Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ARFGEF1_chr8_67192658_67348781	67244266	A A	AAAAAAAA others(17): Show AAAAAAAAAAAAAAAAAAACAAAAC	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0203 a0001c0003t0004g0203	1	201	0.0050	24	c.285 others(43): Show c.2851-3977_2851-3976insGTTTTGTTTTTTTTTTTTTTTTTT	ARFGEF1	ENSG00000066777.9	transcript	ENST00000262215.8	protein_coding	19/38			chr8	TogoVar
ARFGEF1_chr8_67192658_67348781	67258818	T T	TACACACA others(17): Show TACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0004 a0001c0001t0002g0004	1	101	0.0099	24	c.223 others(41): Show c.2236-552_2236-529dupGTGTGTGTGTGTGTGTGTGTGTGT	ARFGEF1	ENSG00000066777.9	transcript	ENST00000262215.8	protein_coding	15/38			chr8	TogoVar
ARFGEF1_chr8_67192658_67348781	67343820	A A	AGCGGCGG others(17): Show AGCGGCGGCGGCGGCGGCGGCGGCG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0190	1	191	0.0052	24	c.-53 others(33): Show c.-534_-533insCGCCGCCGCCGCCGCCGCCGCCGC	ARFGEF1	ENSG00000066777.9	transcript	ENST00000262215.8	protein_coding		40		chr8	TogoVar
ARFGEF2_chr20_48916711_49041693	48918076	T T	TACATACA others(17): Show TACATACATATACATATACATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG01099.hp1 HG01109.hp1 others(38): Show HG00639.hp2 HG01099.hp1 HG01109.hp1 HG01255.hp2 HG01257.hp1 HG01516.hp1 HG01884.hp1 HG01934.hp1 HG01975.hp2 HG02071.hp1 HG02109.hp1 HG02129.hp2 HG02148.hp1 HG02486.hp1 HG02559.hp2 HG02572.hp2 HG02615.hp1 HG02622.hp1 HG02818.hp1 HG02970.hp1 HG03139.hp1 HG03490.hp1 HG03492.hp2 HG03540.hp1 HG03710.hp2 HG04228.hp1 HG06807.hp1 NA18946.hp1 NA18948.hp1 NA18948.hp2 NA18960.hp2 NA18971.hp1 NA18984.hp1 NA18998.hp2 NA19068.hp1 NA19068.hp2 NA19079.hp1 NA19082.hp2 NA19083.hp2 NA19087.hp2 NA20129.hp2	a0001 a0008 a0001 a0008	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0008c0008	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(6): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0019 a0001c0001t0020 a0001c0002t0001 a0001c0002t0005 a0001c0003t0001 a0008c0008t0002	a0001c0001t0002g0010 a0001c0001t0002g0117 a0001c0001t0002g0119 others(38): Show a0001c0001t0002g0010 a0001c0001t0002g0117 a0001c0001t0002g0119 a0001c0001t0002g0228 a0001c0001t0002g0253 a0001c0001t0002g0254 a0001c0001t0002g0255 a0001c0001t0002g0256 a0001c0001t0002g0257 a0001c0001t0002g0263 a0001c0001t0002g0264 a0001c0001t0002g0274 a0001c0001t0002g0281 a0001c0001t0003g0199 a0001c0001t0003g0206 a0001c0001t0003g0209 a0001c0001t0003g0215 a0001c0001t0003g0217 a0001c0001t0003g0246 a0001c0001t0004g0323 a0001c0001t0004g0326 a0001c0001t0004g0331 a0001c0001t0004g0335 a0001c0001t0004g0339 a0001c0001t0004g0343 a0001c0001t0004g0344 a0001c0001t0004g0346 a0001c0001t0019g0345 a0001c0001t0020g0329 a0001c0002t0001g0135 a0001c0002t0001g0183 a0001c0002t0001g0184 a0001c0002t0001g0312 a0001c0002t0005g0019 a0001c0002t0005g0023 a0001c0002t0005g0026 a0001c0002t0005g0027 a0001c0003t0001g0030 a0001c0003t0001g0053 a0001c0003t0001g0090 a0008c0008t0002g0265	41	155	0.2645	24	c.-38 others(35): Show c.-3814_-3813insACATACATATACATATACATATAC	ARFGEF2	ENSG00000124198.10	transcript	ENST00000371917.5	protein_coding		3634		chr20	TogoVar
ARFGEF2_chr20_48916711_49041693	48918076	T T	TATATACA others(17): Show TATATACATATACATATACATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00438.hp2 HG00558.hp1 HG01074.hp2 others(37): Show HG00438.hp2 HG00558.hp1 HG01074.hp2 HG01123.hp2 HG01192.hp2 HG01255.hp1 HG01952.hp2 HG01975.hp1 HG02132.hp2 HG02135.hp1 HG02273.hp2 HG02293.hp2 HG03491.hp1 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03831.hp2 HG03927.hp1 HG04228.hp2 NA18612.hp2 NA18941.hp2 NA18945.hp1 NA18949.hp2 NA18951.hp2 NA18952.hp2 NA18954.hp1 NA18956.hp1 NA18980.hp1 NA18985.hp2 NA18993.hp2 NA19011.hp1 NA19012.hp2 NA19057.hp2 NA19065.hp2 NA19081.hp2 NA19082.hp1 NA19086.hp2 NA19088.hp1 NA19090.hp2 NA21309.