Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRK1_chr15_100914357_101083257	100962819	A A	ACACATAT others(19): Show ACACATATATATATATATACGTATTTT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0082 a0001c0082	a0001c0082t0038 a0001c0082t0038	a0001c0082t0038g0238 a0001c0082t0038g0238	1	338	0.0030	26	c.98- others(43): Show c.98-10985_98-10984insCACATATATATATATATACGTATTTT	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33			chr15	TogoVar
LRRK2_chr12_40219997_40374285	40242804	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0007 a0001c0008t0007	a0001c0008t0007g0321 a0001c0008t0007g0321	1	382	0.0026	26	c.707 others(41): Show c.707-733_707-732insAAAAAAAAAAAAAAAAAAAAAAAAAA	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	6/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40293894	C C	CATATATA others(19): Show CATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02622.hp2 NA18747.hp2 others(1): Show HG02486.hp1 HG02622.hp2 NA18747.hp2 NA18992.hp2	a0004 a0024 a0004 a0024	a0004c0006 a0004c0054 a0024c0056 a0004c0006 a0004c0054 a0024c0056	a0004c0006t0001 a0004c0054t0001 a0024c0056t0004 a0004c0006t0001 a0004c0054t0001 a0024c0056t0004	a0004c0006t0001g0332 a0004c0006t0001g0342 a0004c0054t0001g0210 others(1): Show a0004c0006t0001g0332 a0004c0006t0001g0342 a0004c0054t0001g0210 a0024c0056t0004g0140	4	382	0.0105	26	c.280 others(43): Show c.2808+232_2808+233insTATATATATATATATATATATATATA	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	21/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GACATATA others(19): Show GACATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01975.hp2 HG02080.hp1 others(1): Show HG01081.hp1 HG01975.hp2 HG02080.hp1 NA19030.hp1	a0001 a0009 a0001 a0009	a0001c0003 a0001c0011 a0009c0027 a0001c0003 a0001c0011 a0009c0027	a0001c0003t0036 a0001c0011t0001 a0009c0027t0001 a0001c0003t0036 a0001c0011t0001 a0009c0027t0001	a0001c0003t0036g0251 a0001c0011t0001g0154 a0001c0011t0001g0159 others(1): Show a0001c0003t0036g0251 a0001c0011t0001g0154 a0001c0011t0001g0159 a0009c0027t0001g0174	4	422	0.0095	26	c.-27 others(45): Show c.-278-9838_-278-9837insCATATATATATATATATATATATATA	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GATATATA others(19): Show GATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00741.hp2 HG01069.hp1 others(15): Show HG00140.hp2 HG00741.hp2 HG01069.hp1 HG01081.hp2 HG01884.hp2 HG02055.hp2 HG02165.hp1 HG02738.hp1 HG03017.hp1 HG03041.hp1 HG03516.hp2 NA18947.hp2 NA18951.hp2 NA18956.hp2 NA18967.hp2 NA19012.hp2 NA19055.hp1 NA19060.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(3): Show a0001c0001 a0001c0002 a0001c0004 a0001c0018 a0001c0022 a0002c0009	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(9): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0034 a0001c0002t0002 a0001c0002t0012 a0001c0004t0005 a0001c0004t0008 a0001c0004t0011 a0001c0018t0042 a0001c0022t0003 a0002c0009t0002	a0001c0001t0001g0121 a0001c0001t0001g0156 a0001c0001t0001g0195 others(14): Show a0001c0001t0001g0121 a0001c0001t0001g0156 a0001c0001t0001g0195 a0001c0001t0001g0200 a0001c0001t0003g0348 a0001c0001t0003g0366 a0001c0001t0007g0035 a0001c0001t0007g0203 a0001c0001t0034g0109 a0001c0002t0002g0119 a0001c0002t0012g0267 a0001c0004t0005g0016 a0001c0004t0008g0189 a0001c0004t0011g0067 a0001c0018t0042g0270 a0001c0022t0003g0369 a0002c0009t0002g0223	18	422	0.0427	26	c.-27 others(45): Show c.-278-9836_-278-9811dupATATATATATATATATATATATATAT	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN2_chr1_204612170_204690738	204631256	C C	CAATATAT others(19): Show CAATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0227 a0002c0003t0003g0227	1	328	0.0031	26	c.-22 others(47): Show c.-226-11039_-226-11038insTATATATATATATATATATATATA TT	LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1			chr1	TogoVar
