Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
NINJ2_chr12_559296_668445	629896	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAAAAAATAT	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02523.hp1 HG02132.hp1 HG02523.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0326 a0001c0001t0001g0331 a0001c0001t0001g0326 a0001c0001t0001g0331	2	404	0.0050	26	c.33+ others(43): Show c.33+33431_33+33432insATATTTTTTTTTTTTTTTTTTTTTTT	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NINJ2_chr12_559296_668445	629896	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAAAATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01192.hp1 NA19004.hp2 others(1): Show HG00438.hp1 HG01192.hp1 NA19004.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0028 a0001c0001t0001g0351 a0001c0001t0001g0376 others(1): Show a0001c0001t0001g0028 a0001c0001t0001g0351 a0001c0001t0001g0376 a0001c0001t0002g0193	4	404	0.0099	26	c.33+ others(43): Show c.33+33431_33+33432insATATATTTTTTTTTTTTTTTTTTTTT	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NINJ2_chr12_559296_668445	629896	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAATATATAT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02080.hp2 HG02698.hp1 others(5): Show HG00735.hp1 HG02080.hp2 HG02698.hp1 NA18947.hp2 NA18969.hp1 NA18971.hp1 NA18979.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0192 a0001c0001t0001g0213 a0001c0001t0001g0286 others(5): Show a0001c0001t0001g0192 a0001c0001t0001g0213 a0001c0001t0001g0286 a0001c0001t0001g0369 a0001c0001t0001g0375 a0001c0001t0002g0191 a0001c0001t0002g0204 a0001c0001t0002g0208	8	404	0.0198	26	c.33+ others(43): Show c.33+33431_33+33432insATATATATTTTTTTTTTTTTTTTTTT	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NINJ2_chr12_559296_668445	629896	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0206 a0001c0001t0002g0206	1	404	0.0025	26	c.33+ others(43): Show c.33+33431_33+33432insATATATATATTTTTTTTTTTTTTTTT	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NINJ2_chr12_559296_668445	629896	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG04184.hp1 homoSapiens_chm13v2.hp1 HG04184.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0231 a0001c0001t0001g0236 a0001c0001t0001g0231 a0001c0001t0001g0236	2	404	0.0050	26	c.33+ others(43): Show c.33+33431_33+33432insATATATATATATTTTTTTTTTTTTTT	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NINJ2_chr12_559296_668445	629896	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01168.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0174 a0001c0001t0001g0174	1	404	0.0025	26	c.33+ others(43): Show c.33+33431_33+33432insATATATATATATATTTTTTTTTTTTT	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NINJ2_chr12_559296_668445	629896	A A	AAAAAAAA others(19): Show AAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0252 a0001c0001t0002g0252	1	404	0.0025	26	c.33+ others(43): Show c.33+33431_33+33432insATATATATATATATATTTTTTTTTTT	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NINJ2_chr12_559296_668445	634265	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02155.hp2 HG03942.hp2 NA18997.hp2 others(1): Show HG02155.hp2 HG03942.hp2 NA18997.hp2 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0030 a0001c0001t0001g0032 a0001c0001t0001g0037 others(1): Show a0001c0001t0001g0030 a0001c0001t0001g0032 a0001c0001t0001g0037 a0001c0001t0002g0374	4	404	0.0099	26	c.33+ others(43): Show c.33+29062_33+29063insAAAAAAAAAAAAAAAAAAAAAAAAAA	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NINJ2_chr12_559296_668445	649531	G G	GTATATAT others(19): Show GTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG02055.hp1 HG02630.hp2 others(3): Show HG00323.hp2 HG02055.hp1 HG02630.hp2 NA18944.hp1 NA19057.hp2 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0295 a0001c0001t0001g0298 a0001c0001t0001g0302 others(3): Show a0001c0001t0001g0295 a0001c0001t0001g0298 a0001c0001t0001g0302 a0001c0001t0001g0313 a0001c0001t0001g0395 a0001c0001t0001g0399	6	404	0.0149	26	c.33+ others(43): Show c.33+13796_33+13797insTATATATATATATATATATATATATA	NINJ2	ENSG00000171840.13	transcript	ENST00000305108.10	protein_coding	1/3			chr12	TogoVar