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0012 a0001c0002 a0001c0003 a0001c0012	a0001c0002t0001 a0001c0002t0022 a0001c0003t0001 others(1): Show a0001c0002t0001 a0001c0002t0022 a0001c0003t0001 a0001c0012t0001	a0001c0002t0001g0125 a0001c0002t0022g0197 a0001c0003t0001g0029 others(37): Show a0001c0002t0001g0125 a0001c0002t0022g0197 a0001c0003t0001g0029 a0001c0003t0001g0032 a0001c0003t0001g0034 a0001c0003t0001g0040 a0001c0003t0001g0044 a0001c0003t0001g0052 a0001c0003t0001g0057 a0001c0003t0001g0058 a0001c0003t0001g0059 a0001c0003t0001g0060 a0001c0003t0001g0061 a0001c0003t0001g0062 a0001c0003t0001g0063 a0001c0003t0001g0064 a0001c0003t0001g0067 a0001c0003t0001g0068 a0001c0003t0001g0069 a0001c0003t0001g0070 a0001c0003t0001g0071 a0001c0003t0001g0075 a0001c0003t0001g0076 a0001c0003t0001g0077 a0001c0003t0001g0079 a0001c0003t0001g0083 a0001c0003t0001g0084 a0001c0003t0001g0085 a0001c0003t0001g0086 a0001c0003t0001g0088 a0001c0003t0001g0092 a0001c0003t0001g0093 a0001c0003t0001g0094 a0001c0003t0001g0098 a0001c0003t0001g0099 a0001c0003t0001g0100 a0001c0003t0001g0102 a0001c0003t0001g0105 a0001c0003t0001g0107 a0001c0012t0001g0033	40	154	0.2597	24	c.-38 others(35): Show c.-3814_-3813insATATACATATACATATACATATAC	ARFGEF2	ENSG00000124198.10	transcript	ENST00000371917.5	protein_coding		3634		chr20	TogoVar
ARFGEF2_chr20_48916711_49041693	48961083	T T	TATAATAA others(17): Show TATAATAATAATAATAATAATAATA	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02071.hp2 NA18971.hp2 others(3): Show HG02015.hp1 HG02071.hp2 NA18971.hp2 NA18982.hp2 NA18999.hp1 NA19080.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0289 a0001c0002t0001g0291 a0001c0002t0001g0292 others(3): Show a0001c0002t0001g0289 a0001c0002t0001g0291 a0001c0002t0001g0292 a0001c0002t0001g0300 a0001c0002t0001g0306 a0001c0002t0001g0307	6	202	0.0297	24	c.839 others(41): Show c.839-2741_839-2718dupAATAATAATAATAATAATAATAAT	ARFGEF2	ENSG00000124198.10	transcript	ENST00000371917.5	protein_coding	6/38		INFO_REALIGN_3_PRIME	chr20	TogoVar
ARFGEF2_chr20_48916711_49041693	48963175	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0252 a0001c0001t0006g0252	1	207	0.0048	24	c.839 others(39): Show c.839-641_839-640insAAAAAAAAAAAAAAAAAAAAAAAA	ARFGEF2	ENSG00000124198.10	transcript	ENST00000371917.5	protein_coding	6/38		INFO_REALIGN_3_PRIME	chr20	TogoVar
ARFIP1_chr4_152774954_152917357	152795820	A A	ATTTTTTT others(17): Show ATTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19065.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0135 a0001c0001t0001g0135	1	15	0.0667	24	c.-10 others(43): Show c.-10+15603_-10+15626dupTTTTTTTTTTTTTTTTTTTTTTTT	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARFIP1_chr4_152774954_152917357	152804302	A A	ATATAACA others(17): Show ATATAACATAACATGTATTACATAT	intron_variant intron_variant	MODIFIER	NA18952.hp2 NA18955.hp1 NA18952.hp2 NA18955.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0193 a0001c0001t0003g0194 a0001c0001t0003g0193 a0001c0001t0003g0194	2	320	0.0063	24	c.-10 others(43): Show c.-10+24080_-10+24081insACATAACATGTATTACATATTATA	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARFIP1_chr4_152774954_152917357	152804423	T T	TATATATA others(17): Show TATATATAATATAACATGTATTATA	intron_variant intron_variant	MODIFIER	NA18965.hp2 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0157 a0001c0001t0001g0157	1	340	0.0029	24	c.-10 others(43): Show c.-10+24198_-10+24221dupATATATAATATAACATGTATTATA	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARFIP1_chr4_152774954_152917357	152808283	A A	ATTTTTTT others(17): Show ATTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18953.hp2 NA18953.