Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TPO_chr2_1408463_1548673	1532621	C C	CCCCACTG others(18): Show CCCCACTGTGTGCACCCCCCAAAAAT	intron_variant intron_variant	MODIFIER	HG00423.hp1 NA18612.hp2 HG00423.hp1 NA18612.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0004 a0003c0006t0004	a0003c0006t0004g0096 a0003c0006t0004g0097 a0003c0006t0004g0096 a0003c0006t0004g0097	2	130	0.0154	25	c.261 others(44): Show c.2619-7970_2619-7969insACTGTGTGCACCCCCCAAAAATCCC	TPO	ENSG00000115705.22	transcript	ENST00000329066.9	protein_coding	15/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
TPR_chr1_186306652_186380253	186327015	T T	TATATAAT others(18): Show TATATAATTATATATATAAATATATA	intron_variant intron_variant	MODIFIER	NA19090.hp2 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0252 a0001c0001t0001g0252	1	408	0.0025	25	c.588 others(42): Show c.5889+444_5889+445insTATATATTTATATATATAATTATAT	TPR	ENSG00000047410.14	transcript	ENST00000367478.9	protein_coding	40/50			chr1	TogoVar
TPR_chr1_186306652_186380253	186327087	A A	AATATATA others(18): Show AATATATATTTATATATAATATATAT	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG01517.hp1 HG01516.hp1 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	2	408	0.0049	25	c.588 others(42): Show c.5889+372_5889+373insATATATATTATATATAAATATATAT	TPR	ENSG00000047410.14	transcript	ENST00000367478.9	protein_coding	40/50			chr1	TogoVar
TPSD1_chr16_1251069_1264008	1260779	C C	CGTCCACA others(18): Show CGTCCACACAGAGCCCGGAGACGCAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01069.hp2 HG01069.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0003 a0003c0003t0003g0003	1	270	0.0037	25	c.24 others(36): Show c.2403_*2404insGTCCACACAGAGCCCGGAGACGCAT	TPSD1	ENSG00000095917.15	transcript	ENST00000211076.5	protein_coding		1772		chr16	TogoVar
TPSD1_chr16_1251069_1264008	1260804	T T	TGTCCACA others(18): Show TGTCCACACAGAGCCCGGAGACGCAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0032 a0006c0010t0032	a0006c0010t0032g0006 a0006c0010t0032g0006	1	270	0.0037	25	c.24 others(36): Show c.2428_*2429insGTCCACACAGAGCCCGGAGACGCAC	TPSD1	ENSG00000095917.15	transcript	ENST00000211076.5	protein_coding		1797		chr16	TogoVar
TPSD1_chr16_1251069_1264008	1260914	G G	GAGCCCGG others(18): Show GAGCCCGGAGACCCACGTCCACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04115.hp2 HG04115.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	270	0.0037	25	c.25 others(36): Show c.2538_*2539insAGCCCGGAGACCCACGTCCACACAC	TPSD1	ENSG00000095917.15	transcript	ENST00000211076.5	protein_coding		1907		chr16	TogoVar
TPTE2_chr13_19417877_19566532	19565207	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02129.hp1 HG02145.hp1 HG02148.hp2 others(8): Show HG02129.hp1 HG02145.hp1 HG02148.hp2 HG02523.hp1 HG02602.hp2 HG02630.hp1 HG03195.hp2 HG03225.hp1 HG03654.hp1 HG03710.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0132 a0001c0001t0001g0147 a0001c0001t0001g0151 others(8): Show a0001c0001t0001g0132 a0001c0001t0001g0147 a0001c0001t0001g0151 a0001c0001t0001g0155 a0001c0001t0001g0157 a0001c0001t0001g0203 a0001c0001t0001g0206 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0044	11	222	0.0496	25	c.-40 others(36): Show c.-4023_-4022insAAAAAAAAAAAAAAAAAAAAAAAAA	TPTE2	ENSG00000132958.19	transcript	ENST00000697147.1	protein_coding		3676		chr13	TogoVar