NIPA1_chr15_22781644_22834789	22788919	T T	TAAAAAAA others(19): Show TAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0006 a0002c0004t0006	a0002c0004t0006g0096 a0002c0004t0006g0096	1	400	0.0025	26	c.178 others(43): Show c.178+2103_178+2104insAAAAAAAAAAAAAAAAAAAAAAAAAA	NIPA1	ENSG00000170113.16	transcript	ENST00000337435.9	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr15	TogoVar
NIPA1_chr15_22781644_22834789	22807782	T T	TTGTGTGT others(19): Show TTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG02080.hp2 HG02451.hp2 others(11): Show HG00741.hp2 HG02080.hp2 HG02451.hp2 HG02559.hp1 HG02809.hp2 HG02818.hp1 HG03017.hp1 HG03139.hp1 HG04115.hp2 NA18906.hp1 NA18945.hp2 NA18951.hp1 NA18965.hp1 NA18994.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0002c0004 a0001c0002 a0002c0003 a0002c0004	a0001c0002t0001 a0002c0003t0003 a0002c0003t0004 others(4): Show a0001c0002t0001 a0002c0003t0003 a0002c0003t0004 a0002c0003t0005 a0002c0003t0006 a0002c0004t0001 a0002c0004t0007	a0001c0002t0001g0106 a0002c0003t0003g0230 a0002c0003t0003g0235 others(11): Show a0001c0002t0001g0106 a0002c0003t0003g0230 a0002c0003t0003g0235 a0002c0003t0003g0253 a0002c0003t0003g0256 a0002c0003t0004g0005 a0002c0003t0004g0196 a0002c0003t0005g0181 a0002c0003t0006g0201 a0002c0004t0001g0245 a0002c0004t0001g0249 a0002c0004t0007g0210 a0002c0004t0007g0211 a0002c0004t0007g0265	14	400	0.0350	26	c.179 others(43): Show c.179-2945_179-2944insTGTGTGTGTGTGTGTGTGTGTGTGTG	NIPA1	ENSG00000170113.16	transcript	ENST00000337435.9	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr15	TogoVar
NIPAL2_chr8_98184826_98299235	98280736	C C	CTATATAT others(19): Show CTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0142 a0001c0001t0003g0142	1	332	0.0030	26	c.135 others(45): Show c.135+13241_135+13266dupTATATATATATATATATATATATATA	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL2_chr8_98184826_98299235	98280761	T T	TATATAGA others(19): Show TATATAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01169.hp1 NA20300.hp1 HG01169.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0001 a0001c0001t0004 a0001c0002t0001	a0001c0001t0004g0276 a0001c0002t0001g0328 a0001c0001t0004g0276 a0001c0002t0001g0328	2	332	0.0060	26	c.135 others(45): Show c.135+13241_135+13242insCTCTCTCTCTCTCTCTCTCTCTATAT	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL2_chr8_98184826_98299235	98280761	T T	TATATATA others(19): Show TATATATAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG00673.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0169 a0001c0001t0004g0169	1	332	0.0030	26	c.135 others(45): Show c.135+13241_135+13242insCTCTCTCTCTCTCTCTCTCTATATAT	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL2_chr8_98184826_98299235	98280761	T T	TATATATA others(19): Show TATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG01993.hp1 HG02723.hp2 others(1): Show HG01943.hp2 HG01993.hp1 HG02723.hp2 NA18990.