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0185 a0001c0001t0003g0185	1	5	0.2000	24	c.-9- others(41): Show c.-9-21331_-9-21308dupTTTTTTTTTTTTTTTTTTTTTTTT	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARFRP1_chr20_63693647_63712976	63693666	A A	ACCACCAC others(17): Show ACCACCACCACCTCCACCACCACCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0010	a0001c0002t0010g0087 a0001c0002t0010g0087	1	265	0.0038	24	c.67 others(35): Show c.6776_*6777insAGGTGGTGGTGGAGGTGGTGGTGG	ARFRP1	ENSG00000101246.20	transcript	ENST00000622789.5	protein_coding		4980		chr20	TogoVar
ARFRP1_chr20_63693647_63712976	63708001	T T	TCCGCGCT others(17): Show TCCGCGCTCCGCTTCCCGGCTGCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0001 a0001c0002t0002g0001	1	294	0.0034	24	c.-16 others(33): Show c.-165_-142dupGGGCAGCCGGGAAGCGGAGCGCGG	ARFRP1	ENSG00000101246.20	transcript	ENST00000622789.5	protein_coding		26		chr20	TogoVar
ARG2_chr14_67614920_67656708	67627256	G G	GATATATA others(17): Show GATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03579.hp1 NA18522.hp1 others(1): Show HG01496.hp1 HG03579.hp1 NA18522.hp1 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006	a0001c0001t0003g0058 a0001c0001t0003g0205 a0001c0001t0004g0190 others(1): Show a0001c0001t0003g0058 a0001c0001t0003g0205 a0001c0001t0004g0190 a0001c0001t0006g0206	4	37	0.1081	24	c.184 others(41): Show c.184+6293_184+6316dupATATATATATATATATATATATAT	ARG2	ENSG00000081181.8	transcript	ENST00000261783.4	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr14	TogoVar
ARGFX_chr3_121562949_121595622	121583344	T T	TAAAGAAA others(17): Show TAAAGAAAAAACCCTTTTCCTTTAG	intron_variant intron_variant	MODIFIER	NA19090.hp2 NA19090.hp2	a0005 a0005	a0005c0009 a0005c0009	a0005c0009t0049 a0005c0009t0049	a0005c0009t0049g0275 a0005c0009t0049g0275	1	408	0.0025	24	c.221 others(41): Show c.221-1551_221-1550insAGAAAGAAAAAACCCTTTTCCTTT	ARGFX	ENSG00000186103.5	transcript	ENST00000334384.5	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
ARHGAP10_chr4_147727088_148077776	147798781	C C	CTATATAT others(17): Show CTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0045 a0001c0004t0001g0045	1	56	0.0179	24	c.155 others(43): Show c.155-23933_155-23910dupTATATATATATATATATATATATA	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	147873681	A A	AACACACA others(17): Show AACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01884.hp2 HG02622.hp1 others(3): Show HG01243.hp1 HG01884.hp2 HG02622.hp1 HG02922.hp2 HG03239.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 a0001c0001 a0001c0002 a0001c0006	a0001c0001t0001 a0001c0002t0001 a0001c0006t0001 a0001c0001t0001 a0001c0002t0001 a0001c0006t0001	a0001c0001t0001g0026 a0001c0001t0001g0038 a0001c0002t0001g0015 others(3): Show a0001c0001t0001g0026 a0001c0001t0001g0038 a0001c0002t0001g0015 a0001c0002t0001g0018 a0001c0002t0001g0090 a0001c0006t0001g0039	6	25	0.2400	24	c.703 others(41): Show c.703-1321_703-1298dupACACACACACACACACACACACAC	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148017680	A A	ATATATAT others(17): Show ATATATATATATATATATATATGAG	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02818.hp2 HG02109.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0051 a0001c0001t0001g0046 a0001c0001t0001g0051	2	67	0.0299	24	c.171 others(43): Show c.1717-5580_1717-5579insATATATATATATATATATGAGTAT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148043614	A A	AATATATA others(17): Show AATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	10	0.1000	24	c.186 others(43): Show c.1868-3263_1868-3240dupATATATATATATATATATATATAT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	19/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP12_chr10_31800398_31933831	31933240	A A	ATATATAT others(17): Show ATATATATATATATATATATATATC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0036 a0001c0001t0036	a0001c0001t0036g0039 a0001c0001t0036g0039	1	273	0.0037	24	c.-46 others(35): Show c.-4669_-4668insGATATATATATATATATATATATA	ARHGAP12	ENSG00000165322.18	transcript	ENST00000344936.7	protein_coding		4410		chr10	TogoVar
