Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
APBB2_chr4_40805027_41219542	40964753	A A	ACACACAC others(18): Show ACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18990.hp2 NA18990.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0052 a0001c0003t0001g0052	1	192	0.0052	25	c.836 others(44): Show c.836-19681_836-19680insGTGTGTGTGTGTGTGTGTGTGTGTG	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APBB2_chr4_40805027_41219542	40982354	G G	GGAAAGAA others(18): Show GGAAAGAAAGAAAGAAAGAAAAGAAA	intron_variant intron_variant	MODIFIER	NA18960.hp1 NA18960.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0012 a0001c0003t0012	a0001c0003t0012g0010 a0001c0003t0012g0010	1	192	0.0052	25	c.835 others(44): Show c.835+31228_835+31229insTTTCTTTTCTTTCTTTCTTTCTTTC	APBB2	ENSG00000163697.18	transcript	ENST00000508593.6	protein_coding	6/17			chr4	TogoVar
APC2_chr19_1445121_1478244	1457895	C C	CCGGGGGG others(18): Show CCGGGGGGGGGGGGGGGGGGGGGGGG	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02895.hp1 HG02486.hp2 HG02895.hp1	a0001 a0012 a0001 a0012	a0001c0062 a0012c0065 a0001c0062 a0012c0065	a0001c0062t0030 a0012c0065t0004 a0001c0062t0030 a0012c0065t0004	a0001c0062t0030g0151 a0012c0065t0004g0057 a0001c0062t0030g0151 a0012c0065t0004g0057	2	350	0.0057	25	c.120 others(40): Show c.1208-70_1208-69insCGGGGGGGGGGGGGGGGGGGGGGGG	APC2	ENSG00000115266.12	transcript	ENST00000590469.6	protein_coding	9/14			chr19	TogoVar
APEH_chr3_49669351_49688971	49673087	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	318	0.0031	25	c.-13 others(36): Show c.-1315_-1314insTTTTTTTTTTTTTTTTTTTTTTTTT	APEH	ENSG00000164062.13	transcript	ENST00000296456.10	protein_coding		1263		chr3	TogoVar
APELA_chr4_164872178_164902527	164873332	A A	AGGAAGGA others(18): Show AGGAAGGAAGAAGGAAGGAAGGAAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0269 a0001c0001t0001g0269	1	434	0.0023	25	c.-40 others(36): Show c.-4000_-3999insGGAAGGAAGAAGGAAGGAAGGAAGG	APELA	ENSG00000248329.6	transcript	ENST00000507152.6	protein_coding		3845		chr4	TogoVar
APELA_chr4_164872178_164902527	164878196	A A	AAGAAGAA others(18): Show AAGAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0316 a0001c0001t0001g0316	1	434	0.0023	25	c.77- others(38): Show c.77-723_77-722insGAAGAAAGAAAGAAAGAAAGAAAGA	APELA	ENSG00000248329.6	transcript	ENST00000507152.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
APELA_chr4_164872178_164902527	164878196	A A	AGAAAGAA others(18): Show AGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02683.hp1 NA19005.hp1 NA20300.hp2 HG02683.hp1 NA19005.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0318 a0001c0001t0001g0319 a0001c0001t0001g0320 a0001c0001t0001g0318 a0001c0001t0001g0319 a0001c0001t0001g0320	3	434	0.0069	25	c.77- others(38): Show c.77-724_77-723insGAAAGAAAGAAAGAAAGAAAGAAAG	APELA	ENSG00000248329.6	transcript	ENST00000507152.6	protein_coding	1/2			chr4	TogoVar
API5_chr11_43306996_43349529	43310789	T T	TATATATT others(18): Show TATATATTATTATCTTAATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00558.hp1 HG00642.hp1 HG00735.hp1 others(27): Show HG00558.hp1 HG00642.hp1 HG00735.hp1 HG00738.hp2 HG01069.hp2 HG01074.hp2 HG01175.hp1 HG01256.hp2 HG01257.hp2 HG01361.hp2 HG01884.hp2 HG01943.hp1 HG01981.hp1 HG02056.hp1 HG02080.hp2 HG02129.hp2 HG02145.hp2 HG02280.hp2 HG02300.hp1 HG02486.hp2 HG02572.hp2 HG02723.hp1 HG02738.hp1 HG03209.hp1 HG03540.hp2 HG03654.hp1 NA18747.hp2 NA18943.hp1 NA18994.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0009 others(18): Show a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0046 a0001c0001t0001g0070 a0001c0001t0001g0155 a0001c0001t0001g0170 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0002g0036 a0001c0001t0002g0162	30	384	0.0781	25	c.-13 others(36): Show c.-1339_-1338insATATATTATTATCTTAATATATATA	API5	ENSG00000166181.13	transcript	ENST00000531273.6	protein_coding		1206		chr11	TogoVar