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0001c0002 a0002c0003	a0001c0002t0001 a0001c0002t0021 a0002c0003t0002 a0001c0002t0001 a0001c0002t0021 a0002c0003t0002	a0001c0002t0001g0326 a0001c0002t0001g0327 a0001c0002t0021g0086 others(1): Show a0001c0002t0001g0326 a0001c0002t0001g0327 a0001c0002t0021g0086 a0002c0003t0002g0187	4	332	0.0121	26	c.135 others(45): Show c.135+13241_135+13242insCTCTCTCTCTCTCTCTATATATATAT	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL2_chr8_98184826_98299235	98280761	T T	TATATATA others(19): Show TATATATATATATAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG03942.hp2 NA19043.hp2 HG03669.hp1 HG03942.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0006 a0001c0002t0001 a0001c0001t0003 a0001c0001t0006 a0001c0002t0001	a0001c0001t0003g0237 a0001c0001t0006g0228 a0001c0002t0001g0069 a0001c0001t0003g0237 a0001c0001t0006g0228 a0001c0002t0001g0069	3	332	0.0090	26	c.135 others(45): Show c.135+13241_135+13242insCTCTCTCTCTCTCTATATATATATAT	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL2_chr8_98184826_98299235	98280761	T T	TATATATA others(19): Show TATATATATATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02895.hp1 HG02897.hp2 others(1): Show HG01243.hp2 HG02895.hp1 HG02897.hp2 HG04199.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0005 a0001c0002t0001 a0001c0002t0005	a0001c0002t0001g0250 a0001c0002t0005g0082 a0001c0002t0005g0083 others(1): Show a0001c0002t0001g0250 a0001c0002t0005g0082 a0001c0002t0005g0083 a0001c0002t0005g0084	4	332	0.0121	26	c.135 others(45): Show c.135+13241_135+13242insCTCTCTCTCTCTATATATATATATAT	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL2_chr8_98184826_98299235	98280761	T T	TATATATA others(19): Show TATATATATATATATATAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01433.hp2 HG02155.hp1 others(2): Show HG01106.hp1 HG01433.hp2 HG02155.hp1 HG03516.hp1 NA19064.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0004c0008 a0001c0001 a0001c0002 a0004c0008	a0001c0001t0003 a0001c0002t0001 a0004c0008t0004 a0001c0001t0003 a0001c0002t0001 a0004c0008t0004	a0001c0001t0003g0227 a0001c0001t0003g0235 a0001c0001t0003g0302 others(2): Show a0001c0001t0003g0227 a0001c0001t0003g0235 a0001c0001t0003g0302 a0001c0002t0001g0183 a0004c0008t0004g0262	5	332	0.0151	26	c.135 others(45): Show c.135+13241_135+13242insCTCTCTCTCTATATATATATATATAT	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL2_chr8_98184826_98299235	98280761	T T	TATATATA others(19): Show TATATATATATATATATATATAGAGAG	intron_variant intron_variant	MODIFIER	HG00735.hp1 NA18906.hp2 NA19000.hp1 others(1): Show HG00735.hp1 NA18906.hp2 NA19000.hp1 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0173 a0001c0001t0002g0322 a0001c0001t0003g0174 others(1): Show a0001c0001t0002g0173 a0001c0001t0002g0322 a0001c0001t0003g0174 a0001c0001t0003g0175	4	332	0.0121	26	c.135 others(45): Show c.135+13241_135+13242insCTCTCTATATATATATATATATATAT	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL2_chr8_98184826_98299235	98280761	T T	TATATATA others(19): Show TATATATATATATATATATATATAGAG	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG02818.hp2 HG01975.hp1 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0120 a0001c0001t0004g0041 a0001c0001t0003g0120 a0001c0001t0004g0041	2	332	0.0060	26	c.135 others(45): Show c.135+13241_135+13242insCTCTATATATATATATATATATATAT	NIPAL2	ENSG00000104361.10	transcript	ENST00000430223.7	protein_coding	1/10			chr8	TogoVar
NIPAL3_chr1_24410802_24477976	24428258	A A	AAGAGAGA others(19): Show AAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA19066.hp2 NA20752.hp2 NA19066.hp2 NA20752.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0006 a0001c0002t0003 a0001c0002t0006	a0001c0002t0003g0107 a0001c0002t0006g0106 a0001c0002t0003g0107 a0001c0002t0006g0106	2	380	0.0053	26	c.93+ others(41): Show c.93+8638_93+8663dupGAGAGAGAGAGAGAGAGAGAGAGAGA	NIPAL3	ENSG00000001461.17	transcript	ENST00000374399.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
