Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

Sort By

Select column to sort.

Order by

Ascending or descending.

Show

Results per page.

⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRC36_chr16_67321815_67390204	67331069	A A	AAGAGAGA others(17): Show AAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0046 a0002c0002t0002g0046	1	194	0.0052	24	c.70+ others(39): Show c.70+4159_70+4182dupGAGAGAGAGAGAGAGAGAGAGAGA	LRRC36	ENSG00000159708.18	transcript	ENST00000329956.11	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
LRRC36_chr16_67321815_67390204	67338009	A A	AGGAGGCA others(17): Show AGGAGGCAGAGGTTGTGATGAGCTG	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0079 a0001c0001t0001g0079	1	194	0.0052	24	c.71- others(39): Show c.71-3947_71-3924dupGGAGGCAGAGGTTGTGATGAGCTG	LRRC36	ENSG00000159708.18	transcript	ENST00000329956.11	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
LRRC3B_chr3_26617772_26715776	26636820	C C	CCCTCCCT others(17): Show CCCTCCCTCCCTCCCTCCCTCCCTG	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02451.hp1 HG02559.hp2 others(4): Show HG00639.hp2 HG02451.hp1 HG02559.hp2 HG02723.hp1 HG03225.hp1 HG06807.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0001t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0001g0308 a0001c0001t0002g0021 a0001c0001t0002g0295 others(4): Show a0001c0001t0001g0308 a0001c0001t0002g0021 a0001c0001t0002g0295 a0001c0001t0002g0336 a0001c0001t0002g0337 a0001c0001t0002g0338 a0001c0002t0001g0339	7	370	0.0189	24	c.-16 others(45): Show c.-161+13602_-161+13603insCCCTGCCTCCCTCCCTCCCTCCCT	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TAGAGAGA others(17): Show TAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0190	1	370	0.0027	24	c.-16 others(45): Show c.-160-38122_-160-38099dupGAGAGAGAGAGAGAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATAGA others(17): Show TATATAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG03471.hp1 HG01081.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0196 a0001c0001t0001g0033 a0001c0001t0001g0196	2	370	0.0054	24	c.-16 others(45): Show c.-160-38139_-160-38138insTATAGAGAGAGAGAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(17): Show TATATATAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18944.hp1 NA18944.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0306 a0001c0001t0001g0306	1	370	0.0027	24	c.-16 others(45): Show c.-160-38139_-160-38138insTATATAGAGAGAGAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(17): Show TATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA19074.hp1 NA18612.hp2 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0219 a0001c0002t0002g0299 a0001c0001t0001g0219 a0001c0002t0002g0299	2	370	0.0054	24	c.-16 others(45): Show c.-160-38139_-160-38138insTATATATAGAGAGAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(17): Show TATATATATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0296 a0001c0001t0001g0296	1	370	0.0027	24	c.-16 others(45): Show c.-160-38139_-160-38138insTATATATATATAGAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671413	G G	GAGAGAGA others(17): Show GAGAGAGAGAGAGAGAGAGAGAGAC	intron_variant intron_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0012 a0001c0002t0012	a0001c0002t0012g0050 a0001c0002t0012g0050	1	370	0.0027	24	c.-16 others(45): Show c.-160-38099_-160-38098insGAGAGAGAGAGAGAGAGAGAGACA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26691105	G G	GTGTATAT others(17): Show GTGTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19012.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0304 a0001c0001t0001g0304	1	370	0.0027	24	c.-16 others(45): Show c.-160-18407_-160-18406insGTATATATATATATATATATATAT	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3C_chr17_39922732_39949999	39943514	G G	GAGTGCCA others(17): Show GAGTGCCAACCAGACCCTCTGGTGC	intron_variant intron_variant	MODIFIER	NA19059.hp2 NA19059.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0187 a0001c0001t0001g0187	1	404	0.0025	24	c.27- others(37): Show c.27-418_27-395dupAGTGCCAACCAGACCCTCTGGTGC	LRRC3C	ENSG00000204913.7	transcript	ENST00000377924.6	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr17	TogoVar