APLF_chr2_68462585_68585162	68518404	A A	ATATTATT others(18): Show ATATTATTATATATTATATAATAATT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02572.hp2 HG02717.hp2 others(6): Show HG02257.hp1 HG02572.hp2 HG02717.hp2 HG02965.hp1 HG03130.hp1 HG03139.hp2 HG03225.hp1 HG03471.hp1 NA18906.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0005 a0003c0003t0005	a0003c0003t0005g0105 a0003c0003t0005g0127 a0003c0003t0005g0128 others(6): Show a0003c0003t0005g0105 a0003c0003t0005g0127 a0003c0003t0005g0128 a0003c0003t0005g0129 a0003c0003t0005g0130 a0003c0003t0005g0131 a0003c0003t0005g0132 a0003c0003t0005g0133 a0003c0003t0005g0134	9	176	0.0511	25	c.622 others(42): Show c.622+4730_622+4731insTATATATTATATAATAATTTATTAT	APLF	ENSG00000169621.11	transcript	ENST00000303795.9	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
APLF_chr2_68462585_68585162	68519068	A A	AATAATAT others(18): Show AATAATATATAATATATTATTAATAT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0004 a0003c0003t0004	a0003c0003t0004g0119 a0003c0003t0004g0119	1	176	0.0057	25	c.622 others(42): Show c.622+5394_622+5395insTATAATATATTATTAATATATAATA	APLF	ENSG00000169621.11	transcript	ENST00000303795.9	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
APOA1_chr11_116830751_116842622	116842618	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp2 HG01257.hp1 HG02145.hp2 others(4): Show HG01081.hp2 HG01257.hp1 HG02145.hp2 HG02280.hp2 HG02886.hp1 HG02970.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	7	448	0.0156	25	c.-50 others(36): Show c.-5035_-5034insAAAAAAAAAAAAAAAAAAAAAAAAA	APOA1	ENSG00000118137.10	transcript	ENST00000236850.5	protein_coding		4997		chr11	TogoVar
APOA4_chr11_116815700_116828304	116818070	T T	TATATCTA others(18): Show TATATCTATATGATATCTATATATGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp2 HG02630.hp1 HG02895.hp2 others(1): Show HG02486.hp2 HG02630.hp1 HG02895.hp2 HG02897.hp2	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0001 a0001c0010t0001	a0001c0010t0001g0014 a0001c0010t0001g0014	4	462	0.0087	25	c.27 others(36): Show c.2796_*2797insTCATATATAGATATCATATAGATAT	APOA4	ENSG00000110244.7	transcript	ENST00000357780.5	protein_coding		2629		chr11	TogoVar
APOC1_chr19_44909608_44924346	44923473	C C	CCCAATAT others(18): Show CCCAATATAGGAAAAACCACTGAACA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0053	1	436	0.0023	25	c.42 others(36): Show c.4243_*4244insCCAATATAGGAAAAACCACTGAACA	APOC1	ENSG00000130208.10	transcript	ENST00000592535.6	protein_coding		4128		chr19	TogoVar
APOF_chr12_56355568_56367857	56363211	A A	AAAAATAT others(18): Show AAAAATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG03041.hp2 HG03130.hp1 HG02109.hp1 HG03041.hp2 HG03130.hp1	a0002 a0002	a0002c0003 a0002c0004 a0002c0003 a0002c0004	a0002c0003t0001 a0002c0003t0002 a0002c0004t0002 a0002c0003t0001 a0002c0003t0002 a0002c0004t0002	a0002c0003t0001g0022 a0002c0003t0002g0002 a0002c0004t0002g0004 a0002c0003t0001g0022 a0002c0003t0002g0002 a0002c0004t0002g0004	3	278	0.0108	25	c.-46 others(34): Show c.-467_-466insATATATATATATATATATATATTTT	APOF	ENSG00000175336.10	transcript	ENST00000398189.4	protein_coding		355		chr12	TogoVar