NIPBL_chr5_36871769_37071413	36952053	T T	TGTGTGTG others(19): Show TGTGTGTGTGTGTGTGTGTGCGCGCGC	intron_variant intron_variant	MODIFIER	NA19090.hp1 NA19090.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0121 a0002c0003t0001g0121	1	328	0.0031	26	c.-79 others(43): Show c.-79-1564_-79-1563insTGTGTGTGTGTGTGTGTGCGCGCGCG	NIPBL	ENSG00000164190.19	transcript	ENST00000282516.13	protein_coding	1/46		INFO_REALIGN_3_PRIME	chr5	TogoVar
NIPBL_chr5_36871769_37071413	36952053	T T	TGTGTGTG others(19): Show TGTGTGTGTGTGTGTGTGTGTGCGCGC	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0312 a0002c0003t0001g0312	1	328	0.0031	26	c.-79 others(43): Show c.-79-1564_-79-1563insTGTGTGTGTGTGTGTGTGTGCGCGCG	NIPBL	ENSG00000164190.19	transcript	ENST00000282516.13	protein_coding	1/46		INFO_REALIGN_3_PRIME	chr5	TogoVar
NKAIN1_chr1_31174745_31244887	31232396	C C	CATATATA others(19): Show CATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02135.hp2 HG03834.hp1 NA19076.hp2 HG02135.hp2 HG03834.hp1 NA19076.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0308 a0001c0001t0003g0027 a0001c0001t0003g0033 a0001c0001t0002g0308 a0001c0001t0003g0027 a0001c0001t0003g0033	3	338	0.0089	26	c.54+ others(41): Show c.54+7072_54+7097dupATATATATATATATATATATATATAT	NKAIN1	ENSG00000084628.10	transcript	ENST00000373736.7	protein_coding	1/6			chr1	TogoVar
NKAIN1_chr1_31174745_31244887	31232424	T T	TATATATA others(19): Show TATATATATAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0160 a0001c0001t0002g0160	1	338	0.0030	26	c.54+ others(41): Show c.54+7069_54+7070insCTCTCTCTCTCTCTCTCTATATATAT	NKAIN1	ENSG00000084628.10	transcript	ENST00000373736.7	protein_coding	1/6			chr1	TogoVar
NKAIN1_chr1_31174745_31244887	31232424	T T	TATATATA others(19): Show TATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0158 a0001c0001t0003g0158	1	338	0.0030	26	c.54+ others(41): Show c.54+7069_54+7070insCTCTCTCTCTCTCTCTATATATATAT	NKAIN1	ENSG00000084628.10	transcript	ENST00000373736.7	protein_coding	1/6			chr1	TogoVar
NKAIN1_chr1_31174745_31244887	31232424	T T	TATATATA others(19): Show TATATATATATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02300.hp2 NA20905.hp1 HG02300.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0086 a0001c0001t0003g0126 a0001c0001t0001g0086 a0001c0001t0003g0126	2	338	0.0059	26	c.54+ others(41): Show c.54+7069_54+7070insCTCTCTCTCTCTATATATATATATAT	NKAIN1	ENSG00000084628.10	transcript	ENST00000373736.7	protein_coding	1/6			chr1	TogoVar
NKAIN1_chr1_31174745_31244887	31232424	T T	TATATATA others(19): Show TATATATATATATATATATAGAGAGAG	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19003.hp2 NA19000.hp1 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0069 a0001c0001t0001g0070	2	338	0.0059	26	c.54+ others(41): Show c.54+7069_54+7070insCTCTCTCTATATATATATATATATAT	NKAIN1	ENSG00000084628.10	transcript	ENST00000373736.7	protein_coding	1/6			chr1	TogoVar
NKAIN1_chr1_31174745_31244887	31232424	T T	TATATATA others(19): Show TATATATATATATATATATATATAGAG	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG04204.hp2 NA18979.hp2 others(1): Show HG03017.hp2 HG04204.hp2 NA18979.hp2 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0058 a0001c0001t0001g0112 a0001c0001t0001g0137 others(1): Show a0001c0001t0001g0058 a0001c0001t0001g0112 a0001c0001t0001g0137 a0001c0001t0001g0245	4	338	0.0118	26	c.54+ others(41): Show c.54+7069_54+7070insCTCTATATATATATATATATATATAT	NKAIN1	ENSG00000084628.10	transcript	ENST00000373736.7	protein_coding	1/6			chr1	TogoVar