LRRTM3_chr10_66921036_67106551	66978542	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18999.hp1 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0187 a0001c0001t0002g0187	1	294	0.0034	26	c.153 others(47): Show c.1536+50091_1536+50092insTATATATATATATATATATATATA TA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978544	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18959.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0186 a0001c0001t0001g0186	1	294	0.0034	26	c.153 others(47): Show c.1536+50093_1536+50094insTATATATATATATATATATATATA TA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAAATA others(19): Show AAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19006.hp1 NA19006.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0196 a0001c0001t0002g0196	1	294	0.0034	26	c.153 others(47): Show c.1536+50101_1536+50102insAAAATATATATATATATATATATA TA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76812791	T T	TCCCCCCT others(19): Show TCCCCCCTTCCTCCTCCTCTCCCTCCC	intron_variant intron_variant	MODIFIER	HG01496.hp1 NA18953.hp1 NA18965.hp2 HG01496.hp1 NA18953.hp1 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0020 a0001c0001t0001g0028 a0001c0001t0002g0070 a0001c0001t0001g0020 a0001c0001t0001g0028 a0001c0001t0002g0070	3	128	0.0234	26	c.155 others(47): Show c.1552-63876_1552-63875insGGGAGGGAGAGGAGGAGGAAGGGG GG	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTATATAT others(19): Show GTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0010 a0001c0001t0004g0010	1	128	0.0078	26	c.155 others(49): Show c.1552-230626_1552-230625insTATATATATATATATATATATA TATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77207372	T T	TATATATA others(19): Show TATATATATATATATATACACACACAC	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0044	1	128	0.0078	26	c.155 others(49): Show c.1551+310945_1551+310946insGTGTGTGTGTATATATATATAT ATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77207372	T T	TATATATA others(19): Show TATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0079 a0001c0001t0002g0079	1	128	0.0078	26	c.155 others(49): Show c.1551+310945_1551+310946insGTGTGTGTATATATATATATAT ATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRTM2_chr12_1815565_1841753	1822464	A A	AGCCCCAG others(19): Show AGCCCCAGGGACACCACCCTGAGCCCG	intron_variant intron_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0002 a0001c0013t0002	a0001c0013t0002g0189 a0001c0013t0002g0189	1	462	0.0022	26	c.-25 others(45): Show c.-259+1660_-259+1685dupACACCACCCTGAGCCCGGCCCCAGGG	LRTM2	ENSG00000166159.11	transcript	ENST00000299194.6	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr12	TogoVar
LSAMP_chr3_115797374_116450487	115818790	T T	TTATATAC others(19): Show TTATATACATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0021 a0001c0001t0041g0021	1	104	0.0096	26	c.920 others(43): Show c.920-8377_920-8376insTATATATATATATATATATGTATATA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	6/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115818790	T T	TTATATAT others(19): Show TTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00733.hp1 HG01243.hp2 others(7): Show HG00558.hp1 HG00733.hp1 HG01243.hp2 HG01261.hp1 HG01433.hp1 HG02055.hp2 HG04184.hp1 NA18977.hp2 NA18984.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0008 a0001c0001t0023 others(7): Show a0001c0001t0006 a0001c0001t0008 a0001c0001t0023 a0001c0001t0031 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0047 a0001c0001t0050	a0001c0001t0006g0102 a0001c0001t0008g0032 a0001c0001t0023g0077 others(7): Show a0001c0001t0006g0102 a0001c0001t0008g0032 a0001c0001t0023g0077 a0001c0001t0031g0050 a0001c0001t0034g0018 a0001c0001t0035g0052 a0001c0001t0036g0080 a0001c0001t0037g0087 a0001c0001t0047g0069 a0001c0001t0050g0066	10	104	0.0962	26	c.920 others(43): Show c.920-8402_920-8377dupTATATATATATATATATATATATATA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	6/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115869269	G G	GGAGAGAG others(19): Show GGAGAGAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02293.hp2 HG02109.hp2 HG02293.