LRRC3C_chr17_39922732_39949999	39945991	T T	TAAAAAAA others(17): Show TAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0050 a0001c0001t0002g0050	1	404	0.0025	24	c.12 others(35): Show c.1257_*1258insAAAAAAAAAAAAAAAAAAAAAAAA	LRRC3C	ENSG00000204913.7	transcript	ENST00000377924.6	protein_coding		993		chr17	TogoVar
LRRC3_chr21_44450510_44467196	44466090	C C	CACACACA others(17): Show CACACACATGCTCACTCTCCCTGTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0008 a0001c0001t0059g0008	1	426	0.0024	24	c.86 others(35): Show c.8672_*8673insACACACATGCTCACTCTCCCTGTA	LRRC3	ENSG00000160233.8	transcript	ENST00000291592.6	protein_coding		3895		chr21	TogoVar
LRRC40_chr1_70139805_70210579	70190677	T T	TAAAAAAA others(17): Show TAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0158 a0001c0001t0001g0158	1	320	0.0031	24	c.152 others(41): Show c.152-1405_152-1404insTTTTTTTTTTTTTTTTTTTTTTTT	LRRC40	ENSG00000066557.6	transcript	ENST00000370952.4	protein_coding	1/14			chr1	TogoVar
LRRC42_chr1_53941350_53973168	53968074	G G	GTGGGAGG others(17): Show GTGGGAGGGGAATGCTATGGAAGTA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19030.hp2 NA20752.hp2 NA19030.hp2 NA20752.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0137 a0001c0002t0004g0138 a0001c0002t0004g0137 a0001c0002t0004g0138	2	316	0.0063	24	c.13 others(33): Show c.138_*161dupGGAGGGGAATGCTATGGAAGTATG	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	9/9	162	INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC4B_chr19_50511892_50573435	50543335	G G	GGTGTGTG others(17): Show GGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0220	1	360	0.0028	24	c.297 others(41): Show c.297+5183_297+5206dupACACACACACACACACACACACAC	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	2/2			chr19	TogoVar
LRRC4B_chr19_50511892_50573435	50552626	A A	ATCCGCCC others(17): Show ATCCGCCCATCCGTCCATCCATCTG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01074.hp2 NA18999.hp1 HG00280.hp1 HG01074.hp2 NA18999.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0001 a0001c0001t0002 a0002c0002t0001	a0001c0001t0002g0079 a0001c0001t0002g0338 a0002c0002t0001g0158 a0001c0001t0002g0079 a0001c0001t0002g0338 a0002c0002t0001g0158	3	360	0.0083	24	c.-35 others(41): Show c.-35-3754_-35-3753insCAGATGGATGGACGGATGGGCGGA	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	1/2			chr19	TogoVar
LRRC4B_chr19_50511892_50573435	50552646	G G	GTCCATCC others(17): Show GTCCATCCATCTGTCCATCCATCCA	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02145.hp1 HG02896.hp2 others(6): Show HG00621.hp1 HG02145.hp1 HG02896.hp2 HG02897.hp1 HG03195.hp2 HG03516.hp1 NA18747.hp1 NA18959.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0003t0001 a0001c0001t0001 a0001c0001t0002 a0001c0003t0001	a0001c0001t0001g0084 a0001c0001t0001g0100 a0001c0001t0001g0133 others(6): Show a0001c0001t0001g0084 a0001c0001t0001g0100 a0001c0001t0001g0133 a0001c0001t0001g0167 a0001c0001t0002g0103 a0001c0001t0002g0257 a0001c0003t0001g0052 a0001c0003t0001g0053 a0001c0003t0001g0313	9	360	0.0250	24	c.-35 others(41): Show c.