APOF_chr12_56355568_56367857	56363211	A A	AAATATAT others(18): Show AAATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01167.hp1 HG02451.hp1 NA19043.hp2 others(1): Show HG01167.hp1 HG02451.hp1 NA19043.hp2 NA19240.hp2	a0002 a0002	a0002c0002 a0002c0003 a0002c0004 a0002c0002 a0002c0003 a0002c0004	a0002c0002t0002 a0002c0003t0002 a0002c0004t0006 a0002c0002t0002 a0002c0003t0002 a0002c0004t0006	a0002c0002t0002g0003 a0002c0003t0002g0002 a0002c0004t0006g0017 a0002c0002t0002g0003 a0002c0003t0002g0002 a0002c0004t0006g0017	4	278	0.0144	25	c.-46 others(34): Show c.-467_-466insATATATATATATATATATATATATT	APOF	ENSG00000175336.10	transcript	ENST00000398189.4	protein_coding		355		chr12	TogoVar
APOH_chr17_66207033_66234415	66221416	G G	GAAGGAAG others(18): Show GAAGGAAGGAAGGAAGGAAGGAAGGA	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01109.hp1 HG01243.hp2 others(9): Show HG01074.hp1 HG01109.hp1 HG01243.hp2 HG01884.hp1 HG02683.hp2 HG02809.hp2 HG03130.hp1 HG03516.hp2 HG03579.hp2 NA19003.hp2 NA19070.hp2 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0011 a0001c0001 a0002c0002 a0002c0011	a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 others(1): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 a0002c0011t0002	a0001c0001t0001g0078 a0001c0001t0001g0190 a0001c0001t0001g0191 others(8): Show a0001c0001t0001g0078 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0275 a0001c0001t0001g0293 a0001c0001t0001g0311 a0002c0002t0001g0099 a0002c0002t0001g0102 a0002c0002t0002g0085 a0002c0011t0002g0013	12	386	0.0311	25	c.416 others(40): Show c.416-675_416-674insTCCTTCCTTCCTTCCTTCCTTCCTT	APOH	ENSG00000091583.11	transcript	ENST00000205948.11	protein_coding	4/7			chr17	TogoVar
APOH_chr17_66207033_66234415	66224671	G G	GGGAAAGG others(18): Show GGGAAAGGAAAGGAAAGGAAAGGAAA	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0085 a0002c0002t0002g0085	1	386	0.0026	25	c.339 others(40): Show c.339-898_339-897insTTTCCTTTCCTTTCCTTTCCTTTCC	APOH	ENSG00000091583.11	transcript	ENST00000205948.11	protein_coding	3/7			chr17	TogoVar
APOH_chr17_66207033_66234415	66224676	G G	GGGAAAGG others(18): Show GGGAAAGGAAAGGAAAGGAAAGGAAA	intron_variant intron_variant	MODIFIER	HG01943.hp2 NA19065.hp1 HG01943.hp2 NA19065.hp1	a0001 a0009 a0001 a0009	a0001c0001 a0009c0009 a0001c0001 a0009c0009	a0001c0001t0001 a0009c0009t0001 a0001c0001t0001 a0009c0009t0001	a0001c0001t0001g0310 a0009c0009t0001g0084 a0001c0001t0001g0310 a0009c0009t0001g0084	2	386	0.0052	25	c.339 others(40): Show c.339-903_339-902insTTTCCTTTCCTTTCCTTTCCTTTCC	APOH	ENSG00000091583.11	transcript	ENST00000205948.11	protein_coding	3/7			chr17	TogoVar
APOH_chr17_66207033_66234415	66224691	G G	GGGAAGGG others(18): Show GGGAAGGGAAGGGAAAGGAAAGGAAA	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0239 a0002c0002t0002g0239	1	386	0.0026	25	c.339 others(40): Show c.339-918_339-917insTTTCCTTTCCTTTCCCTTCCCTTCC	APOH	ENSG00000091583.11	transcript	ENST00000205948.11	protein_coding	3/7			chr17	TogoVar
APOH_chr17_66207033_66234415	66224691	G G	GGGAAGGG others(18): Show GGGAAGGGAAGGGAAGGGAAAGGAAA	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0002 a0005c0005t0002	a0005c0005t0002g0120 a0005c0005t0002g0120	1	386	0.0026	25	c.339 others(40): Show c.339-918_339-917insTTTCCTTTCCCTTCCCTTCCCTTCC	APOH	ENSG00000091583.11	transcript	ENST00000205948.11	protein_coding	3/7			chr17	TogoVar