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0042 a0001c0002t0056 a0001c0001t0042 a0001c0002t0056	a0001c0001t0042g0022 a0001c0002t0056g0062 a0001c0001t0042g0022 a0001c0002t0056g0062	2	104	0.0192	26	c.515 others(45): Show c.515-16678_515-16653dupTCTCTCTCTCTCTCTCTCTCTCTCTC	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116197130	G G	GACACACA others(19): Show GACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0007 a0001c0001t0003g0007	1	104	0.0096	26	c.156 others(47): Show c.156-110600_156-110575dupGTGTGTGTGTGTGTGTGTGTGTGT GT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273683	C C	CAGATATA others(19): Show CAGATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02622.hp1 HG03704.hp1 others(1): Show HG00735.hp2 HG02622.hp1 HG03704.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0022 a0001c0001t0058 others(1): Show a0001c0001t0019 a0001c0001t0022 a0001c0001t0058 a0001c0001t0069	a0001c0001t0019g0003 a0001c0001t0022g0074 a0001c0001t0058g0093 others(1): Show a0001c0001t0019g0003 a0001c0001t0022g0074 a0001c0001t0058g0093 a0001c0001t0069g0073	4	104	0.0385	26	c.155 others(47): Show c.155+171193_155+171194insATATATATATATATATATATATAT CT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273707	T T	TATATATA others(19): Show TATATATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0101 a0001c0001t0017g0101	1	104	0.0096	26	c.155 others(47): Show c.155+171169_155+171170insGTGTGTATATATATATATATATAT AT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273707	T T	TATATATA others(19): Show TATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG03041.hp1 HG03710.hp1 others(1): Show HG01175.hp1 HG03041.hp1 HG03710.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0035 a0001c0001t0043 a0001c0001t0071 others(1): Show a0001c0001t0035 a0001c0001t0043 a0001c0001t0071 a0001c0002t0001	a0001c0001t0035g0052 a0001c0001t0043g0017 a0001c0001t0071g0045 others(1): Show a0001c0001t0035g0052 a0001c0001t0043g0017 a0001c0001t0071g0045 a0001c0002t0001g0084	4	104	0.0385	26	c.155 others(47): Show c.155+171169_155+171170insGTGTATATATATATATATATATAT AT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645511	C C	CACACACA others(19): Show CACACACACACACACACACACACACAG	intron_variant intron_variant	MODIFIER	NA19080.hp1 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0195 a0001c0001t0001g0195	1	408	0.0025	26	c.162 others(43): Show c.1623+652_1623+653insCTGTGTGTGTGTGTGTGTGTGTGTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645511	C C	CACACACA others(19): Show CACACACACACACACACACACAGACAG	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG01433.hp2 HG02015.hp1 others(16): Show HG00544.hp1 HG01433.hp2 HG02015.hp1 HG02129.hp1 HG03669.hp2 HG03710.hp1 HG04115.hp2 NA18950.hp2 NA18955.hp2 NA18973.hp2 NA18987.hp2 NA18990.hp1 NA18999.hp2 NA19004.hp1 NA19009.hp1 NA19079.hp1 NA19088.hp2 NA19091.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0032 a0001c0001t0064 a0001c0001t0074	a0001c0001t0001g0076 a0001c0001t0001g0103 a0001c0001t0001g0111 others(14): Show a0001c0001t0001g0076 a0001c0001t0001g0103 a0001c0001t0001g0111 a0001c0001t0001g0135 a0001c0001t0002g0314 a0001c0001t0006g0126 a0001c0001t0006g0282 a0001c0001t0007g0073 a0001c0001t0007g0074 a0001c0001t0007g0075 a0001c0001t0009g0004 a0001c0001t0009g0139 a0001c0001t0009g0140 a0001c0001t0032g0005 a0001c0001t0032g0108 a0001c0001t0064g0127 a0001c0001t0074g0219	19	408	0.0466	26	c.162 others(43): Show c.1623+652_1623+653insCTGTCTGTGTGTGTGTGTGTGTGTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSM10_chr1_36388436_36402908	36402885	T T	TTATATAT others(19): Show TTATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03239.hp2 NA18978.hp2 HG03239.hp2 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0023 a0001c0001t0001g0003 a0001c0001t0001g0023	2	432	0.0046	26	c.-51 others(37): Show c.-5144_-5143insTATATATATATATATATATATATATA	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4978		chr1	TogoVar
