Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

Sort By

Select column to sort.

Order by

Ascending or descending.

Show

Results per page.

⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRC27_chr10_132327193_132386508	132358656	G G	GAGGAGCC others(19): Show GAGGAGCCGAGGTGGTGGAGCGTGGGA	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0006 a0001c0003t0006	a0001c0003t0006g0098 a0001c0003t0006g0098	1	290	0.0035	26	c.117 others(45): Show c.1171-2781_1171-2780insGTGGGAAGGAGCCGAGGTGGTGGAGC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358676	C C	CAGCGTAG others(19): Show CAGCGTAGGGAGGAGCCGAGGTGGTGG	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0151 a0001c0001t0001g0151	1	290	0.0035	26	c.117 others(45): Show c.1171-2779_1171-2778insCGTAGGGAGGAGCCGAGGTGGTGGAG	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358676	C C	CAGTGTGG others(19): Show CAGTGTGGGGAGGAGCCAAGGTGGTGG	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0209 a0001c0001t0005g0209	1	290	0.0035	26	c.117 others(45): Show c.1171-2765_1171-2764insAAGGTGGTGGAGTGTGGGGAGGAGCC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358850	A A	AGGGAGGA others(19): Show AGGGAGGAGCCGAGGTGGTGGAGCGTG	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG03486.hp1 HG01257.hp2 HG03486.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0026 a0001c0006t0027 a0001c0006t0026 a0001c0006t0027	a0001c0006t0026g0106 a0001c0006t0027g0107 a0001c0006t0026g0106 a0001c0006t0027g0107	2	290	0.0069	26	c.117 others(45): Show c.1171-2584_1171-2583insGTGGGGAGGAGCCGAGGTGGTGGAGC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358896	G G	GTGGAGTG others(19): Show GTGGAGTGTGGGGAGGAGCCGAGGTGA	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02897.hp2 HG02896.hp1 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0005 a0001c0001t0002g0006 a0001c0001t0002g0005 a0001c0001t0002g0006	2	290	0.0069	26	c.117 others(45): Show c.1171-2556_1171-2555insTGTGGGGAGGAGCCGAGGTGATGGAG	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132359050	G G	GAGGAGCC others(19): Show GAGGAGCCGAGGTGGTGGAGCGTGGGA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01070.hp2 HG01346.hp1 others(1): Show HG00140.hp2 HG01070.hp2 HG01346.hp1 NA20129.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0010 a0002c0004t0010	a0002c0004t0010g0014 a0002c0004t0010g0015 a0002c0004t0010g0016 others(1): Show a0002c0004t0010g0014 a0002c0004t0010g0015 a0002c0004t0010g0016 a0002c0004t0010g0017	4	290	0.0138	26	c.117 others(45): Show c.1171-2387_1171-2386insGTGGGAAGGAGCCGAGGTGGTGGAGC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132359099	C C	CAGTGTGG others(19): Show CAGTGTGGGGAGGAGCCGAGGTGGTGG	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01069.hp2 HG01099.hp2 others(7): Show HG00733.hp2 HG01069.hp2 HG01099.hp2 HG02109.hp2 HG02615.hp1 HG02647.hp1 HG02717.hp1 HG03239.hp2 HG03579.hp1 HG04228.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0002c0004 a0001c0001 a0001c0005 a0002c0004	a0001c0001t0001 a0001c0001t0009 a0001c0001t0014 others(3): Show a0001c0001t0001 a0001c0001t0009 a0001c0001t0014 a0001c0005t0002 a0002c0004t0016 a0002c0004t0022	a0001c0001t0001g0156 a0001c0001t0009g0113 a0001c0001t0009g0114 others(7): Show a0001c0001t0001g0156 a0001c0001t0009g0113 a0001c0001t0009g0114 a0001c0001t0009g0115 a0001c0001t0009g0116 a0001c0001t0009g0203 a0001c0001t0014g0130 a0001c0005t0002g0108 a0002c0004t0016g0018 a0002c0004t0022g0012	10	290	0.0345	26	c.117 others(45): Show c.1171-2355_1171-2330dupTGTGGGGAGGAGCCGAGGTGGTGGAG	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC28_chr15_99246481_99395729	99282177	G G	GTTTTTTT others(19): Show GTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02055.hp2 HG02258.hp1 others(4): Show HG02004.hp2 HG02055.hp2 HG02258.hp1 HG02818.hp1 HG03225.hp1 HG03491.