NKAIN1_chr1_31174745_31244887	31232424	T T	TATATATA others(19): Show TATATATATATATATATATATATATAG	intron_variant intron_variant	MODIFIER	HG03927.hp2 NA19083.hp2 HG03927.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0053 a0001c0001t0003g0230 a0001c0001t0002g0053 a0001c0001t0003g0230	2	338	0.0059	26	c.54+ others(41): Show c.54+7069_54+7070insCTATATATATATATATATATATATAT	NKAIN1	ENSG00000084628.10	transcript	ENST00000373736.7	protein_coding	1/6			chr1	TogoVar
NKAIN1_chr1_31174745_31244887	31235316	T T	TTAATATG others(19): Show TTAATATGTTACATATTAACATGTTAC	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00609.hp1 HG02071.hp2 others(22): Show HG00408.hp1 HG00609.hp1 HG02071.hp2 HG02080.hp1 HG02135.hp2 HG02523.hp1 NA18952.hp2 NA18957.hp1 NA18962.hp2 NA18965.hp1 NA18968.hp1 NA18984.hp2 NA18986.hp2 NA18993.hp2 NA18994.hp2 NA18998.hp1 NA19000.hp2 NA19003.hp1 NA19007.hp2 NA19009.hp2 NA19010.hp2 NA19057.hp2 NA19062.hp2 NA19070.hp1 NA19076.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0002c0004t0013	a0001c0001t0001g0311 a0001c0001t0001g0328 a0001c0001t0002g0308 others(22): Show a0001c0001t0001g0311 a0001c0001t0001g0328 a0001c0001t0002g0308 a0001c0001t0002g0317 a0001c0001t0002g0319 a0001c0001t0002g0320 a0001c0001t0002g0323 a0001c0001t0002g0324 a0001c0001t0002g0325 a0001c0001t0002g0326 a0001c0001t0003g0306 a0001c0001t0003g0307 a0001c0001t0003g0309 a0001c0001t0003g0310 a0001c0001t0003g0312 a0001c0001t0003g0313 a0001c0001t0003g0314 a0001c0001t0003g0315 a0001c0001t0003g0316 a0001c0001t0003g0318 a0001c0001t0003g0321 a0001c0001t0003g0322 a0001c0001t0003g0327 a0001c0001t0003g0333 a0002c0004t0013g0205	25	338	0.0740	26	c.54+ others(41): Show c.54+4177_54+4178insGTAACATGTTAATATGTAACATATTA	NKAIN1	ENSG00000084628.10	transcript	ENST00000373736.7	protein_coding	1/6			chr1	TogoVar
NKAIN2_chr6_123798865_124830640	123911797	A A	ATATATAT others(19): Show ATATATATGTATATATATATATATGTG	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	66	0.0152	26	c.54+ others(45): Show c.54+107546_54+107547insATATGTATATATATATATATGTGTAT	NKAIN2	ENSG00000188580.16	transcript	ENST00000368417.6	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr6	TogoVar
NKAIN2_chr6_123798865_124830640	123911805	A A	ATATATAT others(19): Show ATATATATATGTATATATATATATATG	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0021 a0001c0001t0019g0021	1	66	0.0152	26	c.54+ others(45): Show c.54+107559_54+107560insTGTATATATATATATATGTATATATA	NKAIN2	ENSG00000188580.16	transcript	ENST00000368417.6	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr6	TogoVar
NKAIN2_chr6_123798865_124830640	124138641	T T	TTATTATT others(19): Show TTATTATTAATAATTATGTTATATTAA	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0017 a0001c0001t0006g0017	1	66	0.0152	26	c.55- others(45): Show c.55-144339_55-144338insATATTATTAATAATTATGTTATATTA	NKAIN2	ENSG00000188580.16	transcript	ENST00000368417.6	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr6	TogoVar
NKAIN2_chr6_123798865_124830640	124398252	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02717.hp2 NA21309.hp2 HG02717.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0002 a0001c0001t0002g0062 a0001c0001t0001g0002 a0001c0001t0002g0062	2	66	0.0303	26	c.273 others(45): Show c.273+42910_273+42935dupAAAAAAAAAAAAAAAAAAAAAAAAAA	NKAIN2	ENSG00000188580.16	transcript	ENST00000368417.6	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr6	TogoVar