LSM10_chr1_36388436_36402908	36402900	T T	TATATATA others(19): Show TATATATATATATATATATATACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	432	0.0023	26	c.-51 others(37): Show c.-5159_-5158insGTGTGTATATATATATATATATATAT	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4993		chr1	TogoVar
LSM10_chr1_36388436_36402908	36402900	T T	TATATATA others(19): Show TATATATATATATATATATATATACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18957.hp2 NA18957.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	432	0.0023	26	c.-51 others(37): Show c.-5159_-5158insGTGTATATATATATATATATATATAT	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4993		chr1	TogoVar
LSM10_chr1_36388436_36402908	36402900	T T	TATATATA others(19): Show TATATATATATATATATATATATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18943.hp2 NA19088.hp2 NA18943.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0059 a0001c0001t0001g0003 a0001c0001t0001g0059	2	432	0.0046	26	c.-51 others(37): Show c.-5159_-5158insGTATATATATATATATATATATATAT	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4993		chr1	TogoVar
LSM2_chr6_31792396_31811966	31808996	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	427	0.0023	26	c.-22 others(37): Show c.-2240_-2239insTTTTTTTTTTTTTTTTTTTTTTTTTT	LSM2	ENSG00000204392.11	transcript	ENST00000375661.6	protein_coding		2031		chr6	TogoVar
LSP1_chr11_1848084_1897263	1849554	G G	GCGCGCGC others(19): Show GCGCGCGCACACACACACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01167.hp1 HG01169.hp2 HG01346.hp1 HG01167.hp1 HG01169.hp2 HG01346.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0003c0004 a0001c0002 a0003c0004	a0001c0002t0001 a0003c0004t0001 a0001c0002t0001 a0003c0004t0001	a0001c0002t0001g0141 a0003c0004t0001g0034 a0001c0002t0001g0141 a0003c0004t0001g0034	3	360	0.0083	26	c.-35 others(37): Show c.-3591_-3590insCGCGCGCACACACACACACACACACA	LSP1	ENSG00000130592.17	transcript	ENST00000311604.8	protein_coding		3529		chr11	TogoVar
LSP1_chr11_1848084_1897263	1849554	G G	GCGCGCGC others(19): Show GCGCGCGCGCACACACACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp2 HG01346.hp2 HG02818.hp1 others(5): Show HG01261.hp2 HG01346.hp2 HG02818.hp1 HG02895.hp2 HG02970.hp2 HG02976.hp1 HG03041.hp1 NA18945.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0003 a0003c0004 others(1): Show a0001c0002 a0001c0003 a0003c0004 a0003c0006	a0001c0002t0001 a0001c0003t0001 a0003c0004t0001 others(1): Show a0001c0002t0001 a0001c0003t0001 a0003c0004t0001 a0003c0006t0001	a0001c0002t0001g0005 a0001c0003t0001g0184 a0001c0003t0001g0185 others(5): Show a0001c0002t0001g0005 a0001c0003t0001g0184 a0001c0003t0001g0185 a0001c0003t0001g0186 a0003c0004t0001g0218 a0003c0004t0001g0230 a0003c0004t0001g0242 a0003c0006t0001g0149	8	360	0.0222	26	c.-35 others(37): Show c.-3591_-3590insCGCGCGCGCACACACACACACACACA	LSP1	ENSG00000130592.17	transcript	ENST00000311604.8	protein_coding		3529		chr11	TogoVar
LSR_chr19_35244002_35272964	35251843	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA20300.hp1 HG03098.hp1 NA20300.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0054 a0002c0001t0001g0054	2	438	0.0046	26	c.454 others(43): Show c.454+1193_454+1194insTTTTTTTTTTTTTTTTTTTTTTTTTT	LSR	ENSG00000105699.17	transcript	ENST00000605618.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr19	TogoVar
LSS_chr21_46183446_46233774	46229146	C C	CTGGTGGG others(19): Show CTGGTGGGTGGGGAGGTGGGGGCGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0010 a0001c0006t0010	a0001c0006t0010g0123 a0001c0006t0010g0123	1	358	0.0028	26	c.-40 others(35): Show c.-402_-401insCCCCGCCCCCACCTCCCCACCCACCA	LSS	ENSG00000160285.15	transcript	ENST00000397728.8	protein_coding		373		chr21	TogoVar