TRA2A_chr7_23499780_23536981	23505944	C C	CTGCCAAT others(18): Show CTGCCAATGAGACCAGAAAAGTATAT	intron_variant intron_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0075	1	399	0.0025	25	c.771 others(40): Show c.771-156_771-132dupATATACTTTTCTGGTCTCATTGGCA	TRA2A	ENSG00000164548.12	transcript	ENST00000297071.9	protein_coding	6/7			chr7	TogoVar
TRABD2A_chr2_84816666_84886084	84863239	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0202 a0001c0001t0001g0202	1	238	0.0042	25	c.669 others(42): Show c.669+6985_669+6986insAAAAAAAAAAAAAAAAAAAAAAAAA	TRABD2A	ENSG00000186854.11	transcript	ENST00000409520.7	protein_coding	2/6			chr2	TogoVar
TRABD2B_chr1_47755528_48002385	47966904	C C	CAAATAAA others(18): Show CAAATAAAATAAAATAAAATAAAATA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00621.hp1 HG00673.hp1 others(15): Show HG00323.hp1 HG00621.hp1 HG00673.hp1 HG02132.hp1 HG02257.hp1 HG02300.hp2 HG02698.hp2 HG02809.hp1 HG02886.hp1 HG02897.hp2 HG03486.hp2 HG03516.hp1 HG03942.hp2 NA18998.hp2 NA19004.hp1 NA19012.hp2 NA19066.hp1 NA19077.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(5): Show a0001c0001 a0001c0002 a0001c0004 a0001c0009 a0001c0015 a0002c0003 a0002c0006 a0002c0016	a0001c0001t0009 a0001c0001t0017 a0001c0002t0002 others(8): Show a0001c0001t0009 a0001c0001t0017 a0001c0002t0002 a0001c0002t0030 a0001c0004t0002 a0001c0009t0002 a0001c0009t0011 a0001c0015t0017 a0002c0003t0010 a0002c0006t0008 a0002c0016t0016	a0001c0001t0009g0122 a0001c0001t0009g0123 a0001c0001t0009g0125 others(15): Show a0001c0001t0009g0122 a0001c0001t0009g0123 a0001c0001t0009g0125 a0001c0001t0009g0127 a0001c0001t0009g0129 a0001c0001t0009g0130 a0001c0001t0009g0132 a0001c0001t0017g0121 a0001c0001t0017g0131 a0001c0002t0002g0024 a0001c0002t0030g0032 a0001c0004t0002g0015 a0001c0009t0002g0085 a0001c0009t0011g0081 a0001c0015t0017g0133 a0002c0003t0010g0087 a0002c0006t0008g0110 a0002c0016t0016g0115	18	244	0.0738	25	c.666 others(44): Show c.666+27105_666+27129dupTATTTTATTTTATTTTATTTTATTT	TRABD2B	ENSG00000269113.4	transcript	ENST00000606738.3	protein_coding	2/6			chr1	TogoVar
TRAF3_chr14_102772449_102916500	102820614	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0025 a0001c0001t0002g0025	1	296	0.0034	25	c.-15 others(44): Show c.-156-9719_-156-9718insATATATATATATATATATATATATT	TRAF3	ENSG00000131323.17	transcript	ENST00000392745.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr14	TogoVar
TRAF3_chr14_102772449_102916500	102820614	A A	ATATATAT others(18): Show ATATATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	NA18944.hp1 NA18944.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0047 a0001c0001t0045g0047	1	296	0.0034	25	c.-15 others(44): Show c.-156-9719_-156-9718insATATATATATATATATATATATTTT	TRAF3	ENSG00000131323.17	transcript	ENST00000392745.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr14	TogoVar
TRAF3_chr14_102772449_102916500	102820615	T T	TATATATA others(18): Show TATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18956.hp2 NA18956.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0116 a0001c0001t0048g0116	1	296	0.0034	25	c.-15 others(44): Show c.-156-9719_-156-9718insATATATATATATATATATATATATA	TRAF3	ENSG00000131323.17	transcript	ENST00000392745.8	protein_coding	1/11			chr14	TogoVar
