Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
XKR4_chr8_55097028_55547054	55144805	C C	CTATTTTA others(18): Show CTATTTTATTTTATTTTATTTTATTT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01891.hp2 HG02622.hp1 others(2): Show HG01361.hp1 HG01891.hp2 HG02622.hp1 HG02922.hp2 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0029 a0001c0001t0032 others(2): Show a0001c0001t0021 a0001c0001t0029 a0001c0001t0032 a0001c0001t0153 a0001c0001t0156	a0001c0001t0021g0123 a0001c0001t0029g0148 a0001c0001t0032g0134 others(2): Show a0001c0001t0021g0123 a0001c0001t0029g0148 a0001c0001t0032g0134 a0001c0001t0153g0101 a0001c0001t0156g0157	5	182	0.0275	25	c.806 others(44): Show c.806+41521_806+41545dupTTATTTTATTTTATTTTATTTTATT	XKR4	ENSG00000206579.10	transcript	ENST00000327381.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr8	TogoVar
XKR9_chr8_70664339_70740942	70669642	T T	TGTGTGTG others(18): Show TGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0281 a0001c0002t0002g0281	1	322	0.0031	25	c.-36 others(42): Show c.-361+104_-361+105insGTGTGTGTGTGTGTGTGTGTGTGTG	XKR9	ENSG00000221947.8	transcript	ENST00000408926.8	protein_coding	1/4			chr8	TogoVar
XPNPEP3_chr22_40852148_40937815	40898225	A A	ATTTTTTT others(18): Show ATTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0071	1	248	0.0040	25	c.793 others(42): Show c.793-9347_793-9323dupTTTTTTTTTTTTTTTTTTTTTTTTT	XPNPEP3	ENSG00000196236.13	transcript	ENST00000357137.9	protein_coding	4/9		INFO_REALIGN_3_PRIME	chr22	TogoVar
XPO1_chr2_61472849_61543356	61482033	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0094 a0001c0001t0021g0094	1	318	0.0031	25	c.297 others(42): Show c.2972+346_2972+347insAAAAAAAAAAAAAAAAAAAAAAAAA	XPO1	ENSG00000082898.19	transcript	ENST00000401558.7	protein_coding	23/24			chr2	TogoVar
XPO4_chr13_20772329_20907746	20882109	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0277 a0001c0001t0028g0277	1	292	0.0034	25	c.70- others(42): Show c.70-13409_70-13408insTTTTTTTTTTTTTTTTTTTTTTTTT	XPO4	ENSG00000132953.18	transcript	ENST00000255305.11	protein_coding	1/22			chr13	TogoVar
XPO6_chr16_28092976_28216965	28186374	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG03471.hp2 HG02896.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0288 a0001c0001t0006g0289 a0001c0001t0006g0288 a0001c0001t0006g0289	2	308	0.0065	25	c.4-5 others(38): Show c.4-5344_4-5343insAAAAAAAAAAAAAAAAAAAAAAAAA	XPO6	ENSG00000169180.12	transcript	ENST00000304658.10	protein_coding	1/23			chr16	TogoVar
XPR1_chr1_180627022_180895279	180744650	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03540.hp1 HG02486.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0232 a0001c0001t0009g0235 a0001c0001t0009g0232 a0001c0001t0009g0235	2	330	0.0061	25	c.122 others(44): Show c.122-43100_122-43099insTTTTTTTTTTTTTTTTTTTTTTTTT	XPR1	ENSG00000143324.14	transcript	ENST00000367590.9	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
XPR1_chr1_180627022_180895279	180859067	G G	GTAAATTA others(18): Show GTAAATTATTACCAGAAGAGAAAGGT	intron_variant intron_variant	MODIFIER	NA19078.hp1 NA19078.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0076 a0001c0001t0003g0076	1	330	0.0030	25	c.150 others(44): Show c.1502-4640_1502-4639insAAATTATTACCAGAAGAGAAAGGTT	XPR1	ENSG00000143324.14	transcript	ENST00000367590.9	protein_coding	11/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