LTBP1_chr2_32941953_33404509	33182687	G G	GAGATATA others(19): Show GAGATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01258.hp2 HG02257.hp2 others(2): Show HG01256.hp1 HG01258.hp2 HG02257.hp2 HG03130.hp1 NA19043.hp2	a0001 a0009 a0001 a0009	a0001c0003 a0001c0007 a0001c0008 others(2): Show a0001c0003 a0001c0007 a0001c0008 a0001c0017 a0009c0033	a0001c0003t0029 a0001c0007t0007 a0001c0008t0010 others(2): Show a0001c0003t0029 a0001c0007t0007 a0001c0008t0010 a0001c0017t0012 a0009c0033t0026	a0001c0003t0029g0040 a0001c0007t0007g0091 a0001c0008t0010g0106 others(2): Show a0001c0003t0029g0040 a0001c0007t0007g0091 a0001c0008t0010g0106 a0001c0017t0012g0114 a0009c0033t0026g0121	5	164	0.0305	26	c.120 others(45): Show c.1202-4168_1202-4167insGATATATATATATATATATATATATA	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	5/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33254852	G G	GTTTTTTT others(19): Show GTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0137 a0001c0001t0003g0137	1	164	0.0061	26	c.216 others(45): Show c.2167+2014_2167+2039dupTTTTTTTTTTTTTTTTTTTTTTTTTT	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	11/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33277797	C C	CTTTCTTT others(19): Show CTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0018 a0001c0018	a0001c0018t0001 a0001c0018t0001	a0001c0018t0001g0058 a0001c0018t0001g0058	1	164	0.0061	26	c.299 others(45): Show c.2992+1875_2992+1876insTTCTTTCTTTCTTTCTTTCTTTCTTT	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	18/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP2_chr14_74493183_74617237	74564023	C C	CTATATAT others(19): Show CTATATATATATTTATATATATATATT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0047 a0001c0047	a0001c0047t0001 a0001c0047t0001	a0001c0047t0001g0119 a0001c0047t0001g0119	1	282	0.0036	26	c.831 others(43): Show c.831-8356_831-8331dupAATATATATATATAAATATATATATA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35			chr14	TogoVar
LTBP2_chr14_74493183_74617237	74564241	A A	ATATTTAT others(19): Show ATATTTATATATATTTATATATATATT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0192 a0001c0002t0001g0192	1	282	0.0036	26	c.831 others(43): Show c.831-8549_831-8548insAATATATATATAAATATATATAAATA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35			chr14	TogoVar
LTBP2_chr14_74493183_74617237	74564261	A A	ATATTTAT others(19): Show ATATTTATATATATATTTATATATATT	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00609.hp2	a0003 a0003	a0003c0020 a0003c0020	a0003c0020t0012 a0003c0020t0012	a0003c0020t0012g0162 a0003c0020t0012g0162	1	282	0.0036	26	c.831 others(43): Show c.831-8569_831-8568insAATATATATAAATATATATATAAATA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35			chr14	TogoVar
LTBP2_chr14_74493183_74617237	74564297	T T	TTATATAT others(19): Show TTATATATATATTTATATATATATTTA	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG03139.hp1 HG03209.hp2 others(1): Show HG02451.hp2 HG03139.hp1 HG03209.hp2 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0039 a0001c0043 a0001c0002 a0001c0039 a0001c0043	a0001c0002t0003 a0001c0039t0003 a0001c0043t0013 a0001c0002t0003 a0001c0039t0003 a0001c0043t0013	a0001c0002t0003g0070 a0001c0002t0003g0071 a0001c0039t0003g0073 others(1): Show a0001c0002t0003g0070 a0001c0002t0003g0071 a0001c0039t0003g0073 a0001c0043t0013g0072	4	282	0.0142	26	c.831 others(43): Show c.831-8605_831-8604insTAAATATATATATAAATATATATATA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35			chr14	TogoVar
LTBP2_chr14_74493183_74617237	74604164	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG03453.hp2 NA19043.hp1 HG02723.hp1 HG03453.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0037 a0001c0001 a0001c0037	a0001c0001t0001 a0001c0001t0007 a0001c0037t0005 a0001c0001t0001 a0001c0001t0007 a0001c0037t0005	a0001c0001t0001g0055 a0001c0001t0007g0056 a0001c0037t0005g0047 a0001c0001t0001g0055 a0001c0001t0007g0056 a0001c0037t0005g0047	3	282	0.0106	26	c.495 others(41): Show c.495-460_495-459insTTTTTTTTTTTTTTTTTTTTTTTTTT	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	1/35			chr14	TogoVar