-35-3774_-35-3773insTGGATGGATGGACAGATGGATGGA	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	1/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40218606	G G	GTATCTAT others(17): Show GTATCTATCTATCTATCTATCTATC	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0048 a0001c0001t0001g0048	1	48	0.0208	24	c.-96 others(43): Show c.-96+22912_-96+22913insGATAGATAGATAGATAGATAGATA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	5/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40584177	C C	CATATATA others(17): Show CATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03225.hp2 NA20129.hp1 others(1): Show HG03139.hp2 HG03225.hp2 NA20129.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0031 others(1): Show a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0031 a0001c0002t0001g0045	4	48	0.0833	24	c.-27 others(45): Show c.-270+63941_-270+63964dupATATATATATATATATATATATAT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40633371	T T	TTCTTTCT others(17): Show TTCTTTCTTTCTTTCTTTCTTTCTC	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02622.hp1 HG02896.hp2 HG02280.hp1 HG02622.hp1 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0033 a0001c0002t0001g0001 a0001c0002t0001g0011 a0001c0001t0001g0033 a0001c0002t0001g0001 a0001c0002t0001g0011	3	48	0.0625	24	c.-27 others(45): Show c.-270+14770_-270+14771insGAGAAAGAAAGAAAGAAAGAAAGA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40834911	G G	GACAGACA others(17): Show GACAGACAGACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03540.hp2 NA18989.hp2 others(1): Show HG02965.hp1 HG03540.hp2 NA18989.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0040 others(1): Show a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0040 a0001c0001t0001g0044	4	48	0.0833	24	c.-40 others(45): Show c.-407+98723_-407+98724insGTGTGTGTGTGTGTGTCTGTCTGT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40834911	G G	GACAGACA others(17): Show GACAGACAGACAGACACACACACAC	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	48	0.0208	24	c.-40 others(45): Show c.-407+98723_-407+98724insGTGTGTGTGTGTCTGTCTGTCTGT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40857985	A A	AAGGGAAA others(17): Show AAGGGAAAGGGAAAGGGAAAGGGAC	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG03139.hp2 HG02965.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0041 a0001c0002t0001g0045 a0001c0001t0001g0041 a0001c0002t0001g0045	2	48	0.0417	24	c.-40 others(45): Show c.-407+75649_-407+75650insGTCCCTTTCCCTTTCCCTTTCCCT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40857985	A A	AAGGGAAA others(17): Show AAGGGAAAGGGAAAGGGACAGGGAC	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG03098.hp2 NA19030.hp1 HG02922.hp1 HG03098.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0020 a0001c0001t0001g0027 a0001c0001t0002g0043 a0001c0001t0001g0020 a0001c0001t0001g0027 a0001c0001t0002g0043	3	48	0.0625	24	c.-40 others(45): Show c.-407+75649_-407+75650insGTCCCTGTCCCTTTCCCTTTCCCT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41411142	A A	ATTTTTTT others(17): Show ATTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01261.hp2 NA18989.hp1 NA19030.hp2 others(1): Show HG01261.hp2 NA18989.hp1 NA19030.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0004 a0001c0001t0001g0028 a0001c0001t0001g0039 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0028 a0001c0001t0001g0039 a0001c0001t0002g0034	4	48	0.0833	24	c.-49 others(45): Show c.-496+48265_-496+48288dupAAAAAAAAAAAAAAAAAAAAAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41448122	G G	GTTTTTTT others(17): Show GTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	48	0.0208	24	c.-49 others(45): Show c.-496+11308_-496+11309insAAAAAAAAAAAAAAAAAAAAAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4_chr7_128022071_128036437	128031719	G G	GGGCGGGC others(17): Show GGGCGGGCGCGGGTCCGGCGGCGGC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18981.hp2 NA18981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	378	0.0027	24	c.-93 others(33): Show c.-931_-908dupGCCGCCGCCGGACCCGCGCCCGCC	LRRC4	ENSG00000128594.8	transcript	ENST00000249363.4	protein_coding		283		chr7	TogoVar