XRCC2_chr7_152639776_152681141	152646301	G G	GTGTGTGT others(18): Show GTGTGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0248 a0001c0001t0060g0248	1	394	0.0025	25	c.23 others(36): Show c.2340_*2341insACACACACACACACACACACACACA	XRCC2	ENSG00000196584.4	transcript	ENST00000359321.2	protein_coding	3/3	2340		chr7	TogoVar
XRCC2_chr7_152639776_152681141	152669319	A A	ACTAACAA others(18): Show ACTAACAAGGTGTCCCAAATGTCTTC	intron_variant intron_variant	MODIFIER	NA18972.hp2 NA18972.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0213 a0001c0001t0003g0213	1	394	0.0025	25	c.39+ others(40): Show c.39+6697_39+6721dupGAAGACATTTGGGACACCTTGTTAG	XRCC2	ENSG00000196584.4	transcript	ENST00000359321.2	protein_coding	1/2			chr7	TogoVar
XRCC4_chr5_83072547_83358760	83094301	C C	CCCTCCCC others(18): Show CCCTCCCCTTCCCTCCCCTCCCCTCT	intron_variant intron_variant	MODIFIER	HG02055.hp1 NA19240.hp2 HG02055.hp1 NA19240.hp2	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0001 a0004c0007t0001	a0004c0007t0001g0069 a0004c0007t0001g0248 a0004c0007t0001g0069 a0004c0007t0001g0248	2	262	0.0076	25	c.-10 others(44): Show c.-10-10593_-10-10569dupCCTCCCCTCTCCTCCCCTTCCCTCC	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC4_chr5_83072547_83358760	83309296	A A	AAAAAAAA others(18): Show AAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18939.hp1 NA18947.hp2 NA18939.hp1 NA18947.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0120 a0001c0001t0002g0126 a0001c0001t0002g0120 a0001c0001t0002g0126	2	262	0.0076	25	c.894 others(44): Show c.894-43834_894-43833insAAAAAAATATATATATATATATATA	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC4_chr5_83072547_83358760	83309296	A A	AAAAATAT others(18): Show AAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02523.hp2 NA18966.hp1 HG02523.hp2 NA18966.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0133 a0001c0001t0002g0259 a0001c0001t0002g0133 a0001c0001t0002g0259	2	262	0.0076	25	c.894 others(44): Show c.894-43834_894-43833insAAATATATATATATATATATATATA	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC5_chr2_216104348_216211293	216195341	C C	CTTGTTTT others(18): Show CTTGTTTTTCTTTTCTTTTCTTTTCT	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0122 a0001c0001t0001g0122	1	352	0.0028	25	c.210 others(42): Show c.2109+357_2109+358insGTTTTTCTTTTCTTTTCTTTTCTTT	XRCC5	ENSG00000079246.16	transcript	ENST00000392132.7	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
XRCC5_chr2_216104348_216211293	216195345	T T	TTTTTCTT others(18): Show TTTTTCTTTTCTTTTCTTTTCTTTTC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00438.hp2 others(29): Show HG00140.hp1 HG00280.hp1 HG00438.hp2 HG00609.hp2 HG00639.hp2 HG01071.hp1 HG01169.hp1 HG01243.hp2 HG01261.hp1 HG01496.hp1 HG01928.hp2 HG01952.hp1 HG01981.hp1 HG02132.hp2 HG02155.hp2 HG02273.hp1 HG02273.hp2 HG03453.hp2 HG03688.hp2 NA18945.hp2 NA18954.hp2 NA18960.hp1 NA18964.hp1 NA18969.hp1 NA19002.hp1 NA19030.hp2 NA19065.hp2 NA19072.hp1 NA19079.hp1 NA19087.hp1 NA19087.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0001 a0001c0001t0003 a0001c0001t0005	a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0070 others(29): Show a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0085 a0001c0001t0001g0089 a0001c0001t0001g0097 a0001c0001t0001g0108 a0001c0001t0001g0113 a0001c0001t0001g0127 a0001c0001t0001g0136 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0171 a0001c0001t0001g0176 a0001c0001t0001g0180 a0001c0001t0001g0196 a0001c0001t0001g0198 a0001c0001t0001g0267 a0001c0001t0001g0280 a0001c0001t0001g0283 a0001c0001t0001g0285 a0001c0001t0003g0026 a0001c0001t0003g0230 a0001c0001t0005g0286 a0001c0001t0005g0335	32	352	0.0909	25	c.210 others(42): Show c.2109+381_2109+405dupTTTCTTTTCTTTTCTTTTCTTTTCT	XRCC5	ENSG00000079246.16	transcript	ENST00000392132.7	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