LTBP4_chr19_40596369_40634818	40625278	A A	ATATATAT others(19): Show ATATATATATATAAATATATATATATT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0020 a0001c0020	a0001c0020t0001 a0001c0020t0001	a0001c0020t0001g0211 a0001c0020t0001g0211	1	338	0.0030	26	c.383 others(43): Show c.3833-567_3833-566insAATATATATATATTTATATATATATA	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding	26/29		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP4_chr19_40596369_40634818	40625286	A A	ATATATAT others(19): Show ATATATATATATAAATATATATATATT	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0001 a0002c0010t0001	a0002c0010t0001g0101 a0002c0010t0001g0101	1	338	0.0030	26	c.383 others(43): Show c.3833-559_3833-558insAATATATATATATTTATATATATATA	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding	26/29		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(19): Show ATATATATATATATATATATATATATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0253 a0001c0001t0001g0253	1	404	0.0025	26	c.29 others(37): Show c.2946_*2947insAATATATATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(19): Show ATATATATATATATATATATATATTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02074.hp1 HG02074.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0185 a0003c0003t0001g0185	1	404	0.0025	26	c.29 others(37): Show c.2946_*2947insAAAATATATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(19): Show ATATATATATATATATATATATTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18948.hp2 NA21309.hp1 NA18948.hp2 NA21309.hp1	a0004 a0014 a0004 a0014	a0004c0005 a0014c0027 a0004c0005 a0014c0027	a0004c0005t0001 a0014c0027t0001 a0004c0005t0001 a0014c0027t0001	a0004c0005t0001g0058 a0014c0027t0001g0077 a0004c0005t0001g0058 a0014c0027t0001g0077	2	404	0.0050	26	c.29 others(37): Show c.2946_*2947insAAAAAATATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(19): Show ATATATATATATATATTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0056 a0004c0005t0001g0056	1	404	0.0025	26	c.29 others(37): Show c.2946_*2947insAAAAAAAAAAAATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LUC7L2_chr7_139354894_139428454	139399449	A A	ATTTTTTT others(19): Show ATTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0169 a0001c0001t0001g0169	1	276	0.0036	26	c.255 others(41): Show c.255+765_255+790dupTTTTTTTTTTTTTTTTTTTTTTTTTT	LUC7L2	ENSG00000146963.18	transcript	ENST00000354926.9	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr7	TogoVar
LUC7L_chr16_183990_234449	188349	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0059 a0002c0002t0001g0059	1	350	0.0029	26	c.84 others(35): Show c.848_*849insTTTTTTTTTTTTTTTTTTTTTTTTTT	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		640		chr16	TogoVar
LURAP1L_chr9_12770020_12828060	12786581	T T	TATATATA others(19): Show TATATATATATATATATATATATAAAC	intron_variant intron_variant	MODIFIER	NA18986.hp2 NA19080.hp1 NA18986.hp2 NA19080.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0002 a0001c0001t0002 a0002c0002t0002	a0001c0001t0002g0244 a0002c0002t0002g0371 a0001c0001t0002g0244 a0002c0002t0002g0371	2	418	0.0048	26	c.312 others(45): Show c.312+10555_312+10556insTATATATATATATATATATATAAACA	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar
LURAP1L_chr9_12770020_12828060	12788189	A A	AAGAAAGA others(19): Show AAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG01943.hp1 HG02132.hp2 others(2): Show HG00408.hp2 HG01943.hp1 HG02132.hp2 NA18960.hp2 NA19090.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0004 a0002c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0004 a0002c0002t0001 a0002c0002t0002	a0001c0001t0001g0196 a0001c0001t0001g0245 a0001c0001t0004g0288 others(2): Show a0001c0001t0001g0196 a0001c0001t0001g0245 a0001c0001t0004g0288 a0002c0002t0001g0370 a0002c0002t0002g0034	5	418	0.0120	26	c.312 others(45): Show c.312+12167_312+12168insGAAAGAAAGAAAGAAAGAAAGAGAAA	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar

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