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0013 others(4): Show a0001c0001t0001 a0001c0001t0011 a0001c0001t0013 a0001c0001t0031 a0001c0001t0072 a0001c0001t0084 a0001c0001t0214	a0001c0001t0001g0326 a0001c0001t0011g0206 a0001c0001t0013g0276 others(4): Show a0001c0001t0001g0326 a0001c0001t0011g0206 a0001c0001t0013g0276 a0001c0001t0031g0288 a0001c0001t0072g0068 a0001c0001t0084g0067 a0001c0001t0214g0020	7	332	0.0211	26	c.210 others(43): Show c.210-5066_210-5065insTTTTTTTTTTTTTTTTTTTTTTTTTT	LRRC28	ENSG00000168904.15	transcript	ENST00000301981.8	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRC2_chr3_46510385_46571302	46533803	C C	CTTTTTCT others(19): Show CTTTTTCTTTCTTTCTTTCTTTCTTTG	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00609.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0046 a0002c0002t0046	a0002c0002t0046g0299 a0002c0002t0046g0299	1	364	0.0028	26	c.491 others(41): Show c.491-895_491-894insCAAAGAAAGAAAGAAAGAAAGAAAAA	LRRC2	ENSG00000163827.14	transcript	ENST00000395905.8	protein_coding	4/8			chr3	TogoVar
LRRC31_chr3_169834172_169874935	169857345	T T	TATATATA others(19): Show TATATATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0002 a0002	a0002c0014 a0002c0014	a0002c0014t0001 a0002c0014t0001	a0002c0014t0001g0263 a0002c0014t0001g0263	1	322	0.0031	26	c.488 others(41): Show c.488-474_488-473insGTGTGTATATATATATATATATATAT	LRRC31	ENSG00000114248.10	transcript	ENST00000316428.10	protein_coding	3/8			chr3	TogoVar
LRRC31_chr3_169834172_169874935	169857415	C C	CATATATA others(19): Show CATATATACATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02647.hp2 HG02717.hp1 others(3): Show HG02486.hp2 HG02647.hp2 HG02717.hp1 HG02976.hp2 NA19080.hp1 NA19240.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0006 a0001c0001 a0004c0006	a0001c0001t0001 a0004c0006t0001 a0001c0001t0001 a0004c0006t0001	a0001c0001t0001g0007 a0001c0001t0001g0119 a0001c0001t0001g0154 others(1): Show a0001c0001t0001g0007 a0001c0001t0001g0119 a0001c0001t0001g0154 a0004c0006t0001g0092	6	322	0.0186	26	c.488 others(41): Show c.488-544_488-543insATATATATATATATATATGTATATAT	LRRC31	ENSG00000114248.10	transcript	ENST00000316428.10	protein_coding	3/8			chr3	TogoVar
LRRC36_chr16_67321815_67390204	67331069	A A	AAGAGAGA others(19): Show AAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02145.hp1 HG02615.hp2 others(1): Show HG02109.hp2 HG02145.hp1 HG02615.hp2 HG02622.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0048 a0002c0002t0002g0049 a0002c0002t0002g0050 others(1): Show a0002c0002t0002g0048 a0002c0002t0002g0049 a0002c0002t0002g0050 a0002c0002t0002g0054	4	194	0.0206	26	c.70+ others(41): Show c.70+4157_70+4182dupGAGAGAGAGAGAGAGAGAGAGAGAGA	LRRC36	ENSG00000159708.18	transcript	ENST00000329956.11	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
LRRC37B_chr17_32002383_32058487	32054647	A A	ATGTGTGT others(19): Show ATGTGTGTGTGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0027 a0001c0001t0003g0027	1	242	0.0041	26	c.13 others(37): Show c.1319_*1320insTGTGTGTGTGTGTGTGTGTGTGTGTG	LRRC37B	ENSG00000185158.13	transcript	ENST00000543378.7	protein_coding		1161		chr17	TogoVar