ARHGAP15_chr2_143124419_143773352	143165960	G G	GAGAAAGA others(17): Show GAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG02698.hp2 HG00733.hp1 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0045 a0001c0001t0001g0042 a0001c0001t0001g0045	2	27	0.0741	24	c.165 others(43): Show c.165+10326_165+10349dupAGAAAGAAAGAAAGAAAGAAAGAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143166001	A A	AGAAAGAA others(17): Show AGAAAGAAAGAAAGAAAGAAGGAAG	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01256.hp2 HG02523.hp2 others(6): Show HG00621.hp2 HG01256.hp2 HG02523.hp2 HG02602.hp2 HG03139.hp1 NA18747.hp1 NA18962.hp2 NA18970.hp1 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 others(6): Show a0001c0001t0001g0015 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0036 a0001c0001t0001g0051 a0001c0001t0001g0066 a0001c0001t0001g0110 a0001c0001t0001g0124 a0001c0001t0001g0129	9	44	0.2045	24	c.165 others(43): Show c.165+10349_165+10350insAGAAAGAAAGAAAGAAGGAAGGAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(17): Show TGTGTGTGCGCGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0105 a0001c0002t0001g0105	1	22	0.0455	24	c.475 others(43): Show c.475-21634_475-21633insTGTGTGCGCGCGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(17): Show TGTGTGTGTGCGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	NA19088.hp2 NA19088.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0054 a0001c0003t0001g0054	1	22	0.0455	24	c.475 others(43): Show c.475-21634_475-21633insTGTGTGTGCGCGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(17): Show TGTGTGTGTGTGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	22	0.0455	24	c.475 others(43): Show c.475-21634_475-21633insTGTGTGTGTGCGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143413966	T T	TGTGTGTG others(17): Show TGTGTGTGTGTGTGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	NA18955.hp2 NA19043.hp1 NA18955.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0102 a0001c0001t0001g0005 a0001c0001t0001g0102	2	23	0.0870	24	c.475 others(43): Show c.475-21634_475-21633insTGTGTGTGTGTGCGCGCGCGCGCG	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143470699	G G	GTATATAT others(17): Show GTATATATATATGTATATATGTGTA	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00621.hp2 HG01358.hp2 others(24): Show HG00609.hp1 HG00621.hp2 HG01358.hp2 HG01496.hp1 HG02071.hp2 HG02148.hp1 HG02300.hp2 HG02523.hp1 HG02572.hp2 HG02615.hp1 HG03491.hp1 HG03654.hp1 HG03710.hp2 HG04199.hp1 NA18612.hp2 NA18747.hp2 NA18947.hp2 NA18948.hp2 NA18955.hp2 NA18962.hp1 NA18975.hp2 NA18991.hp2 NA19000.hp2 NA19006.hp1 NA19062.hp2 NA19068.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0019 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0032 a0001c0001t0001g0037 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0064 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0073 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0086 a0001c0001t0001g0102 a0001c0001t0001g0115 a0001c0001t0001g0140 a0001c0001t0001g0145 a0001c0001t0001g0147 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0157 a0001c0001t0001g0162	27	125	0.2160	24	c.704 others(43): Show c.704-16665_704-16664insATGTATATATGTGTATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	8/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143656934	G G	GGTGTGTG others(17): Show GGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02559.hp2 NA21309.hp1 HG02071.hp2 HG02559.