TRAFD1_chr12_112120560_112158604	112124556	A A	AATTATAT others(18): Show AATTATATTATATTATATTATATTAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02129.hp2 HG02486.hp2 HG02572.hp2 others(5): Show HG02129.hp2 HG02486.hp2 HG02572.hp2 HG02922.hp1 HG03710.hp1 NA18981.hp2 NA19240.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0052 a0001c0001t0001g0059 a0001c0001t0001g0080 others(5): Show a0001c0001t0001g0052 a0001c0001t0001g0059 a0001c0001t0001g0080 a0001c0001t0001g0199 a0001c0001t0001g0203 a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0002t0001g0142	8	346	0.0231	25	c.-10 others(36): Show c.-1075_-1074insATTATATTATATTATATTATATTAT	TRAFD1	ENSG00000135148.12	transcript	ENST00000412615.7	protein_coding		1003		chr12	TogoVar
TRAK1_chr3_42086357_42230890	42092706	G G	GTGTTATG others(18): Show GTGTTATGTTATGTTATGTTATGATA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0003 a0003	a0003c0013 a0003c0013	a0003c0013t0005 a0003c0013t0005	a0003c0013t0005g0145 a0003c0013t0005g0145	1	288	0.0035	25	c.91+ others(40): Show c.91+1150_91+1151insATGTTATGTTATGTTATGATATGTT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42092711	G G	GTGTTGTG others(18): Show GTGTTGTGTTATGTTATGTTATGTTA	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02004.hp1 HG02630.hp1 others(1): Show HG01496.hp2 HG02004.hp1 HG02630.hp1 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0008 a0001c0001 a0001c0002 a0001c0008	a0001c0001t0002 a0001c0002t0002 a0001c0008t0005 a0001c0001t0002 a0001c0002t0002 a0001c0008t0005	a0001c0001t0002g0247 a0001c0001t0002g0248 a0001c0002t0002g0249 others(1): Show a0001c0001t0002g0247 a0001c0001t0002g0248 a0001c0002t0002g0249 a0001c0008t0005g0130	4	288	0.0139	25	c.91+ others(40): Show c.91+1155_91+1156insGTGTTATGTTATGTTATGTTATGTT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42092711	G G	GTGTTGTG others(18): Show GTGTTGTGTTGTGTTATGTTATGTTA	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03239.hp1 HG03688.hp2 others(6): Show HG02622.hp2 HG03239.hp1 HG03688.hp2 HG03710.hp1 NA18747.hp1 NA18991.hp1 NA18993.hp1 NA19030.hp1 NA19058.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0009	a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 others(3): Show a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0002t0004 a0001c0003t0003 a0001c0009t0001	a0001c0001t0002g0120 a0001c0001t0002g0121 a0001c0001t0002g0183 others(6): Show a0001c0001t0002g0120 a0001c0001t0002g0121 a0001c0001t0002g0183 a0001c0001t0004g0185 a0001c0002t0001g0118 a0001c0002t0004g0186 a0001c0003t0003g0117 a0001c0003t0003g0184 a0001c0009t0001g0119	9	288	0.0313	25	c.91+ others(40): Show c.91+1155_91+1156insGTGTTGTGTTATGTTATGTTATGTT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42092711	G G	GTGTTGTG others(18): Show GTGTTGTGTTGTGTTGTGTTATGTTA	intron_variant intron_variant	MODIFIER	NA18951.hp2 NA19066.hp1 NA18951.