LRRC3B_chr3_26617772_26715776	26668478	T T	TTTGTGGA others(19): Show TTTGTGGAATGCACATTTAGGTTTCCA	intron_variant intron_variant	MODIFIER	NA19057.hp2 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0266 a0001c0001t0001g0266	1	370	0.0027	26	c.-16 others(47): Show c.-160-41033_-160-41008dupTGTGGAATGCACATTTAGGTTTCC AT	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671369	T T	TAGAGAGA others(19): Show TAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0146 a0001c0001t0007g0146	1	370	0.0027	26	c.-16 others(47): Show c.-160-38143_-160-38142insGAGAGAGAGAGAGAGAGAGAGAGA GA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TAGAGAGA others(19): Show TAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0149 a0001c0001t0001g0149	1	370	0.0027	26	c.-16 others(47): Show c.-160-38124_-160-38099dupGAGAGAGAGAGAGAGAGAGAGAGA GA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATAGAGA others(19): Show TATAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02071.hp1 HG02559.hp1 others(1): Show HG00558.hp1 HG02071.hp1 HG02559.hp1 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0222 a0001c0001t0001g0232 a0001c0001t0002g0325 others(1): Show a0001c0001t0001g0222 a0001c0001t0001g0232 a0001c0001t0002g0325 a0001c0001t0003g0351	4	370	0.0108	26	c.-16 others(47): Show c.-160-38139_-160-38138insTAGAGAGAGAGAGAGAGAGAGAGA GA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(19): Show TATATATAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0334 a0001c0001t0001g0334	1	370	0.0027	26	c.-16 others(47): Show c.-160-38139_-160-38138insTATATAGAGAGAGAGAGAGAGAGA GA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(19): Show TATATATATAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0353 a0001c0001t0003g0353	1	370	0.0027	26	c.-16 others(47): Show c.-160-38139_-160-38138insTATATATAGAGAGAGAGAGAGAGA GA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(19): Show TATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18948.hp2 NA19064.hp2 NA18948.hp2 NA19064.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0091 a0001c0001t0001g0169 a0001c0001t0001g0091 a0001c0001t0001g0169	2	370	0.0054	26	c.-16 others(47): Show c.-160-38139_-160-38138insTATATATATAGAGAGAGAGAGAGA GA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(19): Show TATATATATATATAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0344 a0001c0001t0001g0344	1	370	0.0027	26	c.-16 others(47): Show c.-160-38139_-160-38138insTATATATATATAGAGAGAGAGAGA GA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(19): Show TATATATATATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0128 a0001c0001t0001g0128	1	370	0.0027	26	c.-16 others(47): Show c.-160-38139_-160-38138insTATATATATATATAGAGAGAGAGA GA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671413	G G	GAGAGAGA others(19): Show GAGAGAGAGAGAGAGAGAGAGAGAGAC	intron_variant intron_variant	MODIFIER	HG00408.hp1 NA18957.hp2 NA18989.hp2 HG00408.hp1 NA18957.hp2 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0001 a0001c0002t0002	a0001c0001t0001g0060 a0001c0002t0001g0083 a0001c0002t0002g0077 a0001c0001t0001g0060 a0001c0002t0001g0083 a0001c0002t0002g0077	3	370	0.0081	26	c.-16 others(47): Show c.-160-38099_-160-38098insGAGAGAGAGAGAGAGAGAGAGAGA CA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3C_chr17_39922732_39949999	39949844	A A	AGAATATA others(19): Show AGAATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0003 a0001c0006t0003	a0001c0006t0003g0092 a0001c0006t0003g0092	1	404	0.0025	26	c.51 others(37): Show c.5110_*5111insGAATATATATATATATATATATATAT	LRRC3C	ENSG00000204913.7	transcript	ENST00000377924.6	protein_coding		4846		chr17	TogoVar