APOL5_chr22_35712872_35734483	35717235	A A	AAATATAT others(18): Show AAATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0069 a0002c0002t0001g0069	1	401	0.0025	25	c.-63 others(34): Show c.-637_-636insAATATATATATATATATATATATAT	APOL5	ENSG00000128313.2	transcript	ENST00000249044.2	protein_coding		636		chr22	TogoVar
APOOL_chrX_84998877_85098315	85038524	G G	GTTTTTTT others(18): Show GTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0110 a0001c0001t0110	a0001c0001t0110g0025 a0001c0001t0110g0025	1	256	0.0039	25	c.16- others(40): Show c.16-7920_16-7896dupTTTTTTTTTTTTTTTTTTTTTTTTT	APOOL	ENSG00000155008.16	transcript	ENST00000373173.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chrX	TogoVar
APOO_chrX_23828353_23912938	23829567	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0057	1	269	0.0037	25	c.40 others(36): Show c.4074_*4075insATATATATATATATATATATATATA	APOO	ENSG00000184831.14	transcript	ENST00000379226.9	protein_coding		3785		chrX	TogoVar
APOO_chrX_23828353_23912938	23829571	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02165.hp1 HG02165.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0061 a0001c0001t0001g0061	1	269	0.0037	25	c.40 others(36): Show c.4070_*4071insATATATATATATATATATATATATA	APOO	ENSG00000184831.14	transcript	ENST00000379226.9	protein_coding		3781		chrX	TogoVar
APOO_chrX_23828353_23912938	23849583	T T	TAAAAAAA others(18): Show TAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG03491.hp1 HG03492.hp1 others(3): Show HG01516.hp2 HG03491.hp1 HG03492.hp1 HG03927.hp2 NA18946.hp2 NA18969.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0116 a0001c0001t0003g0117 a0001c0001t0003g0224 others(3): Show a0001c0001t0003g0116 a0001c0001t0003g0117 a0001c0001t0003g0224 a0001c0001t0003g0232 a0001c0001t0003g0237 a0001c0001t0003g0248	6	269	0.0223	25	c.561 others(42): Show c.561+6694_561+6718dupTTTTTTTTTTTTTTTTTTTTTTTTT	APOO	ENSG00000184831.14	transcript	ENST00000379226.9	protein_coding	7/8			chrX	TogoVar
APPL1_chr3_57222729_57278471	57262385	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01358.hp1 NA18982.hp2 HG01071.hp2 HG01358.hp1 NA18982.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0009 a0005c0007 a0001c0001 a0001c0009 a0005c0007	a0001c0001t0002 a0001c0009t0002 a0005c0007t0002 a0001c0001t0002 a0001c0009t0002 a0005c0007t0002	a0001c0001t0002g0136 a0001c0009t0002g0100 a0005c0007t0002g0197 a0001c0001t0002g0136 a0001c0009t0002g0100 a0005c0007t0002g0197	3	266	0.0113	25	c.184 others(44): Show c.1842+1612_1842+1636dupTTTTTTTTTTTTTTTTTTTTTTTTT	APPL1	ENSG00000157500.12	transcript	ENST00000288266.8	protein_coding	19/21		INFO_REALIGN_3_PRIME	chr3	TogoVar
AQR_chr15_34846782_34974742	34895187	A A	AAAAAAAA others(18): Show AAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19067.hp1 NA19067.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0047 a0001c0001t0047	a0001c0001t0047g0007 a0001c0001t0047g0007	1	312	0.0032	25	c.246 others(44): Show c.2461-1415_2461-1414insATATATATATATATATATTTTTTTT	AQR	ENSG00000021776.11	transcript	ENST00000156471.10	protein_coding	22/34			chr15	TogoVar