NKAIN2_chr6_123798865_124830640	124687591	A A	ATATATAT others(19): Show ATATATATTATGTATATATATTTATAT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp2 HG02451.hp2 others(2): Show HG01109.hp1 HG02109.hp2 HG02451.hp2 HG03209.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0005 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0005 a0001c0002t0013 a0001c0002t0018	a0001c0001t0001g0014 a0001c0001t0002g0055 a0001c0002t0005g0020 others(2): Show a0001c0001t0001g0014 a0001c0001t0002g0055 a0001c0002t0005g0020 a0001c0002t0013g0058 a0001c0002t0018g0007	5	66	0.0758	26	c.474 others(45): Show c.474+29206_474+29231dupTATATATTATGTATATATATTTATAT	NKAIN2	ENSG00000188580.16	transcript	ENST00000368417.6	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr6	TogoVar
NKAIN3_chr8_62243854_62989904	62401013	T T	TTCTCTCT others(19): Show TTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0064 a0001c0001t0004g0064	1	144	0.0069	26	c.54+ others(45): Show c.54+151892_54+151893insTCTCTCTCTCTCTCTCTCTCTCTCTC	NKAIN3	ENSG00000185942.13	transcript	ENST00000623646.3	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
NKAIN3_chr8_62243854_62989904	62454301	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0053 a0002c0003t0053	a0002c0003t0053g0033 a0002c0003t0053g0033	1	144	0.0069	26	c.55- others(45): Show c.55-125216_55-125215insAAAAAAAAAAAAAAAAAAAAAAAAAA	NKAIN3	ENSG00000185942.13	transcript	ENST00000623646.3	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
NKAIN3_chr8_62243854_62989904	62729023	C C	CAAACCAA others(19): Show CAAACCAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0023 a0001c0002t0023	a0001c0002t0023g0114 a0001c0002t0023g0114	1	144	0.0069	26	c.274 others(45): Show c.274-17909_274-17908insAAACCAAAAAAAAAAAAAAAAAAAAA	NKAIN3	ENSG00000185942.13	transcript	ENST00000623646.3	protein_coding	3/6			chr8	TogoVar
NKAIN3_chr8_62243854_62989904	62729043	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAACAAACAAAC	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0069 a0001c0001t0055g0069	1	144	0.0069	26	c.274 others(45): Show c.274-17880_274-17879insAAAAAAAACAAACAAACAAAAAAAAA	NKAIN3	ENSG00000185942.13	transcript	ENST00000623646.3	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
NKAIN3_chr8_62243854_62989904	62845285	T T	TTATATAT others(19): Show TTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19004.hp1 NA20300.hp2 NA19004.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0099 a0001c0001t0011 a0001c0001t0099	a0001c0001t0011g0016 a0001c0001t0099g0083 a0001c0001t0011g0016 a0001c0001t0099g0083	2	144	0.0139	26	c.472 others(45): Show c.472-73165_472-73140dupTATATATATATATATATATATATATA	NKAIN3	ENSG00000185942.13	transcript	ENST00000623646.3	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
NKAIN3_chr8_62243854_62989904	62859508	T T	TAAAAAAA others(19): Show TAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02630.hp2 HG03239.hp2 HG02258.hp1 HG02630.hp2 HG03239.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0059 a0001c0002t0001 a0001c0002t0002 a0001c0002t0059	a0001c0002t0001g0073 a0001c0002t0002g0126 a0001c0002t0059g0023 a0001c0002t0001g0073 a0001c0002t0002g0126 a0001c0002t0059g0023	3	144	0.0208	26	c.472 others(45): Show c.472-58932_472-58931insAAAAAAAAAAAAAAAAAAAAAAAAAA	NKAIN3	ENSG00000185942.13	transcript	ENST00000623646.3	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
NKAIN3_chr8_62243854_62989904	62870214	A A	ATATATCT others(19): Show ATATATCTATATCTATATATAGATATC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02970.hp2 HG03209.hp1 HG02559.hp2 HG02970.hp2 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0004 a0001c0001t0004 a0001c0002t0004	a0001c0001t0004g0042 a0001c0001t0004g0064 a0001c0002t0004g0068 a0001c0001t0004g0042 a0001c0001t0004g0064 a0001c0002t0004g0068	3	144	0.0208	26	c.472 others(45): Show c.472-48234_472-48209dupTCTATATCTATATATAGATATCTATA	NKAIN3	ENSG00000185942.13	transcript	ENST00000623646.3	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