XRCC6_chr22_41616295_41669041	41648019	T T	TCCCTCCC others(18): Show TCCCTCCCCTCCCCTCCCCTCCCCTC	intron_variant intron_variant	MODIFIER	NA19087.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0166 a0001c0001t0001g0166	1	324	0.0031	25	c.960 others(40): Show c.960+954_960+978dupCCTCCCCTCCCCTCCCCTCCCCTCC	XRCC6	ENSG00000196419.13	transcript	ENST00000360079.8	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
XRCC6_chr22_41616295_41669041	41649139	A A	AAAAAAAT others(18): Show AAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19088.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	1	324	0.0031	25	c.961 others(42): Show c.961-1583_961-1582insAAAAATATATATATATATATATATA	XRCC6	ENSG00000196419.13	transcript	ENST00000360079.8	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
XRN2_chr20_21298331_21394825	21377264	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG02572.hp2 others(9): Show HG00140.hp1 HG00280.hp1 HG02572.hp2 HG03704.hp1 HG03834.hp2 NA18963.hp2 NA18983.hp2 NA19005.hp1 NA19011.hp2 NA19030.hp1 NA19240.hp2 NA20300.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0002 a0003c0005t0002 a0001c0001t0002 a0003c0005t0002	a0001c0001t0002g0143 a0001c0001t0002g0144 a0001c0001t0002g0148 others(9): Show a0001c0001t0002g0143 a0001c0001t0002g0144 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0150 a0001c0001t0002g0151 a0001c0001t0002g0157 a0001c0001t0002g0164 a0001c0001t0002g0169 a0001c0001t0002g0171 a0001c0001t0002g0172 a0003c0005t0002g0139	12	278	0.0432	25	c.258 others(44): Show c.2585-4716_2585-4715insTTTTTTTTTTTTTTTTTTTTTTTTT	XRN2	ENSG00000088930.8	transcript	ENST00000377191.5	protein_coding	27/29		INFO_REALIGN_3_PRIME	chr20	TogoVar
XYLB_chr3_38341785_38419985	38351171	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG02273.hp1 NA19030.hp2 others(1): Show HG01975.hp1 HG02273.hp1 NA19030.hp2 NA19068.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0002 a0002c0002t0004 a0001c0001t0004 a0002c0002t0002 a0002c0002t0004	a0001c0001t0004g0001 a0002c0002t0002g0079 a0002c0002t0004g0021 a0001c0001t0004g0001 a0002c0002t0002g0079 a0002c0002t0004g0021	4	358	0.0112	25	c.140 others(42): Show c.140+2543_140+2567dupAAAAAAAAAAAAAAAAAAAAAAAAA	XYLB	ENSG00000093217.11	transcript	ENST00000207870.8	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr3	TogoVar
XYLT2_chr17_50341126_50366185	50362955	T T	TTTATTTA others(18): Show TTTATTTATTTTATTTATTTATTTTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	360	0.0028	25	c.26 others(36): Show c.2664_*2665insTTATTTATTTTATTTATTTATTTTA	XYLT2	ENSG00000015532.10	transcript	ENST00000017003.7	protein_coding		1771		chr17	TogoVar
YAF2_chr12_42152104_42243248	42175740	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18977.hp1 NA18982.hp1 NA18993.hp2 others(1): Show NA18977.hp1 NA18982.hp1 NA18993.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0017 a0001c0001t0001g0031 others(1): Show a0001c0001t0001g0006 a0001c0001t0001g0017 a0001c0001t0001g0031 a0001c0001t0001g0052	4	374	0.0107	25	c.153 others(44): Show c.153-14000_153-13976dupTTTTTTTTTTTTTTTTTTTTTTTTT	YAF2	ENSG00000015153.15	transcript	ENST00000534854.7	protein_coding	2/3			chr12	TogoVar