LRRC40_chr1_70139805_70210579	70190677	T T	TAAAAAAA others(19): Show TAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01074.hp2 NA18522.hp2 NA18953.hp1 others(6): Show HG01074.hp2 NA18522.hp2 NA18953.hp1 NA18980.hp1 NA18986.hp2 NA19004.hp1 NA19007.hp1 NA19057.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0065 a0001c0001t0001g0066 others(6): Show a0001c0001t0001g0020 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0112 a0001c0001t0001g0132	9	320	0.0281	26	c.152 others(43): Show c.152-1405_152-1404insTTTTTTTTTTTTTTTTTTTTTTTTTT	LRRC40	ENSG00000066557.6	transcript	ENST00000370952.4	protein_coding	1/14			chr1	TogoVar
LRRC47_chr1_3773559_3801498	3797681	T T	TTAATTTT others(19): Show TTAATTTTTATATTAACCGTGTTAATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02109.hp2 HG02922.hp1 others(8): Show HG02109.hp1 HG02109.hp2 HG02922.hp1 HG02970.hp1 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03579.hp1 HG04184.hp1 HG06807.hp1 NA19043.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0006c0011 a0001c0001 a0006c0011	a0001c0001t0002 a0001c0001t0003 a0001c0001t0018 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0018 a0001c0001t0023 a0006c0011t0001	a0001c0001t0002g0005 a0001c0001t0003g0018 a0001c0001t0003g0199 others(4): Show a0001c0001t0002g0005 a0001c0001t0003g0018 a0001c0001t0003g0199 a0001c0001t0003g0200 a0001c0001t0018g0042 a0001c0001t0023g0150 a0006c0011t0001g0075	11	412	0.0267	26	c.-12 others(37): Show c.-1206_-1205insTATTAACACGGTTAATATAAAAATTA	LRRC47	ENSG00000130764.10	transcript	ENST00000378251.3	protein_coding		1184		chr1	TogoVar
LRRC4B_chr19_50511892_50573435	50543335	G G	GGTGTGTG others(19): Show GGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0254 a0001c0001t0001g0254	1	360	0.0028	26	c.297 others(43): Show c.297+5181_297+5206dupACACACACACACACACACACACACAC	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	2/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40584177	C C	CATATATA others(19): Show CATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA18906.hp1 HG03098.hp1 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0001 a0001c0001t0001 a0002c0003t0001	a0001c0001t0001g0003 a0002c0003t0001g0017 a0001c0001t0001g0003 a0002c0003t0001g0017	2	48	0.0417	26	c.-27 others(47): Show c.-270+63939_-270+63964dupATATATATATATATATATATATAT AT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40614439	T T	TGCTCTGG others(19): Show TGCTCTGGATTAAGCTTTGGCTTAAGA	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02055.hp2 HG02280.hp2 others(12): Show HG01074.hp2 HG02055.hp2 HG02280.hp2 HG02572.hp2 HG02622.hp2 HG02717.hp2 HG03098.hp1 HG03098.hp2 HG03225.hp2 HG03579.hp2 NA18906.hp1 NA18989.hp2 NA19030.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0002c0003t0001	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 others(12): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0028 a0001c0001t0001g0037 a0001c0001t0001g0047 a0001c0001t0002g0036 a0001c0002t0001g0010 a0001c0002t0001g0018 a0001c0002t0001g0024 a0001c0002t0001g0030 a0001c0002t0002g0008 a0002c0003t0001g0017	15	48	0.3125	26	c.-27 others(47): Show c.-270+33702_-270+33703insTCTTAAGCCAAAGCTTAATCCAGA GC	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40633325	T T	TTCTTTCT others(19): Show TTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0022 a0001c0002t0001g0022	1	48	0.0208	26	c.-27 others(47): Show c.-270+14816_-270+14817insGAAAGAAAGAAAGAAAGAAAGAAA GA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40633371	T T	TTCTTTCT others(19): Show TTCTTTCTTTCTTTCTTTCTTTCTCTC	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0016 a0001c0001t0002g0016	1	48	0.0208	26	c.