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0061 a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0061	3	12	0.2500	24	c.113 others(45): Show c.1138+32684_1138+32707dupGTGTGTGTGTGTGTGTGTGTGTGT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673746	G G	GTATATAT others(17): Show GTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01496.hp2 NA18991.hp1 HG01496.hp2 NA18991.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0033 a0001c0001t0001g0014 a0001c0001t0001g0033	2	136	0.0147	24	c.113 others(45): Show c.1139-29672_1139-29671insATATATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673748	G G	GTATATAT others(17): Show GTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	117	0.0085	24	c.113 others(45): Show c.1139-29670_1139-29669insATATATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673756	G G	GTATATAT others(17): Show GTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02886.hp2 NA18612.hp2 others(1): Show HG01071.hp2 HG02886.hp2 NA18612.hp2 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0021 a0001c0001t0001g0047 a0001c0001t0001g0152 others(1): Show a0001c0001t0001g0021 a0001c0001t0001g0047 a0001c0001t0001g0152 a0001c0002t0001g0105	4	90	0.0444	24	c.113 others(45): Show c.1139-29662_1139-29661insATATATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTATATAT others(17): Show GTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG04199.hp2 NA18975.hp2 others(1): Show HG02523.hp1 HG04199.hp2 NA18975.hp2 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0050 a0001c0001t0001g0053 others(1): Show a0001c0001t0001g0037 a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0130	4	21	0.1905	24	c.113 others(45): Show c.1139-29658_1139-29635dupTATATATATATATATATATATATA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTGTATAT others(17): Show GTGTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0101 a0001c0001t0001g0101	1	18	0.0556	24	c.113 others(45): Show c.1139-29660_1139-29659insGTATATATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTGTGTGT others(17): Show GTGTGTGTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18955.hp2 NA18962.hp2 NA18955.hp2 NA18962.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0036 a0001c0001t0001g0102 a0001c0001t0001g0036 a0001c0001t0001g0102	2	19	0.1053	24	c.113 others(45): Show c.1139-29660_1139-29659insGTGTGTATATATATATATATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP17_chr16_24914389_25020369	24961911	T T	TTATATAT others(17): Show TTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02965.hp2 HG02486.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0002 a0001c0001t0001 a0001c0004t0002	a0001c0001t0001g0227 a0001c0004t0002g0103 a0001c0001t0001g0227 a0001c0004t0002g0103	2	102	0.0196	24	c.574 others(41): Show c.574-1933_574-1932insTATATATATATATATATATATATA	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	7/19			chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	24982980	A A	ATATATTT others(17): Show ATATATTTATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0114 a0001c0001t0005g0114	1	237	0.0042	24	c.54- others(39): Show c.54-3976_54-3975insAATATATATATATATATAAATATA	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	1/19			chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	25020190	C C	CGGAAGGA others(17): Show CGGAAGGAAGGAAGGAAGGAAGGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp1 HG03098.hp1 HG03098.hp2 others(1): Show HG02723.hp1 HG03098.hp1 HG03098.