YBEY_chr21_46281342_46302751	46298434	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp1 HG02886.hp2 HG02280.hp1 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0015 a0001c0001t0001g0016	2	404	0.0050	25	c.80 others(34): Show c.800_*801insTTTTTTTTTTTTTTTTTTTTTTTTT	YBEY	ENSG00000182362.14	transcript	ENST00000397701.9	protein_coding		684		chr21	TogoVar
YEATS2_chr3_183692797_183817624	183712184	G G	GTTATTTT others(18): Show GTTATTTTATTTTATTTTATTTTATT	intron_variant intron_variant	MODIFIER	NA18950.hp1 NA18990.hp1 NA19077.hp1 NA18950.hp1 NA18990.hp1 NA19077.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0003 a0003c0004t0003	a0003c0004t0003g0151 a0003c0004t0003g0158 a0003c0004t0003g0159 a0003c0004t0003g0151 a0003c0004t0003g0158 a0003c0004t0003g0159	3	310	0.0097	25	c.-19 others(42): Show c.-19-2958_-19-2957insATTTTATTTTATTTTATTTTATTTT	YEATS2	ENSG00000163872.16	transcript	ENST00000305135.10	protein_coding	1/30		INFO_REALIGN_3_PRIME	chr3	TogoVar
YEATS2_chr3_183692797_183817624	183712194	T T	TTTATGTT others(18): Show TTTATGTTATGTTATGTTATGTTATG	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02896.hp2 HG01261.hp2 HG02896.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0002 a0001c0007t0002	a0001c0007t0002g0177 a0001c0007t0002g0178 a0001c0007t0002g0177 a0001c0007t0002g0178	2	310	0.0065	25	c.-19 others(42): Show c.-19-2946_-19-2945insGTTATGTTATGTTATGTTATGTTAT	YEATS2	ENSG00000163872.16	transcript	ENST00000305135.10	protein_coding	1/30		INFO_REALIGN_3_PRIME	chr3	TogoVar
YIPF5_chr5_144153162_144175659	144170735	C C	CGAGGCAG others(18): Show CGAGGCAGGATGATACAGGGAGCCTA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20752.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0006 a0001c0001t0004g0006	1	440	0.0023	25	c.-21 others(34): Show c.-212_-211insTAGGCTCCCTGTATCATCCTGCCTC	YIPF5	ENSG00000145817.17	transcript	ENST00000274496.10	protein_coding		77		chr5	TogoVar
YJU2B_chr19_13742895_13768289	13767038	T T	TATATATA others(18): Show TATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18960.hp1 NA18995.hp1 NA18960.hp1 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0003 a0001c0001t0001g0006	2	432	0.0046	25	c.39 others(36): Show c.3970_*3971insATATATATATATATATATATATATA	YJU2B	ENSG00000104957.14	transcript	ENST00000221554.13	protein_coding		3750		chr19	TogoVar
YJU2B_chr19_13742895_13768289	13767861	C C	CTTTTTTT others(18): Show CTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG02895.hp2 HG02897.hp1 others(7): Show HG02615.hp2 HG02895.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp1 HG03195.hp1 HG03486.hp2 HG03540.hp1 NA19058.hp2 NA20752.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0001 a0003c0005t0001 a0001c0001t0001 a0003c0005t0001	a0001c0001t0001g0011 a0001c0001t0001g0018 a0001c0001t0001g0061 others(7): Show a0001c0001t0001g0011 a0001c0001t0001g0018 a0001c0001t0001g0061 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0142 a0001c0001t0001g0197 a0001c0001t0001g0225 a0001c0001t0001g0239 a0003c0005t0001g0302	10	432	0.0232	25	c.47 others(36): Show c.4793_*4794insTTTTTTTTTTTTTTTTTTTTTTTTT	YJU2B	ENSG00000104957.14	transcript	ENST00000221554.13	protein_coding		4573		chr19	TogoVar