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0004 a0001c0004t0006 a0001c0001t0004 a0001c0004t0006	a0001c0001t0004g0279 a0001c0004t0006g0280 a0001c0001t0004g0279 a0001c0004t0006g0280	2	288	0.0069	25	c.91+ others(40): Show c.91+1155_91+1156insGTGTTGTGTTGTGTTATGTTATGTT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42093646	T T	TCTCCCCT others(18): Show TCTCCCCTCCCCTCCCCTCCCCTCCC	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03710.hp1 HG02622.hp2 HG03710.hp1	a0001 a0001	a0001c0002 a0001c0009 a0001c0002 a0001c0009	a0001c0002t0001 a0001c0009t0001 a0001c0002t0001 a0001c0009t0001	a0001c0002t0001g0118 a0001c0009t0001g0119 a0001c0002t0001g0118 a0001c0009t0001g0119	2	288	0.0069	25	c.91+ others(40): Show c.91+2093_91+2094insCCCCTCCCCTCCCCTCCCCTCCCCT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42093649	C C	CCCCTTCC others(18): Show CCCCTTCCCTTCCCTTCCCATCCCTT	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01884.hp2 HG01934.hp1 others(6): Show HG01109.hp2 HG01884.hp2 HG01934.hp1 HG02280.hp2 HG02630.hp1 HG02809.hp1 HG03139.hp2 NA18906.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0006 others(1): Show a0001c0001 a0001c0005 a0001c0006 a0001c0008	a0001c0001t0004 a0001c0001t0007 a0001c0005t0005 others(5): Show a0001c0001t0004 a0001c0001t0007 a0001c0005t0005 a0001c0006t0006 a0001c0006t0009 a0001c0008t0005 a0001c0008t0006 a0001c0008t0012	a0001c0001t0004g0133 a0001c0001t0007g0137 a0001c0005t0005g0132 others(6): Show a0001c0001t0004g0133 a0001c0001t0007g0137 a0001c0005t0005g0132 a0001c0006t0006g0129 a0001c0006t0009g0135 a0001c0008t0005g0130 a0001c0008t0006g0136 a0001c0008t0012g0142 a0001c0008t0012g0143	9	288	0.0313	25	c.91+ others(40): Show c.91+2107_91+2108insATCCCTTCCCTTCCCTTCCCTTCCC	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42093649	C C	CCCCTTCC others(18): Show CCCCTTCCCTTCCCTTCCCTTCCCTT	intron_variant intron_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0172 a0001c0001t0002g0172	1	288	0.0035	25	c.91+ others(40): Show c.91+2108_91+2109insTCCCTTCCCTTCCCTTCCCTTCCCT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42093664	T T	TCCCTTCC others(18): Show TCCCTTCCCTTCCCTTCCCTTCCCTC	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02738.hp2 HG02895.hp2 others(1): Show HG02615.hp1 HG02738.hp2 HG02895.hp2 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0009 a0001c0001 a0001c0005 a0001c0009	a0001c0001t0004 a0001c0005t0005 a0001c0009t0018 a0001c0001t0004 a0001c0005t0005 a0001c0009t0018	a0001c0001t0004g0214 a0001c0005t0005g0276 a0001c0009t0018g0228 others(1): Show a0001c0001t0004g0214 a0001c0005t0005g0276 a0001c0009t0018g0228 a0001c0009t0018g0229	4	288	0.0139	25	c.91+ others(40): Show c.91+2108_91+2109insTCCCTTCCCTTCCCTTCCCTCCCCT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42110131	T T	TATATATA others(18): Show TATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0010 a0001c0003t0010	a0001c0003t0010g0164 a0001c0003t0010g0164	1	288	0.0035	25	c.92- others(42): Show c.92-15288_92-15287insTATATATATATATATATATATATAA	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRANK1_chr3_36821819_36950054	36900851	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG02630.hp1 HG00544.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0002 a0001c0001t0013	a0001c0001t0002g0221 a0001c0001t0013g0228 a0001c0001t0002g0221 a0001c0001t0013g0228	2	330	0.0061	25	c.283 others(42): Show c.283-1617_283-1593dupTTTTTTTTTTTTTTTTTTTTTTTTT	TRANK1	ENSG00000168016.15	transcript	ENST00000645898.2	protein_coding	3/23			chr3	TogoVar