AQR_chr15_34846782_34974742	34895187	A A	AAAAATAT others(18): Show AAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00621.hp1 NA18975.hp2 HG00621.hp1 NA18975.hp2	a0001 a0001	a0001c0001 a0001c0016 a0001c0001 a0001c0016	a0001c0001t0001 a0001c0016t0001 a0001c0001t0001 a0001c0016t0001	a0001c0001t0001g0024 a0001c0016t0001g0032 a0001c0001t0001g0024 a0001c0016t0001g0032	2	312	0.0064	25	c.246 others(44): Show c.2461-1415_2461-1414insATATATATATATATATATATATTTT	AQR	ENSG00000021776.11	transcript	ENST00000156471.10	protein_coding	22/34			chr15	TogoVar
ARFGEF1_chr8_67192658_67348781	67218207	A A	AAATATAT others(18): Show AAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0095 a0001c0001t0001g0095	1	208	0.0048	25	c.433 others(40): Show c.4339-70_4339-69insATATATATATATATATATATATATT	ARFGEF1	ENSG00000066777.9	transcript	ENST00000262215.8	protein_coding	30/38			chr8	TogoVar
ARFGEF2_chr20_48916711_49041693	48950805	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18971.hp2 NA18971.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0307 a0001c0002t0001g0307	1	352	0.0028	25	c.277 others(40): Show c.277-518_277-517insTATATATATATATATATATATATAT	ARFGEF2	ENSG00000124198.10	transcript	ENST00000371917.5	protein_coding	3/38			chr20	TogoVar
ARFGEF2_chr20_48916711_49041693	48950807	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18949.hp1 NA18949.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0284 a0001c0002t0001g0284	1	352	0.0028	25	c.277 others(40): Show c.277-516_277-515insTATATATATATATATATATATATAT	ARFGEF2	ENSG00000124198.10	transcript	ENST00000371917.5	protein_coding	3/38			chr20	TogoVar
ARFGEF2_chr20_48916711_49041693	48963175	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02055.hp2 NA19240.hp2 HG02055.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0002 a0001c0001t0006	a0001c0001t0002g0008 a0001c0001t0006g0274 a0001c0001t0002g0008 a0001c0001t0006g0274	2	352	0.0057	25	c.839 others(40): Show c.839-641_839-640insAAAAAAAAAAAAAAAAAAAAAAAAA	ARFGEF2	ENSG00000124198.10	transcript	ENST00000371917.5	protein_coding	6/38		INFO_REALIGN_3_PRIME	chr20	TogoVar
ARFIP1_chr4_152774954_152917357	152795820	A A	ATTTTTTT others(18): Show ATTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0197 a0001c0002t0002g0197	1	342	0.0029	25	c.-10 others(44): Show c.-10+15602_-10+15626dupTTTTTTTTTTTTTTTTTTTTTTTTT	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARFIP1_chr4_152774954_152917357	152804268	T T	TAATATAT others(18): Show TAATATATAACATAACATGTATTACA	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02897.hp1 HG03579.hp1 HG02896.hp1 HG02897.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0264 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0264	3	342	0.0088	25	c.-10 others(44): Show c.-10+24042_-10+24043insAATATATAACATAACATGTATTACA	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8			chr4	TogoVar
ARFIP1_chr4_152774954_152917357	152808283	A A	ATTTTTTT others(18): Show ATTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18950.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0135 a0001c0001t0003g0135	1	342	0.0029	25	c.-9- others(42): Show c.-9-21332_-9-21308dupTTTTTTTTTTTTTTTTTTTTTTTTT	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	147784805	T T	TAATATAT others(18): Show TAATATATTACAAAATATATATTATA	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01071.hp1 HG02258.hp1 others(14): Show HG01070.hp2 HG01071.hp1 HG02258.hp1 HG02258.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02922.hp2 HG02976.hp1 HG03130.hp2 HG03195.hp1 HG03710.hp1 NA18522.hp1 NA18522.