YOD1_chr1_207038849_207056208	207042549	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0007 a0001c0001t0007g0007	1	402	0.0025	25	c.64 others(36): Show c.6446_*6470dupTTTTTTTTTTTTTTTTTTTTTTTTT	YOD1	ENSG00000180667.11	transcript	ENST00000315927.9	protein_coding		1299		chr1	TogoVar
YPEL2_chr17_59326655_59406729	59379856	T T	TTTTTGTT others(18): Show TTTTTGTTTTGTTTTGTTTTGTTTTG	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp2 HG01169.hp1 others(40): Show HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01952.hp1 HG02257.hp2 HG02451.hp2 HG02559.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG03098.hp2 HG03195.hp2 HG03225.hp2 HG03516.hp2 HG03579.hp2 HG03927.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18945.hp2 NA18951.hp2 NA18952.hp1 NA18957.hp2 NA18959.hp1 NA18995.hp2 NA18997.hp2 NA19009.hp1 NA19009.hp2 NA19043.hp1 NA19064.hp1 NA19065.hp1 NA19077.hp1 NA19079.hp1 NA19079.hp2 NA19086.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 others(13): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0018 a0001c0001t0022 a0001c0001t0062 a0001c0002t0020 a0001c0002t0028 a0001c0002t0030	a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0006 others(40): Show a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0006 a0001c0001t0002g0247 a0001c0001t0002g0285 a0001c0001t0002g0314 a0001c0001t0005g0100 a0001c0001t0008g0302 a0001c0001t0008g0306 a0001c0001t0008g0310 a0001c0001t0008g0311 a0001c0001t0008g0323 a0001c0001t0009g0246 a0001c0001t0009g0269 a0001c0001t0009g0280 a0001c0001t0010g0054 a0001c0001t0010g0055 a0001c0001t0010g0058 a0001c0001t0010g0059 a0001c0001t0010g0071 a0001c0001t0011g0320 a0001c0001t0012g0234 a0001c0001t0013g0043 a0001c0001t0013g0051 a0001c0001t0013g0057 a0001c0001t0013g0152 a0001c0001t0013g0299 a0001c0001t0014g0025 a0001c0001t0014g0195 a0001c0001t0016g0307 a0001c0001t0016g0335 a0001c0001t0016g0336 a0001c0001t0018g0012 a0001c0001t0018g0021 a0001c0001t0018g0262 a0001c0001t0022g0028 a0001c0001t0062g0079 a0001c0002t0020g0044 a0001c0002t0020g0063 a0001c0002t0020g0064 a0001c0002t0028g0046 a0001c0002t0028g0062 a0001c0002t0030g0056	43	350	0.1229	25	c.118 others(42): Show c.118-8470_118-8446dupTTTTGTTTTGTTTTGTTTTGTTTTG	YPEL2	ENSG00000175155.11	transcript	ENST00000312655.9	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr17	TogoVar
YPEL2_chr17_59326655_59406729	59405456	A A	ATATATAT others(18): Show ATATATATATATATATATATATATTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00735.hp1 HG00099.hp1 HG00735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0202 a0001c0001t0001g0209 a0001c0001t0001g0202 a0001c0001t0001g0209	2	350	0.0057	25	c.82 others(36): Show c.8266_*8267insTATATATATATATATATATATATTT	YPEL2	ENSG00000175155.11	transcript	ENST00000312655.9	protein_coding		3728		chr17	TogoVar
YPEL2_chr17_59326655_59406729	59405456	A A	ATATATAT others(18): Show ATATATATATATATATATATATTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG01258.hp2 HG00280.hp1 HG01258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0021 a0001c0001t0001 a0001c0001t0021	a0001c0001t0001g0167 a0001c0001t0021g0003 a0001c0001t0001g0167 a0001c0001t0021g0003	2	350	0.0057	25	c.82 others(36): Show c.8266_*8267insTATATATATATATATATATATTTTT	YPEL2	ENSG00000175155.11	transcript	ENST00000312655.9	protein_coding		3728		chr17	TogoVar