TRAP1_chr16_3653037_3722524	3653806	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0121 a0001c0001t0001g0121	1	412	0.0024	25	c.42 others(36): Show c.4298_*4322dupTTTTTTTTTTTTTTTTTTTTTTTTT	TRAP1	ENSG00000126602.11	transcript	ENST00000246957.10	protein_coding		4230		chr16	TogoVar
TRAPPC2_chrX_13707245_13739620	13722208	C C	CAGCAAAA others(18): Show CAGCAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18952.hp1 NA18952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0063 a0001c0001t0003g0063	1	326	0.0031	25	c.-19 others(42): Show c.-19-2227_-19-2226insTTTTTTTTTTTTTTTTTTTTTTGCT	TRAPPC2	ENSG00000196459.15	transcript	ENST00000380579.6	protein_coding	2/5			chrX	TogoVar
TRAPPC6A_chr19_45157933_45183237	45171299	C C	CACAAAAC others(18): Show CACAAAACAAAACAAAACAAAACAAA	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02717.hp2 HG03579.hp2 others(2): Show HG02559.hp1 HG02717.hp2 HG03579.hp2 HG03710.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0090 others(2): Show a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0003t0001g0080	5	434	0.0115	25	c.85- others(40): Show c.85-6130_85-6106dupTTTGTTTTGTTTTGTTTTGTTTTGT	TRAPPC6A	ENSG00000007255.10	transcript	ENST00000585934.1	protein_coding	1/5			chr19	TogoVar
TRAPPC8_chr18_31824197_31948128	31935548	T T	TGAAAAAA others(18): Show TGAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02922.hp1 HG02071.hp2 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0325 a0001c0001t0003g0326 a0001c0001t0003g0325 a0001c0001t0003g0326	2	350	0.0057	25	c.158 others(42): Show c.158-4026_158-4025insTTTTTTTTTTTTTTTTTTTTTTTTC	TRAPPC8	ENSG00000153339.15	transcript	ENST00000283351.10	protein_coding	1/28			chr18	TogoVar
TRAPPC9_chr8_139722725_140462744	139817045	A A	ACACACAC others(18): Show ACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp2 HG03139.hp1 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0029 a0001c0001t0001 a0001c0001t0029	a0001c0001t0001g0068 a0001c0001t0029g0077 a0001c0001t0001g0068 a0001c0001t0029g0077	2	98	0.0204	25	c.305 others(46): Show c.3055+68833_3055+68834insGTGTGTGTGTGTGTGTGTGTGTGT G	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	21/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140018324	A A	ATTTTTTC others(18): Show ATTTTTTCTTTTTTCTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0001 a0001c0014t0001	a0001c0014t0001g0074 a0001c0014t0001g0074	1	98	0.0102	25	c.269 others(44): Show c.2699+5612_2699+5613insAAAAAAAAAAAGAAAAAAGAAAAAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	18/22			chr8	TogoVar
TREML1_chr6_41144337_41159347	41155373	G G	GCTCTCTC others(18): Show GCTCTCTCTCTCTCTCTCTCTCTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18973.hp2 NA18973.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	292	0.0034	25	c.-10 others(36): Show c.-1086_-1085insGAGAGAGAGAGAGAGAGAGAGAGAG	TREML1	ENSG00000161911.12	transcript	ENST00000426005.7	protein_coding		1027		chr6	TogoVar