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0006 a0001c0009 others(1): Show a0001c0001 a0001c0006 a0001c0009 a0002c0003	a0001c0001t0001 a0001c0006t0001 a0001c0009t0001 others(1): Show a0001c0001t0001 a0001c0006t0001 a0001c0009t0001 a0002c0003t0001	a0001c0001t0001g0002 a0001c0001t0001g0041 a0001c0001t0001g0049 others(14): Show a0001c0001t0001g0002 a0001c0001t0001g0041 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0057 a0001c0001t0001g0076 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0093 a0001c0006t0001g0040 a0001c0006t0001g0042 a0001c0009t0001g0007 a0002c0003t0001g0064	17	106	0.1604	25	c.155 others(44): Show c.155-37913_155-37912insCAAAATATATATTATAAATATATTA	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	147784805	T T	TAATATAT others(18): Show TAATATATTATAAAATATATATTATA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02896.hp2 HG02622.hp1 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0047 a0001c0001t0001g0038 a0001c0001t0001g0047	2	106	0.0189	25	c.155 others(44): Show c.155-37840_155-37816dupTTATAAAATATATATTATAAATATA	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148043614	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	106	0.0094	25	c.186 others(44): Show c.1868-3278_1868-3277insTATATATATATATATATATATATAT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	19/22			chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148043652	T T	TATATATA others(18): Show TATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02056.hp2 HG02622.hp2 HG02056.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0083 a0001c0001t0001g0034 a0001c0001t0001g0083	2	106	0.0189	25	c.186 others(44): Show c.1868-3240_1868-3239insATATATATATATATATATATATATA	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	19/22			chr4	TogoVar
ARHGAP15_chr2_143124419_143773352	143673784	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	162	0.0062	25	c.113 others(46): Show c.1139-29635_1139-29634insTATATATATATATATATATATATA T	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13			chr2	TogoVar
ARHGAP18_chr6_129571132_129715177	129574644	A A	AAAATTGG others(18): Show AAAATTGGAACATTACACACCTACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0108 a0001c0001t0001g0108	1	238	0.0042	25	c.38 others(36): Show c.3868_*3869insGTGTAGGTGTGTAATGTTCCAATTT	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding		1487		chr6	TogoVar
ARHGAP19_chr10_97217179_97297637	97231059	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0031 a0001c0002t0002g0031	1	242	0.0041	25	c.128 others(44): Show c.1285-1210_1285-1186dupTTTTTTTTTTTTTTTTTTTTTTTTT	ARHGAP19	ENSG00000213390.11	transcript	ENST00000358531.9	protein_coding	9/11			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24608861	T T	TTACTATT others(18): Show TTACTATTATGTCAGTAAGAATGCAG	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG02523.hp2 NA18747.hp1 others(3): Show HG02129.hp2 HG02523.hp2 NA18747.hp1 NA18989.hp1 NA19011.hp2 NA19056.hp2	a0007 a0017 a0022 a0007 a0017 a0022	a0007c0007 a0017c0029 a0022c0028 a0007c0007 a0017c0029 a0022c0028	a0007c0007t0006 a0007c0007t0015 a0017c0029t0006 others(1): Show a0007c0007t0006 a0007c0007t0015 a0017c0029t0006 a0022c0028t0006	a0007c0007t0006g0291 a0007c0007t0006g0292 a0007c0007t0006g0293 others(3): Show a0007c0007t0006g0291 a0007c0007t0006g0292 a0007c0007t0006g0293 a0007c0007t0015g0288 a0017c0029t0006g0290 a0022c0028t0006g0289	6	352	0.0171	25	