019t0001g0016	1	28	0.0357	24	c.680 others(45): Show c.6800-11737_6800-11714dupATATATTTATATTTATATAATTAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	41/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	140623956	G G	GTATATAT others(17): Show GTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01261.hp2 NA19240.hp1 HG01261.hp2 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0026 a0002c0006 a0001c0026 a0002c0006	a0001c0026t0001 a0002c0006t0002 a0001c0026t0001 a0002c0006t0002	a0001c0026t0001g0025 a0002c0006t0002g0023 a0001c0026t0001g0025 a0002c0006t0002g0023	2	28	0.0714	24	c.680 others(45): Show c.6800-22318_6800-22317insTATATATATATATATATATATATA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	41/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141032826	C C	CATATATA others(17): Show CATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0004 a0002c0004t0004	a0002c0004t0004g0006 a0002c0004t0004g0006	1	28	0.0357	24	c.179 others(45): Show c.1790-12725_1790-12724insATATATATATATATATATATATAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	11/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141103522	T T	TTCTCTCT others(17): Show TTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0004 a0001c0014t0004	a0001c0014t0004g0002 a0001c0014t0004g0002	1	28	0.0357	24	c.101 others(45): Show c.1014-41250_1014-41249insGAGAGAGAGAGAGAGAGAGAGAGA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	7/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141331530	T T	TTCTTTCT others(17): Show TTCTTTCTTTCTTTCTTTCTTTCTC	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02922.hp2 HG01261.hp2 HG02922.hp2	a0001 a0001	a0001c0008 a0001c0026 a0001c0008 a0001c0026	a0001c0008t0001 a0001c0026t0001 a0001c0008t0001 a0001c0026t0001	a0001c0008t0001g0008 a0001c0026t0001g0025 a0001c0008t0001g0008 a0001c0026t0001g0025	2	28	0.0714	24	c.344 others(43): Show c.344-76890_344-76889insGAGAAAGAAAGAAAGAAAGAAAGA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	3/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141610326	A A	ATTATTAT others(17): Show ATTATTATACTTTAAAACTTAAAGT	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0003 a0003	a0003c0021 a0003c0021	a0003c0021t0001 a0003c0021t0001	a0003c0021t0001g0026 a0003c0021t0001g0026	1	28	0.0357	24	c.206 others(45): Show c.206-129794_206-129793insACTTTAAGTTTTAAAGTATAATAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141690396	A A	AATAAATA others(17): Show AATAAATAAATAAATAAATATATAT	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0010	a0001c0002t0010g0022 a0001c0002t0010g0022	1	28	0.0357	24	c.205 others(45): Show c.205+119882_205+119883insATATATATTTATTTATTTATTTAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141691465	A A	AACACACA others(17): Show AACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0015 a0001c0015	a0001c0015t0009 a0001c0015t0009	a0001c0015t0009g0017 a0001c0015t0009g0017	1	28	0.0357	24	c.205 others(45): Show c.205+118813_205+118814insGTGTGTGTGTGTGTGTGTGTGTGT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar

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