TRERF1_chr6_42219931_42456926	42387794	T T	TTTTTATT others(18): Show TTTTTATTTTATTTTATTTTATTTTA	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01891.hp2 HG02451.hp1 others(4): Show HG01261.hp1 HG01891.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp2 HG02630.hp1 HG03130.hp1	a0001 a0005 a0006 a0001 a0005 a0006	a0001c0001 a0001c0002 a0001c0011 others(2): Show a0001c0001 a0001c0002 a0001c0011 a0005c0015 a0006c0033	a0001c0001t0001 a0001c0001t0024 a0001c0002t0020 others(4): Show a0001c0001t0001 a0001c0001t0024 a0001c0002t0020 a0001c0011t0006 a0001c0011t0033 a0005c0015t0051 a0006c0033t0011	a0001c0001t0001g0021 a0001c0001t0024g0125 a0001c0002t0020g0175 others(4): Show a0001c0001t0001g0021 a0001c0001t0024g0125 a0001c0002t0020g0175 a0001c0011t0006g0067 a0001c0011t0033g0023 a0005c0015t0051g0037 a0006c0033t0011g0129	7	180	0.0389	25	c.-45 others(46): Show c.-453-24740_-453-24716dupTAAAATAAAATAAAATAAAATAAA A	TRERF1	ENSG00000124496.13	transcript	ENST00000695948.1	protein_coding	2/17			chr6	TogoVar
TRIM11_chr1_228388676_228411835	228389729	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18995.hp1 NA18995.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0092 a0001c0002t0001g0092	1	386	0.0026	25	c.49 others(36): Show c.4975_*4976insTTTTTTTTTTTTTTTTTTTTTTTTT	TRIM11	ENSG00000154370.16	transcript	ENST00000284551.11	protein_coding		3946		chr1	TogoVar
TRIM14_chr9_98079353_98124222	98110848	A A	AAAAATAA others(18): Show AAAAATAAAATAAAATAAAATAAAAT	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01243.hp1 HG01884.hp1 others(7): Show HG01081.hp1 HG01243.hp1 HG01884.hp1 HG01952.hp2 HG02486.hp1 HG02897.hp1 HG03098.hp1 HG03130.hp2 HG03486.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006	a0001c0001t0002 a0001c0002t0007 a0001c0005t0002 others(1): Show a0001c0001t0002 a0001c0002t0007 a0001c0005t0002 a0001c0006t0011	a0001c0001t0002g0008 a0001c0001t0002g0033 a0001c0001t0002g0034 others(6): Show a0001c0001t0002g0008 a0001c0001t0002g0033 a0001c0001t0002g0034 a0001c0001t0002g0133 a0001c0001t0002g0134 a0001c0001t0002g0140 a0001c0002t0007g0220 a0001c0005t0002g0142 a0001c0006t0011g0043	10	352	0.0284	25	c.208 others(40): Show c.208-889_208-865dupATTTTATTTTATTTTATTTTATTTT	TRIM14	ENSG00000106785.15	transcript	ENST00000341469.7	protein_coding	1/5			chr9	TogoVar
TRIM21_chr11_4379897_4398702	4392567	A A	AAAAACAA others(18): Show AAAAACAAAACAAAACAAAACAAAAC	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00639.hp2 HG00642.hp1 others(19): Show HG00423.hp2 HG00639.hp2 HG00642.hp1 HG01243.hp1 HG01255.hp1 HG02015.hp1 HG02258.hp2 HG02451.hp2 HG02630.hp1 HG02683.hp1 HG02886.hp1 HG02896.hp2 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03516.hp1 HG03669.hp2 NA18966.hp2 NA19005.hp2 NA19067.hp2 NA19240.hp1 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0005 a0001c0001 a0001c0002 a0002c0005	a0001c0001t0016 a0001c0002t0001 a0001c0002t0003 others(5): Show a0001c0001t0016 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0009 a0001c0002t0012 a0002c0005t0003	a0001c0001t0016g0140 a0001c0002t0001g0023 a0001c0002t0003g0013 others(8): Show a0001c0001t0016g0140 a0001c0002t0001g0023 a0001c0002t0003g0013 a0001c0002t0003g0021 a0001c0002t0003g0127 a0001c0002t0003g0132 a0001c0002t0004g0050 a0001c0002t0005g0128 a0001c0002t0009g0129 a0001c0002t0012g0130 a0002c0005t0003g0131	22	478	0.0460	25	c.-50 others(42): Show c.-50+1065_-50+1066insGTTTTGTTTTGTTTTGTTTTGTTTT	TRIM21	ENSG00000132109.10	transcript	ENST00000254436.8	protein_coding	1/6			chr11	TogoVar