YPEL2_chr17_59326655_59406729	59405457	T T	TATATATA others(18): Show TATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0127 a0001c0001t0004g0127	1	350	0.0029	25	c.82 others(36): Show c.8267_*8268insATATATATATATATATATATATATA	YPEL2	ENSG00000175155.11	transcript	ENST00000312655.9	protein_coding		3729		chr17	TogoVar
YTHDF2_chr1_28731940_28774775	28753358	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0048 a0001c0001t0001g0048	1	292	0.0034	25	c.171 others(44): Show c.1716+9388_1716+9412dupAAAAAAAAAAAAAAAAAAAAAAAAA	YTHDF2	ENSG00000198492.16	transcript	ENST00000373812.8	protein_coding	4/4		INFO_REALIGN_3_PRIME	chr1	TogoVar
YTHDF3_chr8_63163621_63217786	63188701	A A	ATATATAT others(18): Show ATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0110 a0001c0001t0003g0110	1	374	0.0027	25	c.173 others(42): Show c.1734+957_1734+958insATATATATATATATATATATATATT	YTHDF3	ENSG00000185728.17	transcript	ENST00000539294.6	protein_coding	4/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
YWHAE_chr17_1339275_1405222	1394460	A A	AAAAAAAA others(18): Show AAAAAAAAAAAAAAAAAAAAAAAACC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0147 a0001c0001t0001g0147	1	373	0.0027	25	c.64+ others(40): Show c.64+5586_64+5587insGGTTTTTTTTTTTTTTTTTTTTTTT	YWHAE	ENSG00000108953.17	transcript	ENST00000264335.13	protein_coding	1/5			chr17	TogoVar
YWHAG_chr7_76321799_76363991	76331286	G G	GGGAGAGG others(18): Show GGGAGAGGAGAGGAGAGGAGAGGAGA	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02257.hp1 HG02630.hp2 others(12): Show HG01433.hp2 HG02257.hp1 HG02630.hp2 HG02809.hp2 HG02896.hp1 HG02922.hp2 HG02965.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp1 HG03209.hp1 HG03453.hp1 HG03516.hp1 NA19043.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0026 a0001c0001t0028 others(6): Show a0001c0001t0025 a0001c0001t0026 a0001c0001t0028 a0001c0001t0029 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0043	a0001c0001t0025g0034 a0001c0001t0025g0041 a0001c0001t0025g0045 others(12): Show a0001c0001t0025g0034 a0001c0001t0025g0041 a0001c0001t0025g0045 a0001c0001t0026g0038 a0001c0001t0026g0042 a0001c0001t0026g0043 a0001c0001t0028g0039 a0001c0001t0028g0047 a0001c0001t0029g0035 a0001c0001t0029g0048 a0001c0001t0038g0036 a0001c0001t0039g0049 a0001c0001t0040g0040 a0001c0001t0041g0044 a0001c0001t0043g0046	15	384	0.0391	25	c.88- others(40): Show c.88-1054_88-1053insTCTCCTCTCCTCTCCTCTCCTCTCC	YWHAG	ENSG00000170027.7	transcript	ENST00000307630.5	protein_coding	1/1			chr7	TogoVar
YWHAQ_chr2_9578967_9635997	9597985	A A	ATTTTTTT others(18): Show ATTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0258 a0001c0001t0008g0258	1	272	0.0037	25	c.295 others(42): Show c.295-6495_295-6471dupAAAAAAAAAAAAAAAAAAAAAAAAA	YWHAQ	ENSG00000134308.14	transcript	ENST00000238081.8	protein_coding	2/5			chr2	TogoVar
YWHAZ_chr8_100911523_100957020	100918443	T T	TATATATA others(18): Show TATATATATATATATATATATATATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0207 a0001c0001t0207	a0001c0001t0207g0060 a0001c0001t0207g0060	1	392	0.0026	25	c.22 others(36): Show c.2249_*2250insTATATATATATATATATATATATAT	YWHAZ	ENSG00000164924.18	transcript	ENST00000395958.6	protein_coding	6/6	2249		chr8	TogoVar
ZAN_chr7_100728595_100802797	100742872	A A	AGGGAGAG others(18): Show AGGGAGAGGGAGGGGGGAGGGGGAGG	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0096 a0003c0003t0001g0096	1	308	0.0033	25	c.767 others(42): Show c.767-3651_767-3650insGAGGGGGAGGGGGAGAGGGAGGGGG	ZAN	ENSG00000146839.19	transcript	ENST00000613979.5	protein_coding	7/47		INFO_REALIGN_3_PRIME	chr7	TogoVar