-27 others(47): Show c.-270+14770_-270+14771insGAGAGAAAGAAAGAAAGAAAGAAA GA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41411142	A A	ATTTTTTT others(19): Show ATTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0001 a0001c0002t0001g0001	1	48	0.0208	26	c.-49 others(47): Show c.-496+48288_-496+48289insAAAAAAAAAAAAAAAAAAAAAAAA AA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC57_chr15_42532829_42553793	42537248	C C	CACACACA others(19): Show CACACACACACACACACACACACACAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0033 a0001c0001t0007g0033	1	356	0.0028	26	c.68 others(37): Show c.6834_*6835insATGTGTGTGTGTGTGTGTGTGTGTGT	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding		580		chr15	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CTATATAT others(19): Show CTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0058 a0001c0001t0058	a0001c0001t0058g0144 a0001c0001t0058g0144	1	356	0.0028	26	c.678 others(41): Show c.678+234_678+235insTATATATATATATATATATATATATA	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5			chr15	TogoVar
LRRC63_chr13_46206928_46282115	46255645	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0020 a0003c0006t0020	a0003c0006t0020g0185 a0003c0006t0020g0185	1	386	0.0026	26	c.122 others(45): Show c.1226+5155_1226+5156insAAAAAAAAAAAATATATATATATATA	LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	7/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC71_chr1_156915632_156938094	156930044	C C	CTCTTTCT others(19): Show CTCTTTCTTTCTTTCTTTCTTTCTTTT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG03139.hp2 HG02572.hp2 HG03139.hp2	a0007 a0007	a0007c0009 a0007c0009	a0007c0009t0001 a0007c0009t0001	a0007c0009t0001g0035 a0007c0009t0001g0035	2	402	0.0050	26	c.124 others(43): Show c.1240+332_1240+333insCTTTCTTTTTCTTTCTTTCTTTCTTT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	11/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156930060	T T	TTCTTTCT others(19): Show TTCTTTCTTTTTCTTTCTTTCTTTTTC	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00621.hp1 HG01070.hp2 others(34): Show HG00558.hp1 HG00621.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01256.hp1 HG01258.hp2 HG01952.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp2 HG02698.hp2 HG03927.hp1 HG04115.hp1 HG04228.hp1 NA18747.hp1 NA18940.hp1 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18951.hp1 NA18952.hp1 NA18952.hp2 NA18957.hp1 NA18968.hp2 NA18971.hp1 NA18973.hp1 NA18975.hp2 NA18977.hp2 NA18983.hp2 NA18993.hp1 NA19004.hp1 NA19054.hp1 NA19057.hp2 NA19060.hp2 NA19062.hp2 NA19086.hp2	a0002 a0005 a0008 a0002 a0005 a0008	a0002c0002 a0002c0006 a0005c0007 others(1): Show a0002c0002 a0002c0006 a0005c0007 a0008c0011	a0002c0002t0001 a0002c0006t0001 a0005c0007t0001 others(1): Show a0002c0002t0001 a0002c0006t0001 a0005c0007t0001 a0008c0011t0001	a0002c0002t0001g0007 a0002c0002t0001g0012 a0002c0002t0001g0023 others(27): Show a0002c0002t0001g0007 a0002c0002t0001g0012 a0002c0002t0001g0023 a0002c0002t0001g0030 a0002c0002t0001g0034 a0002c0002t0001g0094 a0002c0002t0001g0107 a0002c0002t0001g0124 a0002c0002t0001g0125 a0002c0002t0001g0126 a0002c0002t0001g0129 a0002c0002t0001g0130 a0002c0002t0001g0163 a0002c0002t0001g0164 a0002c0002t0001g0165 a0002c0002t0001g0166 a0002c0002t0001g0177 a0002c0002t0001g0205 a0002c0002t0001g0207 a0002c0002t0001g0208 a0002c0002t0001g0220 a0002c0002t0001g0221 a0002c0002t0001g0222 a0002c0002t0001g0225 a0002c0002t0001g0227 a0002c0002t0001g0237 a0002c0006t0001g0012 a0002c0006t0001g0174 a0005c0007t0001g0132 a0008c0011t0001g0169	37	402	0.0920	26	c.124 others(43): Show c.1240+332_1240+333insCTTTCTTTTTCTTTCTTTCTTTTTCT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	11/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156930060	T T	TTCTTTTT others(19): Show TTCTTTTTCTTTCTTTCTTTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG03710.hp1 NA18941.hp2 others(5): Show HG02735.hp1 HG03710.hp1 NA18941.hp2 NA18949.hp1 NA18956.hp1 NA18964.hp2 NA18983.hp1 NA19080.