TRIM23_chr5_65584690_65629333	65591645	T T	TATATATA others(18): Show TATATATATATATATATATATATATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0190 a0001c0001t0048g0190	1	372	0.0027	25	c.12 others(34): Show c.123_*124insTATATATATATATATATATATATAT	TRIM23	ENSG00000113595.15	transcript	ENST00000231524.14	protein_coding	11/11	123		chr5	TogoVar
TRIM24_chr7_138455259_138594996	138463989	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0257 a0001c0001t0005g0257	1	312	0.0032	25	c.364 others(42): Show c.364+3100_364+3101insTTTTTTTTTTTTTTTTTTTTTTTTT	TRIM24	ENSG00000122779.18	transcript	ENST00000343526.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr7	TogoVar
TRIM24_chr7_138455259_138594996	138508700	C C	CGCGCGCG others(18): Show CGCGCGCGCGCGCTGTGTGCGTGTGT	intron_variant intron_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0249 a0001c0001t0001g0249	1	312	0.0032	25	c.483 others(42): Show c.483+4293_483+4294insCGCGCGCGCGCTGTGTGCGTGTGTG	TRIM24	ENSG00000122779.18	transcript	ENST00000343526.9	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr7	TogoVar
TRIM24_chr7_138455259_138594996	138517360	G G	GTGTTTTG others(18): Show GTGTTTTGTTTTGTTTTGTTTTGTTT	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02622.hp1 HG02055.hp2 HG02622.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0056 a0001c0004t0057 a0001c0004t0056 a0001c0004t0057	a0001c0004t0056g0008 a0001c0004t0057g0185 a0001c0004t0056g0008 a0001c0004t0057g0185	2	312	0.0064	25	c.632 others(42): Show c.632-1827_632-1803dupGTTTTGTTTTGTTTTGTTTTGTTTT	TRIM24	ENSG00000122779.18	transcript	ENST00000343526.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr7	TogoVar
TRIM24_chr7_138455259_138594996	138568379	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18979.hp1 NA19002.hp1 NA18979.hp1 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0059 a0001c0001t0001g0021 a0001c0001t0001g0059	2	312	0.0064	25	c.170 others(42): Show c.1704+731_1704+755dupTTTTTTTTTTTTTTTTTTTTTTTTT	TRIM24	ENSG00000122779.18	transcript	ENST00000343526.9	protein_coding	10/18		INFO_REALIGN_3_PRIME	chr7	TogoVar
TRIM31_chr6_30097897_30118090	30099115	G G	GAAAGAAA others(18): Show GAAAGAAAGAAAGAAAGAAAGAAAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp2 HG02602.hp1 HG03540.hp2 others(1): Show HG01255.hp2 HG02602.hp1 HG03540.hp2 NA21309.hp2	a0001 a0005 a0014 a0001 a0005 a0014	a0001c0017 a0005c0026 a0014c0019 a0001c0017 a0005c0026 a0014c0019	a0001c0017t0001 a0005c0026t0001 a0014c0019t0014 a0001c0017t0001 a0005c0026t0001 a0014c0019t0014	a0001c0017t0001g0159 a0001c0017t0001g0160 a0005c0026t0001g0064 others(1): Show a0001c0017t0001g0159 a0001c0017t0001g0160 a0005c0026t0001g0064 a0014c0019t0014g0209	4	445	0.0090	25	c.44 others(36): Show c.4420_*4421insTCTTTCTTTCTTTCTTTCTTTCTTT	TRIM31	ENSG00000204616.11	transcript	ENST00000376734.4	protein_coding		3781		chr6	TogoVar
TRIM37_chr17_58993202_59111880	58998628	C C	CACTACAG others(18): Show CACTACAGTCGTATAGTAAGAGGCAG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0029 a0001c0001t0013g0029	1	342	0.0029	25	c.72 others(34): Show c.724_*748dupCTGCCTCTTACTATACGACTGTAGT	TRIM37	ENSG00000108395.14	transcript	ENST00000262294.12	protein_coding	24/24	748		chr17	TogoVar