NKAIN3_chr8_62243854_62989904	62942225	C C	CATATATA others(19): Show CATATATATATACACATATATATACAT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp2 HG02145.hp2 others(4): Show HG01109.hp1 HG02109.hp2 HG02145.hp2 HG02895.hp2 HG03139.hp1 NA19043.hp2 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0012 a0001c0001t0020 a0001c0001t0069 others(2): Show a0001c0001t0012 a0001c0001t0020 a0001c0001t0069 a0001c0001t0070 a0002c0003t0083	a0001c0001t0012g0010 a0001c0001t0012g0011 a0001c0001t0020g0070 others(4): Show a0001c0001t0012g0010 a0001c0001t0012g0011 a0001c0001t0020g0070 a0001c0001t0020g0142 a0001c0001t0069g0075 a0001c0001t0070g0143 a0002c0003t0083g0139	7	144	0.0486	26	c.533 others(45): Show c.533-11668_533-11667insTACACATATATATACATATATATATA	NKAIN3	ENSG00000185942.13	transcript	ENST00000623646.3	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
NLGN1_chr3_173392744_174299372	173415904	T T	TATATATA others(19): Show TATATATATATATATATAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0002 a0001c0001t0025g0002	1	44	0.0227	26	c.-32 others(47): Show c.-321+17842_-321+17843insTATATATATATATATAGAGAGAGA GA	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173539679	C C	CATACATA others(19): Show CATACATATATGTACATATGCACATAT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG03041.hp1 NA19240.hp1 HG02723.hp2 HG03041.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0017 a0001c0001t0030 a0001c0002t0032 a0001c0001t0017 a0001c0001t0030 a0001c0002t0032	a0001c0001t0017g0023 a0001c0001t0030g0040 a0001c0002t0032g0013 a0001c0001t0017g0023 a0001c0001t0030g0040 a0001c0002t0032g0013	3	44	0.0682	26	c.-32 others(47): Show c.-320-64555_-320-64530dupGCACATATATACATATATGTACAT AT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173539741	T T	TGTGCATA others(19): Show TGTGCATATGCACATATATACATATAG	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA18906.hp2 NA19240.hp2 HG03098.hp1 NA18906.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0014 a0001c0001t0020 a0001c0002t0010 a0001c0001t0014 a0001c0001t0020 a0001c0002t0010	a0001c0001t0014g0030 a0001c0001t0020g0034 a0001c0002t0010g0010 a0001c0001t0014g0030 a0001c0001t0020g0034 a0001c0002t0010g0010	3	44	0.0682	26	c.-32 others(47): Show c.-320-64536_-320-64535insGCATATGCACATATATACATATAG GT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	173600592	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0029 a0001c0001t0028g0029	1	44	0.0227	26	c.-32 others(45): Show c.-320-3678_-320-3677insTTTTTTTTTTTTTTTTTTTTTTTTTT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174105676	A A	AATATCTA others(19): Show AATATCTATATGTAGATATAGATATCT	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02572.hp2 HG01192.hp1 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0012 a0001c0001t0003 a0001c0002t0012	a0001c0001t0003g0026 a0001c0002t0012g0015 a0001c0001t0003g0026 a0001c0002t0012g0015	2	44	0.0455	26	c.707 others(47): Show c.707-169628_707-169603dupGTAGATATAGATATCTATATCTAT AT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
NLGN1_chr3_173392744_174299372	174289957	A A	ATATATAT others(19): Show ATATATATATGTATGTATATATATGTG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02109.hp1 HG02723.hp2 HG02109.hp1 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0039 a0001c0001t0030 a0001c0001t0039	a0001c0001t0030g0040 a0001c0001t0039g0006 a0001c0001t0030g0040 a0001c0001t0039g0006	2	44	0.0455	26	c.86 others(37): Show c.8663_*8664insGTATGTATATATATGTGTATATATAT	NLGN1	ENSG00000169760.18	transcript	ENST00000695368.1	protein_coding	7/7	8664	INFO_REALIGN_3_PRIME	chr3	TogoVar

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