ZAN_chr7_100728595_100802797	100742878	A A	AGGGAGGG others(18): Show AGGGAGGGGGAGGGGGAGGGGGAGGG	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG04115.hp1 NA18967.hp2 HG00544.hp2 HG04115.hp1 NA18967.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0009t0001 a0001c0001t0001 a0001c0009t0001	a0001c0001t0001g0153 a0001c0001t0001g0188 a0001c0009t0001g0145 a0001c0001t0001g0153 a0001c0001t0001g0188 a0001c0009t0001g0145	3	308	0.0097	25	c.767 others(42): Show c.767-3644_767-3643insGGGGGAGGGGGGAGGGGGAGGGGGA	ZAN	ENSG00000146839.19	transcript	ENST00000613979.5	protein_coding	7/47		INFO_REALIGN_3_PRIME	chr7	TogoVar
ZAN_chr7_100728595_100802797	100742878	A A	AGGGAGGG others(18): Show AGGGAGGGGGAGGGGGAGGGGGGAGG	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01981.hp1 NA19083.hp2 HG01261.hp2 HG01981.hp1 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0001 a0001c0006t0001 a0001c0001t0001 a0001c0006t0001	a0001c0001t0001g0195 a0001c0006t0001g0182 a0001c0006t0001g0185 a0001c0001t0001g0195 a0001c0006t0001g0182 a0001c0006t0001g0185	3	308	0.0097	25	c.767 others(42): Show c.767-3644_767-3643insGGGGGGAGGGGGAGGGGGAGGGGGA	ZAN	ENSG00000146839.19	transcript	ENST00000613979.5	protein_coding	7/47		INFO_REALIGN_3_PRIME	chr7	TogoVar
ZAN_chr7_100728595_100802797	100742878	A A	AGGGAGGG others(18): Show AGGGAGGGGGAGGGGGGAGGGGGAGG	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00558.hp1 HG02523.hp2 others(1): Show HG00438.hp2 HG00558.hp1 HG02523.hp2 NA19010.hp2	a0001 a0029 a0047 a0001 a0029 a0047	a0001c0001 a0001c0057 a0029c0025 others(1): Show a0001c0001 a0001c0057 a0029c0025 a0047c0052	a0001c0001t0001 a0001c0057t0001 a0029c0025t0001 others(1): Show a0001c0001t0001 a0001c0057t0001 a0029c0025t0001 a0047c0052t0001	a0001c0001t0001g0155 a0001c0057t0001g0117 a0029c0025t0001g0203 others(1): Show a0001c0001t0001g0155 a0001c0057t0001g0117 a0029c0025t0001g0203 a0047c0052t0001g0236	4	308	0.0130	25	c.767 others(42): Show c.767-3645_767-3644insGAGGGGGAGGGGGAGGGGGAGGGGG	ZAN	ENSG00000146839.19	transcript	ENST00000613979.5	protein_coding	7/47		INFO_REALIGN_3_PRIME	chr7	TogoVar
ZAN_chr7_100728595_100802797	100742882	A A	AGGGGGAG others(18): Show AGGGGGAGGGGGAGGGGGAGGGGGAG	intron_variant intron_variant	MODIFIER	HG02155.hp2 HG02155.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0106 a0001c0001t0001g0106	1	308	0.0033	25	c.767 others(42): Show c.767-3644_767-3643insGGGGGAGGGGGAGGGGGGAGGGGGA	ZAN	ENSG00000146839.19	transcript	ENST00000613979.5	protein_coding	7/47		INFO_REALIGN_3_PRIME	chr7	TogoVar
ZAP70_chr2_97708576_97744860	97717345	G G	GGACATGC others(18): Show GGACATGCGGAGCCTCTGGCTGGGGA	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18948.hp2 NA18953.hp1 others(12): Show NA18942.hp1 NA18948.hp2 NA18953.hp1 NA18957.hp1 NA18972.hp1 NA18982.hp1 NA18998.hp2 NA18999.hp2 NA19002.hp1 NA19054.hp2 NA19060.hp1 NA19065.hp1 NA19065.hp2 NA19074.hp1 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0001 a0001c0001t0004 a0001c0001t0005	a0001c0001t0001g0012 a0001c0001t0001g0071 a0001c0001t0001g0072 others(9): Show a0001c0001t0001g0012 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0004g0036 a0001c0001t0004g0248 a0001c0001t0004g0249 a0001c0001t0004g0250 a0001c0001t0004g0251 a0001c0001t0004g0252 a0001c0001t0004g0282 a0001c0001t0005g0247	15	368	0.0408	25	c.