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0032 a0002c0002t0001g0170 a0002c0002t0001g0178 others(4): Show a0002c0002t0001g0032 a0002c0002t0001g0170 a0002c0002t0001g0178 a0002c0002t0001g0204 a0002c0002t0001g0226 a0002c0002t0001g0228 a0002c0002t0001g0238	8	402	0.0199	26	c.124 others(43): Show c.1240+332_1240+333insCTTTTTCTTTCTTTCTTTTTCTTTCT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	11/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC75A_chr17_16436577_16497193	16485681	T T	TGTGTGTG others(19): Show TGTGTGTGTGTGTGTGTGTGTGTGTTC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02965.hp2 HG02559.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0019 a0001c0001t0007 a0001c0001t0019	a0001c0001t0007g0044 a0001c0001t0019g0301 a0001c0001t0007g0044 a0001c0001t0019g0301	2	342	0.0059	26	c.246 others(43): Show c.246+6063_246+6064insGAACACACACACACACACACACACAC	LRRC75A	ENSG00000181350.12	transcript	ENST00000470794.2	protein_coding	1/3			chr17	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAAAGAAA others(19): Show GAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02258.hp2 HG02559.hp1 others(1): Show HG00621.hp1 HG02258.hp2 HG02559.hp1 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0039 a0001c0001t0068 others(1): Show a0001c0001t0002 a0001c0001t0039 a0001c0001t0068 a0001c0001t0093	a0001c0001t0002g0027 a0001c0001t0039g0098 a0001c0001t0068g0069 others(1): Show a0001c0001t0002g0027 a0001c0001t0039g0098 a0001c0001t0068g0069 a0001c0001t0093g0102	4	108	0.0370	26	c.100 others(45): Show c.100+39665_100+39666insAAGAAAGAAAGAAAGAAAGAAAGAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAGAGAAA others(19): Show GAGAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03195.hp2 HG02622.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0076 a0001c0004t0049 a0001c0001t0076 a0001c0004t0049	a0001c0001t0076g0053 a0001c0004t0049g0033 a0001c0001t0076g0053 a0001c0004t0049g0033	2	108	0.0185	26	c.100 others(45): Show c.100+39667_100+39668insGAAAGAAAGAAAGAAAGAAAGAAAGA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69865469	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0051 a0001c0001t0034g0051	1	108	0.0093	26	c.647 others(45): Show c.647+27211_647+27212insTTTTTTTTTTTTTTTTTTTTTTTTTT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	7/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69976866	G G	GATACTTC others(19): Show GATACTTCTAAGTTGTATCTCCAGCTA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01515.hp2 HG02129.hp1 others(11): Show HG01243.hp2 HG01515.hp2 HG02129.hp1 HG02735.hp2 HG03710.hp2 HG04184.hp1 NA18966.hp1 NA18968.hp2 NA18977.hp2 NA18992.hp2 NA19000.hp1 NA19080.