c.242 others(42): Show c.2423-983_2423-959dupCTGCATTCTTACTGACATAATAGTA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	9/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(18): Show ATATATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0017 a0002c0002t0001g0017	1	352	0.0028	25	c.495 others(42): Show c.495+1013_495+1014insAAATATATATATATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(18): Show ATATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG03130.hp2 HG03540.hp2 HG02572.hp2 HG03130.hp2 HG03540.hp2	a0001 a0004 a0005 a0001 a0004 a0005	a0001c0001 a0004c0004 a0005c0005 a0001c0001 a0004c0004 a0005c0005	a0001c0001t0001 a0004c0004t0001 a0005c0005t0001 a0001c0001t0001 a0004c0004t0001 a0005c0005t0001	a0001c0001t0001g0164 a0004c0004t0001g0069 a0005c0005t0001g0167 a0001c0001t0001g0164 a0004c0004t0001g0069 a0005c0005t0001g0167	3	352	0.0085	25	c.495 others(42): Show c.495+1013_495+1014insAAAAATATATATATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(18): Show ATATATATATATATATATATTTTTTT	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0019 a0002c0002t0001g0019	1	352	0.0028	25	c.495 others(42): Show c.495+1013_495+1014insAAAAAAATATATATATATATATATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP22_chr10_48441036_48610073	48577793	C C	CTTTTACT others(18): Show CTTTTACTGCTCTTTTTTGGTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02602.hp2 HG02738.hp2 others(8): Show HG02280.hp2 HG02602.hp2 HG02738.hp2 HG03654.hp1 HG04199.hp1 NA18950.hp2 NA18960.hp1 NA18981.hp2 NA18998.hp2 NA19067.hp1 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0004t0006	a0001c0001t0001g0048 a0001c0001t0001g0068 a0001c0001t0003g0202 others(8): Show a0001c0001t0001g0048 a0001c0001t0001g0068 a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0204 a0001c0001t0003g0212 a0001c0001t0005g0200 a0001c0001t0005g0201 a0001c0001t0005g0207 a0001c0001t0005g0209 a0001c0004t0006g0249	11	270	0.0407	25	c.234 others(42): Show c.234+5159_234+5160insAAAAAACCAAAAAAGAGCAGTAAAA	ARHGAP22	ENSG00000128805.15	transcript	ENST00000249601.9	protein_coding	2/9			chr10	TogoVar
ARHGAP23_chr17_38423464_38517385	38513074	T T	TTAATATA others(18): Show TTAATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19062.hp1 NA19062.hp1	a0002 a0002	a0002c0022 a0002c0022	a0002c0022t0010 a0002c0022t0010	a0002c0022t0010g0257 a0002c0022t0010g0257	1	309	0.0032	25	c.21 others(36): Show c.2102_*2103insTAATATATATATATATATATATATA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		690		chr17	TogoVar
ARHGAP23_chr17_38423464_38517385	38513099	T T	TATATATA others(18): Show TATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02886.hp2 NA19090.hp1 HG02886.hp2 NA19090.hp1	a0001 a0002 a0001 a0002	a0001c0016 a0002c0023 a0001c0016 a0002c0023	a0001c0016t0003 a0002c0023t0001 a0001c0016t0003 a0002c0023t0001	a0001c0016t0003g0045 a0002c0023t0001g0180 a0001c0016t0003g0045 a0002c0023t0001g0180	2	309	0.0065	25	c.21 others(36): Show c.2127_*2128insATATATATATATATATATATATATA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		715		chr17	TogoVar
ARHGAP24_chr4_85470150_86007666	85487726	A A	ATATTATA others(18): Show ATATTATATATTATATAATATATATT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	108	0.0093	25	c.-21 others(44): Show c.-21+12210_-21+12234dupTATATATTTATTATATATTATATAA	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr4	TogoVar

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