TRIM37_chr17_58993202_59111880	59042445	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01981.hp2 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0010 a0001c0001t0003g0010	1	342	0.0029	25	c.166 others(42): Show c.1668-548_1668-547insATATATATATATATATATATATATA	TRIM37	ENSG00000108395.14	transcript	ENST00000262294.12	protein_coding	16/23			chr17	TogoVar
TRIM37_chr17_58993202_59111880	59042447	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0021 a0001c0001t0003g0021	1	342	0.0029	25	c.166 others(42): Show c.1668-550_1668-549insATATATATATATATATATATATATA	TRIM37	ENSG00000108395.14	transcript	ENST00000262294.12	protein_coding	16/23			chr17	TogoVar
TRIM37_chr17_58993202_59111880	59056716	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19062.hp1 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0026 a0001c0001t0003g0026	1	342	0.0029	25	c.119 others(42): Show c.1199+134_1199+158dupTTTTTTTTTTTTTTTTTTTTTTTTT	TRIM37	ENSG00000108395.14	transcript	ENST00000262294.12	protein_coding	13/23			chr17	TogoVar
TRIM51_chr11_55878297_55896810	55884182	T T	TACTATAT others(18): Show TACTATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19001.hp1 NA19001.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0100 a0002c0002t0001g0100	1	436	0.0023	25	c.-5+ others(38): Show c.-5+800_-5+801insTATATATATATATATATATATACAC	TRIM51	ENSG00000124900.12	transcript	ENST00000449290.6	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
TRIM66_chr11_8607040_8687665	8628636	A A	AAAAAAAA others(18): Show AAAAAAAAAAAAAAAAAAAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG02293.hp1 HG01192.hp2 HG02293.hp1	a0001 a0004 a0001 a0004	a0001c0023 a0004c0004 a0001c0023 a0004c0004	a0001c0023t0004 a0004c0004t0004 a0001c0023t0004 a0004c0004t0004	a0001c0023t0004g0319 a0004c0004t0004g0302 a0001c0023t0004g0319 a0004c0004t0004g0302	2	390	0.0051	25	c.231 others(44): Show c.2311-3409_2311-3408insCTCTCTCTTTTTTTTTTTTTTTTTT	TRIM66	ENSG00000166436.18	transcript	ENST00000646038.2	protein_coding	15/24			chr11	TogoVar
TRIM71_chr3_32812997_32902824	32833184	T T	TAAAAAAA others(18): Show TAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02148.hp2 HG02015.hp1 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0128 a0001c0001t0006g0150 a0001c0001t0001g0128 a0001c0001t0006g0150	2	328	0.0061	25	c.852 others(44): Show c.852+14256_852+14280dupAAAAAAAAAAAAAAAAAAAAAAAAA	TRIM71	ENSG00000206557.6	transcript	ENST00000383763.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRIM9_chr14_50970266_51100105	51052050	A A	AAGAGAAG others(18): Show AAGAGAAGAGAAGAGGAGAAGAGAAG	intron_variant intron_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0286 a0001c0001t0003g0286	1	342	0.0029	25	c.823 others(44): Show c.823-26715_823-26691dupCTTCTCTTCTCCTCTTCTCTTCTCT	TRIM9	ENSG00000100505.14	transcript	ENST00000684578.1	protein_coding	1/12			chr14	TogoVar
TRIML1_chr4_188134441_188152743	188151143	A A	AGGGGAGT others(18): Show AGGGGAGTGAGAGAGGGGTTGAGAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0016	1	228	0.0044	25	c.37 others(36): Show c.3771_*3772insGGGGAGTGAGAGAGGGGTTGAGAAG	TRIML1	ENSG00000184108.8	transcript	ENST00000332517.4	protein_coding		3401		chr4	TogoVar

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Search Results (Total: 8644 hits)