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 others(1): Show a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0004g0012	4	98	0.0408	24	c.-49 others(35): Show c.-4930_-4929insTTCCTTCCTTCCTTCCTTCCTTCC	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		4822		chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	25020228	G G	GAAGGAAG others(17): Show GAAGGAAGGAAGGAAGGAAGAAAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp1 HG02818.hp2 HG03516.hp1 HG02145.hp1 HG02818.hp2 HG03516.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0208 a0001c0003t0003g0214 a0001c0003t0003g0217 a0001c0003t0003g0208 a0001c0003t0003g0214 a0001c0003t0003g0217	3	74	0.0405	24	c.-49 others(35): Show c.-4968_-4967insTCTTTCTTCCTTCCTTCCTTCCTT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		4860		chr16	TogoVar
ARHGAP17_chr16_24914389_25020369	25020228	G G	GAAGGAAG others(17): Show GAAGGAAGGAAGGAAGGAAGGAAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02257.hp2 HG02451.hp1 others(2): Show HG02145.hp2 HG02257.hp2 HG02451.hp1 NA18995.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0007 a0001c0004t0002 a0001c0001t0001 a0001c0001t0007 a0001c0004t0002	a0001c0001t0001g0001 a0001c0001t0001g0025 a0001c0001t0001g0026 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0007g0020 a0001c0004t0002g0113	5	76	0.0658	24	c.-49 others(35): Show c.-4968_-4967insTCTTCCTTCCTTCCTTCCTTCCTT	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding		4860		chr16	TogoVar
ARHGAP18_chr6_129571132_129715177	129712433	T T	TAGAGACT others(17): Show TAGAGACTGGGTTTCTCCATGTTGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0118 a0001c0001t0008g0118	1	236	0.0042	24	c.-22 others(35): Show c.-2298_-2297insCCAACATGGAGAAACCCAGTCTCT	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding		2257		chr6	TogoVar
ARHGAP19_chr10_97217179_97297637	97218941	G G	GTGTGTGT others(17): Show GTGTGTGTGTGTGTGTGTGTGTGTA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0076 a0001c0003t0002g0076	1	119	0.0084	24	c.71 others(35): Show c.7180_*7181insTACACACACACACACACACACACA	ARHGAP19	ENSG00000213390.11	transcript	ENST00000358531.9	protein_coding		3237		chr10	TogoVar
ARHGAP20_chr11_110572043_110717437	110687035	C C	CATATATA others(17): Show CATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01169.hp1 HG02723.hp1 others(5): Show HG00733.hp2 HG01169.hp1 HG02723.hp1 HG03831.hp2 NA18747.hp2 NA18954.hp2 NA18978.hp2 NA19065.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0009 a0002c0003 a0001c0001 a0001c0009 a0002c0003	a0001c0001t0001 a0001c0009t0002 a0002c0003t0007 a0001c0001t0001 a0001c0009t0002 a0002c0003t0007	a0001c0001t0001g0134 a0001c0001t0001g0167 a0001c0001t0001g0168 others(5): Show a0001c0001t0001g0134 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0181 a0001c0001t0001g0184 a0001c0001t0001g0191 a0001c0009t0002g0193 a0002c0003t0007g0205	8	133	0.0602	24	c.188 others(41): Show c.188+3511_188+3512insATATATATATATATATATATATAT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(17): Show ATATATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0166 a0001c0001t0001g0166	1	140	0.0071	24	c.495 others(41): Show c.495+1013_495+1014insAAAATATATATATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(17): Show ATATATATATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02976.hp2 HG03225.hp2 HG02559.hp2 HG02976.hp2 HG03225.