-22 others(42): Show c.-22+3376_-22+3400dupAGACATGCGGAGCCTCTGGCTGGGG	ZAP70	ENSG00000115085.15	transcript	ENST00000264972.10	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ZAP70_chr2_97708576_97744860	97717370	A A	AGACATGC others(18): Show AGACATGCGGAGCCTCTGGCTGGGGG	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00609.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0140 a0001c0001t0001g0140	1	368	0.0027	25	c.-22 others(42): Show c.-22+3394_-22+3418dupGCTGGGGGGACATGCGGAGCCTCTG	ZAP70	ENSG00000115085.15	transcript	ENST00000264972.10	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ZBTB16_chr11_114054711_114261765	114148469	C C	CTTCTTTC others(18): Show CTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG01261.hp2 NA18984.hp1 NA19079.hp1 HG01261.hp2 NA18984.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0045 a0001c0001t0080 a0001c0001t0012 a0001c0001t0045 a0001c0001t0080	a0001c0001t0012g0088 a0001c0001t0045g0198 a0001c0001t0080g0146 a0001c0001t0012g0088 a0001c0001t0045g0198 a0001c0001t0080g0146	3	278	0.0108	25	c.126 others(44): Show c.1269-7867_1269-7866insTCTTTCTTTCTTTCTTTCTTTCTTT	ZBTB16	ENSG00000109906.15	transcript	ENST00000335953.9	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
ZBTB1_chr14_64499770_64529951	64517781	A A	ATATATAT others(18): Show ATATATATATATATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18990.hp1 NA18990.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0157 a0001c0002t0001g0157	1	370	0.0027	25	c.-18 others(42): Show c.-18-3705_-18-3704insATATATATATATATATTTTTTTTTT	ZBTB1	ENSG00000126804.14	transcript	ENST00000683701.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr14	TogoVar
ZBTB21_chr21_41981831_42015360	41986006	T T	TAAAAAAA others(18): Show TAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01516.hp1 HG01516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0165 a0001c0001t0018g0165	1	398	0.0025	25	c.48 others(36): Show c.4888_*4889insTTTTTTTTTTTTTTTTTTTTTTTTT	ZBTB21	ENSG00000173276.14	transcript	ENST00000310826.10	protein_coding		824		chr21	TogoVar
ZBTB41_chr1_197148682_197206293	197164935	T T	TATATATT others(18): Show TATATATTATATATAATACATATCTA	intron_variant intron_variant	MODIFIER	HG03490.hp2 HG03492.hp2 NA18988.hp2 HG03490.hp2 HG03492.hp2 NA18988.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0034 a0001c0001t0002g0068 a0001c0001t0002g0034 a0001c0001t0002g0068	3	328	0.0092	25	c.207 others(44): Show c.2075-4946_2075-4922dupTAGATATGTATTATATATAATATAT	ZBTB41	ENSG00000177888.8	transcript	ENST00000367405.5	protein_coding	10/10			chr1	TogoVar
ZBTB43_chr9_126800040_126843210	126814358	A A	ATGAAATT others(18): Show ATGAAATTTACAAAGTAAATTTACAT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02886.hp2 HG03540.hp1 HG02572.hp2 HG02886.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0030 a0001c0001t0031 a0001c0001t0015 a0001c0001t0030 a0001c0001t0031	a0001c0001t0015g0311 a0001c0001t0030g0313 a0001c0001t0031g0312 a0001c0001t0015g0311 a0001c0001t0030g0313 a0001c0001t0031g0312	3	388	0.0077	25	c.-24 others(42): Show c.-24+5454_-24+5478dupAAAGTAAATTTACATTGAAATTTAC	ZBTB43	ENSG00000169155.10	transcript	ENST00000373464.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr9	TogoVar

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