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0008 a0001c0001 a0001c0003 a0001c0008	a0001c0001t0001 a0001c0001t0006 a0001c0001t0021 others(10): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0021 a0001c0001t0030 a0001c0001t0035 a0001c0001t0037 a0001c0001t0038 a0001c0001t0041 a0001c0001t0072 a0001c0003t0020 a0001c0003t0028 a0001c0003t0084 a0001c0008t0024	a0001c0001t0001g0079 a0001c0001t0001g0087 a0001c0001t0006g0081 others(11): Show a0001c0001t0001g0079 a0001c0001t0001g0087 a0001c0001t0006g0081 a0001c0001t0021g0003 a0001c0001t0030g0077 a0001c0001t0035g0020 a0001c0001t0037g0016 a0001c0001t0038g0001 a0001c0001t0041g0002 a0001c0001t0072g0062 a0001c0003t0020g0005 a0001c0003t0028g0014 a0001c0003t0084g0037 a0001c0008t0024g0107	14	108	0.1296	26	c.712 others(43): Show c.712-3485_712-3460dupTACTTCTAAGTTGTATCTCCAGCTAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	8/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8D_chr1_89816032_89941611	89860785	A A	AAAATATA others(19): Show AAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	210	0.0048	26	c.-3+ others(43): Show c.-3+17004_-3+17005insAATATATATATATATATATATATATA	LRRC8D	ENSG00000171492.14	transcript	ENST00000337338.9	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC9_chr14_59915144_60071817	60067740	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02074.hp2 NA18612.hp1 NA18941.hp2 others(4): Show HG02074.hp2 NA18612.hp1 NA18941.hp2 NA18946.hp1 NA18961.hp1 NA19086.hp2 NA19087.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0001c0001t0010 a0001c0001t0023 others(1): Show a0001c0001t0001 a0001c0001t0010 a0001c0001t0023 a0002c0003t0005	a0001c0001t0001g0027 a0001c0001t0001g0045 a0001c0001t0001g0218 others(4): Show a0001c0001t0001g0027 a0001c0001t0001g0045 a0001c0001t0001g0218 a0001c0001t0010g0053 a0001c0001t0010g0054 a0001c0001t0023g0049 a0002c0003t0005g0205	7	322	0.0217	26	c.43 others(37): Show c.4378_*4379insATATATATATATATATATATATATAT	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding		924		chr14	TogoVar
LRRC9_chr14_59915144_60071817	60067760	T T	TATATATA others(19): Show TATATATATATATATATATATATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18975.hp2 NA19055.hp2 NA18975.hp2 NA19055.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0005 a0002c0003t0005	a0002c0003t0005g0189 a0002c0003t0005g0190 a0002c0003t0005g0189 a0002c0003t0005g0190	2	322	0.0062	26	c.43 others(37): Show c.4398_*4399insATATATATATATATATATATATATAA	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding		944		chr14	TogoVar
LRRFIP1_chr2_237622587_237786643	237666920	C C	CTTTCTTT others(19): Show CTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG03834.hp1 HG03669.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0266 a0001c0001t0003g0247 a0001c0001t0002g0266 a0001c0001t0003g0247	2	276	0.0073	26	c.96+ others(43): Show c.96+39203_96+39228dupTCTTTTTCTTTCTTTCTTTCTTTCTT	LRRFIP1	ENSG00000124831.20	transcript	ENST00000308482.14	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
LRRIQ1_chr12_85031351_85250105	85102949	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0144 a0001c0001t0002g0144	1	228	0.0044	26	c.321 others(45): Show c.3210-1054_3210-1053insTATATATATATATATATATATATATA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	13/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85174701	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0170 a0002c0003t0001g0170	1	228	0.0044	26	c.482 others(47): Show c.4822+14009_4822+14010insAAAAAAAAAAAAAAAAAAAAAAAA AA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ4_chr3_169807870_169842773	169830377	G G	GAAAAAAA others(19): Show GAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0004 a0001c0007t0004	a0001c0007t0004g0324 a0001c0007t0004g0324	1	386	0.0026	26	c.119 others(42): Show c.1195-108_1195-83dupAAAAAAAAAAAAAAAAAAAAAAAAAA	LRRIQ4	ENSG00000188306.7	transcript	ENST00000340806.7	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr3	TogoVar

Search by Variant

Search

Search Results (Total: 10000 hits)