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0001 a0001c0001t0001 a0004c0004t0001	a0001c0001t0001g0015 a0004c0004t0001g0039 a0004c0004t0001g0092 a0001c0001t0001g0015 a0004c0004t0001g0039 a0004c0004t0001g0092	3	142	0.0211	24	c.495 others(41): Show c.495+1013_495+1014insAAAAAATATATATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP22_chr10_48441036_48610073	48577793	C C	CTTTTACT others(17): Show CTTTTACTGCTCTTTTTTGGTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01167.hp2 HG02056.hp1 others(12): Show HG00735.hp1 HG01167.hp2 HG02056.hp1 HG02056.hp2 HG02280.hp1 HG02486.hp1 HG02630.hp1 HG02698.hp2 HG02723.hp1 HG03225.hp1 HG03486.hp1 NA18942.hp1 NA18981.hp1 NA18988.hp1 NA19074.hp2	a0001 a0006 a0009 a0001 a0006 a0009	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0006c0017 a0009c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0002t0002 a0001c0003t0004 a0001c0004t0004 a0006c0017t0002 a0009c0020t0009	a0001c0001t0001g0050 a0001c0001t0001g0092 a0001c0001t0001g0097 others(12): Show a0001c0001t0001g0050 a0001c0001t0001g0092 a0001c0001t0001g0097 a0001c0001t0001g0100 a0001c0001t0002g0007 a0001c0001t0002g0053 a0001c0001t0002g0184 a0001c0001t0003g0205 a0001c0001t0009g0263 a0001c0002t0002g0190 a0001c0003t0004g0183 a0001c0004t0004g0108 a0001c0004t0004g0185 a0006c0017t0002g0052 a0009c0020t0009g0262	15	251	0.0598	24	c.234 others(41): Show c.234+5159_234+5160insAAAAACCAAAAAAGAGCAGTAAAA	ARHGAP22	ENSG00000128805.15	transcript	ENST00000249601.9	protein_coding	2/9			chr10	TogoVar
ARHGAP23_chr17_38423464_38517385	38513074	T T	TTAAATAT others(17): Show TTAAATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp2 HG03195.hp2 HG03209.hp2 others(4): Show HG02258.hp2 HG03195.hp2 HG03209.hp2 HG03516.hp2 HG04199.hp1 NA18940.hp1 NA21309.hp2	a0001 a0008 a0019 a0001 a0008 a0019	a0001c0004 a0001c0011 a0001c0012 others(3): Show a0001c0004 a0001c0011 a0001c0012 a0001c0027 a0008c0029 a0019c0030	a0001c0004t0001 a0001c0011t0006 a0001c0012t0003 others(3): Show a0001c0004t0001 a0001c0011t0006 a0001c0012t0003 a0001c0027t0005 a0008c0029t0001 a0019c0030t0001	a0001c0004t0001g0062 a0001c0011t0006g0073 a0001c0011t0006g0076 others(4): Show a0001c0004t0001g0062 a0001c0011t0006g0073 a0001c0011t0006g0076 a0001c0012t0003g0051 a0001c0027t0005g0155 a0008c0029t0001g0285 a0019c0030t0001g0167	7	58	0.1207	24	c.21 others(35): Show c.2102_*2103insTAAATATATATATATATATATATA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		690		chr17	TogoVar
ARHGAP24_chr4_85470150_86007666	85487669	C C	CATATATT others(17): Show CATATATTTATTATATTATATAAAT	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01167.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0026	1	107	0.0093	24	c.-21 others(43): Show c.-21+12145_-21+12168dupTATATTATATAAATATATATTTAT	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85813818	T T	TTATATAT others(17): Show TTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG06807.hp2 HG02109.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0007t0003 a0001c0001t0001 a0001c0007t0003	a0001c0001t0001g0048 a0001c0007t0003g0070 a0001c0001t0001g0048 a0001c0007t0003g0070	2	46	0.0435	24	c.268 others(43): Show c.268+91848_268+91871dupATATATATATATATATATATATAT	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP24_chr4_85470150_86007666	85827461	C C	CGTGTGTG others(17): Show CGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0054 a0001c0001t0021g0054	1	16	0.0625	24	c.269 others(43): Show c.269-96154_269-96131dupGTGTGTGTGTGTGTGTGTGTGTGT	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP26_chr5_142765377_143234007	142949165	C C	CAGAGAGA others(17): Show CAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03490.hp1 HG04228.hp1 HG03490.hp1 HG04228.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0002 a0001c0003t0001 a0001c0003t0002	a0001c0003t0001g0149 a0001c0003t0002g0146 a0001c0003t0001g0149 a0001c0003t0002g0146	2	91	0.0220	24	c.110 others(45): Show c.1107+17073_1107+17096dupAGAGAGAGAGAGAGAGAGAGAGAG	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar

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