LRRC53_chr1_74464376_74517611	74486201	A A	AAGAGAGA others(17): Show AAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0022 a0001c0001t0001g0022	1	342	0.0029	24	c.-26 others(41): Show c.-26-2850_-26-2827dupCTCTCTCTCTCTCTCTCTCTCTCT	LRRC53	ENSG00000162621.7	transcript	ENST00000294635.5	protein_coding	1/4			chr1	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CTATATAT others(17): Show CTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0143 a0001c0001t0059g0143	1	356	0.0028	24	c.678 others(39): Show c.678+234_678+235insTATATATATATATATATATATATA	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5			chr15	TogoVar
LRRC57_chr15_42532829_42553793	42549038	G G	GCTGGCTG others(17): Show GCTGGCTGTGGGAGTGGTGAGGGTC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19091.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0135 a0001c0001t0004g0135	1	356	0.0028	24	c.-39 others(33): Show c.-392_-369dupGACCCTCACCACTCCCACAGCCAG	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding		246		chr15	TogoVar
LRRC58_chr3_120319509_120354354	120347379	C C	CTTTTTTT others(17): Show CTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0108 a0001c0001t0003g0108	1	376	0.0027	24	c.500 others(41): Show c.500+1364_500+1365insAAAAAAAAAAAAAAAAAAAAAAAA	LRRC58	ENSG00000163428.4	transcript	ENST00000295628.4	protein_coding	1/3			chr3	TogoVar
LRRC63_chr13_46206928_46282115	46255645	A A	AAAAAAAA others(17): Show AAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0031 a0003c0006t0031	a0003c0006t0031g0184 a0003c0006t0031g0184	1	386	0.0026	24	c.122 others(43): Show c.1226+5155_1226+5156insAAAAAAAAAAAATATATATATATA	LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	7/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC63_chr13_46206928_46282115	46276854	A A	ATATATAT others(17): Show ATATATATATATATATATATATATT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19060.hp1 NA19082.hp1 NA19060.hp1 NA19082.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0034 a0002c0002t0044 a0001c0001t0034 a0002c0002t0044	a0001c0001t0034g0128 a0002c0002t0044g0166 a0001c0001t0034g0128 a0002c0002t0044g0166	2	386	0.0052	24	c.64 others(31): Show c.64_*65insATATATATATTTATATATATATAT	LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	10/10	65	INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC69_chr8_91097619_91224257	91147251	A A	ATATATAT others(17): Show ATATATATTATATATAAACATATAT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0059 a0001c0001t0001g0059	1	318	0.0031	24	c.651 others(43): Show c.651+11520_651+11543dupTATATATAAACATATATTATATAT	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC71_chr1_156915632_156938094	156928363	C C	CTCTTCTT others(17): Show CTCTTCTTCTTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01081.hp1 HG01099.hp2 others(33): Show HG00735.hp1 HG01081.hp1 HG01099.hp2 HG01256.hp1 HG01258.hp2 HG01496.hp1 HG01993.hp1 HG01993.hp2 HG02004.hp2 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02258.hp2 HG02300.hp1 HG02809.hp1 HG02818.hp1 HG02896.hp2 HG03041.hp2 HG03453.hp1 HG03490.hp2 HG03492.hp1 HG03540.hp2 HG03669.hp1 HG03927.hp2 NA18941.hp2 NA18946.hp1 NA18951.hp2 NA18961.hp1 NA18983.hp2 NA18998.hp2 NA19000.hp2 NA19030.hp2 NA19055.hp2 NA19057.hp2 NA20300.hp2 NA20752.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0015	a0001c0001 a0001c0003 a0002c0002 others(2): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004 a0015c0016	a0001c0001t0001 a0001c0003t0001 a0002c0002t0001 others(2): Show a0001c0001t0001 a0001c0003t0001 a0002c0002t0001 a0003c0004t0001 a0015c0016t0001	a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0019 others(26): Show a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0042 a0001c0001t0001g0053 a0001c0001t0001g0058 a0001c0001t0001g0121 a0001c0001t0001g0154 a0001c0001t0001g0192 a0001c0001t0001g0215 a0001c0001t0001g0242 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0256 a0001c0001t0001g0264 a0001c0001t0001g0300 a0001c0003t0001g0265 a0002c0002t0001g0103 a0002c0002t0001g0126 a0002c0002t0001g0127 a0002c0002t0001g0164 a0002c0002t0001g0165 a0002c0002t0001g0221 a0002c0002t0001g0222 a0002c0002t0001g0237 a0002c0002t0001g0238 a0003c0004t0001g0019 a0003c0004t0001g0306 a0015c0016t0001g0299	36	402	0.0896	24	c.996 others(39): Show c.996+380_996+403dupTTCTTCTTCTTCTTCTTCTTCTTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156936497	A A	AAAAAAAA others(17): Show AAAAAAAAAATAAAAAAAAATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0137 a0003c0004t0001g0137	1	402	0.0025	24	c.35 others(35): Show c.3528_*3529insAAAAAAAAATAAAAAAAAATATAT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		3404		chr1	TogoVar
LRRC73_chr6_43501968_43515346	43502076	A A	ACACACAC others(17): Show ACACACACACACACACACTCTCTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0004 a0001c0001t0004g0004	1	366	0.0027	24	c.51 others(35): Show c.5161_*5162insAGAGAGAGTGTGTGTGTGTGTGTG	LRRC73	ENSG00000204052.5	transcript	ENST00000372441.2	protein_coding		4891		chr6	TogoVar
LRRC75A_chr17_16436577_16497193	16485681	T T	TGTGTGTG others(17): Show TGTGTGTGTGTGTGTGTGTGTGTTC	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0302 a0001c0002t0001g0302	1	342	0.0029	24	c.246 others(41): Show c.246+6063_246+6064insGAACACACACACACACACACACAC	LRRC75A	ENSG00000181350.12	transcript	ENST00000470794.2	protein_coding	1/3			chr17	TogoVar
LRRC7_chr1_69562922_70149364	69650539	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG04184.hp2 NA18974.hp2 others(1): Show HG02735.hp2 HG04184.hp2 NA18974.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0048 a0001c0002t0080 a0001c0001t0001 a0001c0002t0048 a0001c0002t0080	a0001c0001t0001g0087 a0001c0001t0001g0099 a0001c0002t0048g0082 others(1): Show a0001c0001t0001g0087 a0001c0001t0001g0099 a0001c0002t0048g0082 a0001c0002t0080g0046	4	108	0.0370	24	c.3-2 others(39): Show c.3-27827_3-27826insAAAAAAAAAAAAAAAAAAAAAAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718126	A A	AAAAGAGA others(17): Show AAAAGAGAGAGAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG04115.hp2 NA18974.hp2 HG01243.hp1 HG04115.hp2 NA18974.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0044 a0001c0001t0050 a0001c0002t0048 a0001c0001t0044 a0001c0001t0050 a0001c0002t0048	a0001c0001t0044g0083 a0001c0001t0050g0070 a0001c0002t0048g0082 a0001c0001t0044g0083 a0001c0001t0050g0070 a0001c0002t0048g0082	3	108	0.0278	24	c.100 others(43): Show c.100+39653_100+39654insGAGAGAGAAAGAAAGAAAGAAAGA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718126	A A	AAAGAAAA others(17): Show AAAGAAAAGAGAGAGAGAAAGAAAG	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0091 a0001c0009t0091	a0001c0009t0091g0090 a0001c0009t0091g0090	1	108	0.0093	24	c.100 others(43): Show c.100+39650_100+39651insGAAAAGAGAGAGAGAAAGAAAGAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAGAAAGA others(17): Show GAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG04184.hp2 NA18966.hp1 NA18977.hp1 others(2): Show HG04184.hp2 NA18966.hp1 NA18977.hp1 NA19004.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0022 a0001c0001t0030 a0001c0001t0083 others(2): Show a0001c0001t0022 a0001c0001t0030 a0001c0001t0083 a0001c0002t0080 a0001c0005t0081	a0001c0001t0022g0088 a0001c0001t0030g0077 a0001c0001t0083g0044 others(2): Show a0001c0001t0022g0088 a0001c0001t0030g0077 a0001c0001t0083g0044 a0001c0002t0080g0046 a0001c0005t0081g0045	5	108	0.0463	24	c.100 others(43): Show c.100+39673_100+39696dupAGAAAGAAAGAAAGAAAGAAAGAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69750093	T T	TAAATAAA others(17): Show TAAATAAATAAATAAATAAATAATA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0069 a0001c0001t0069	a0001c0001t0069g0067 a0001c0001t0069g0067	1	108	0.0093	24	c.101 others(43): Show c.101-10096_101-10095insATAAATAAATAAATAAATAATAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69764730	C C	CAGACAGA others(17): Show CAGACAGATAGATAGATAGATAGAT	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0028 a0001c0001t0017g0028	1	108	0.0093	24	c.303 others(41): Show c.303+4340_303+4341insCAGATAGATAGATAGATAGATAGA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	3/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69781786	A A	AAAGAAAG others(17): Show AAAGAAAGAAAGAAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02735.hp2 HG01074.hp1 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0087 a0001c0001t0007g0006 a0001c0001t0001g0087 a0001c0001t0007g0006	2	108	0.0185	24	c.304 others(43): Show c.304-10254_304-10253insAAAGAAAGAAAGGAAGGAAGGAAG	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	3/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69781786	A A	AAAGAAAG others(17): Show AAAGAAAGAAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	NA18954.hp1 NA18954.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0082 a0001c0001t0082	a0001c0001t0082g0050 a0001c0001t0082g0050	1	108	0.0093	24	c.304 others(43): Show c.304-10254_304-10253insAAAGAAAGGAAGGAAGGAAGGAAG	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	3/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69781786	A A	AAAGGAAG others(17): Show AAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG02622.hp1 NA20905.hp2 HG02622.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0017 a0001c0001t0004 a0001c0001t0017	a0001c0001t0004g0010 a0001c0001t0017g0028 a0001c0001t0004g0010 a0001c0001t0017g0028	2	108	0.0185	24	c.304 others(43): Show c.304-10220_304-10197dupAAGGAAGGAAGGAAGGAAGGAAGG	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	3/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69865469	C C	CTTTTTTT others(17): Show CTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG02647.hp1 NA18977.hp1 others(1): Show HG02129.hp2 HG02647.hp1 NA18977.hp1 NA19004.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0005 a0003c0007 a0001c0001 a0001c0005 a0003c0007	a0001c0001t0022 a0001c0001t0025 a0001c0005t0081 others(1): Show a0001c0001t0022 a0001c0001t0025 a0001c0005t0081 a0003c0007t0090	a0001c0001t0022g0088 a0001c0001t0025g0011 a0001c0005t0081g0045 others(1): Show a0001c0001t0022g0088 a0001c0001t0025g0011 a0001c0005t0081g0045 a0003c0007t0090g0093	4	108	0.0370	24	c.647 others(43): Show c.647+27188_647+27211dupTTTTTTTTTTTTTTTTTTTTTTTT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	7/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	70072578	A A	ACTGCTGC others(17): Show ACTGCTGCTGCTGCTGCTGCTGCTG	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG01978.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0088 a0001c0011t0088	a0001c0011t0088g0091 a0001c0011t0088g0091	1	108	0.0093	24	c.423 others(43): Show c.4231-3481_4231-3458dupGCTGCTGCTGCTGCTGCTGCTGCT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	23/26		INFO_REALIGN_3_PRIME	chr1	TogoVar

Search by Variant

Search

Search Results (Total: 10000 hits)