Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ARHGAP42_chr11_100682288_100998941	100980559	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18945.hp2 NA18945.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0217 a0001c0001t0001g0217	1	286	0.0035	26	c.245 others(45): Show c.2456+1515_2456+1540dupTTTTTTTTTTTTTTTTTTTTTTTTTT	ARHGAP42	ENSG00000165895.19	transcript	ENST00000298815.13	protein_coding	22/23		INFO_REALIGN_3_PRIME	chr11	TogoVar
ARHGAP44_chr17_12784498_12996643	12903126	G G	GAGAGAGA others(19): Show GAGAGAGAGAGAGAGAGAGAGAGGAGA	intron_variant intron_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0230 a0001c0001t0004g0230	1	230	0.0044	26	c.199 others(43): Show c.199-5771_199-5770insAGAGAGAGAGAGAGAGAGAGAGGAGA	ARHGAP44	ENSG00000006740.18	transcript	ENST00000379672.10	protein_coding	3/20			chr17	TogoVar
ARHGAP44_chr17_12784498_12996643	12948723	T T	TACACACA others(19): Show TACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01258.hp2 HG02258.hp1 HG02622.hp1 others(1): Show HG01258.hp2 HG02258.hp1 HG02622.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0001 a0001c0001t0009 a0001c0006t0001 a0001c0001t0001 a0001c0001t0009 a0001c0006t0001	a0001c0001t0001g0193 a0001c0001t0009g0096 a0001c0001t0009g0151 others(1): Show a0001c0001t0001g0193 a0001c0001t0009g0096 a0001c0001t0009g0151 a0001c0006t0001g0184	4	230	0.0174	26	c.862 others(41): Show c.862-414_862-389dupACACACACACACACACACACACACAC	ARHGAP44	ENSG00000006740.18	transcript	ENST00000379672.10	protein_coding	10/20		INFO_REALIGN_3_PRIME	chr17	TogoVar
ARHGAP44_chr17_12784498_12996643	12978035	T T	TAAAAAAA others(19): Show TAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01074.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0063 a0001c0002t0003g0063	1	230	0.0044	26	c.176 others(45): Show c.1764-2023_1764-2022insAAAAAAAAAAAAAAAAAAAAAAAAAA	ARHGAP44	ENSG00000006740.18	transcript	ENST00000379672.10	protein_coding	18/20			chr17	TogoVar
ARHGAP6_chrX_11132544_11670920	11174569	C C	CCTTTCTT others(19): Show CCTTTCTTTCTTTCTTTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	NA19082.hp1 NA19082.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0016 a0002c0002t0016	a0002c0002t0016g0007 a0002c0002t0016g0007	1	144	0.0069	26	c.162 others(45): Show c.1629+3530_1629+3531insAAAGAAAGAAAAAGAAAGAAAGAAAG	ARHGAP6	ENSG00000047648.23	transcript	ENST00000337414.9	protein_coding	8/12			chrX	TogoVar
ARHGAP6_chrX_11132544_11670920	11174573	C C	CCTTTCTT others(19): Show CCTTTCTTTCTTTCTTTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG03492.hp1 HG03492.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0034 a0002c0002t0003g0034	1	144	0.0069	26	c.162 others(45): Show c.1629+3526_1629+3527insAAAGAAAGAAAAAGAAAGAAAGAAAG	ARHGAP6	ENSG00000047648.23	transcript	ENST00000337414.9	protein_coding	8/12			chrX	TogoVar
ARHGAP6_chrX_11132544_11670920	11344710	G G	GAAAAGAA others(19): Show GAAAAGAAAAGAAAAGAAAAGAAAAGA	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0021 a0001c0007t0001g0021	1	144	0.0069	26	c.589 others(45): Show c.589-90004_589-90003insTCTTTTCTTTTCTTTTCTTTTCTTTT	ARHGAP6	ENSG00000047648.23	transcript	ENST00000337414.9	protein_coding	1/12			chrX	TogoVar
ARHGAP6_chrX_11132544_11670920	11411183	T T	TTATATAT others(19): Show TTATATATTTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	144	0.0069	26	c.589 others(47): Show c.589-156477_589-156476insTATATATATATATATATAAATATA TA	ARHGAP6	ENSG00000047648.23	transcript	ENST00000337414.9	protein_coding	1/12			chrX	TogoVar
ARHGAP8_chr22_44747575_44867784	44801076	G G	GGGGGCCG others(19): Show GGGGGCCGCCTCTCCCCGCAGCTGTGT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02257.hp2 HG03516.hp2 HG02055.hp1 HG02257.hp2 HG03516.hp2	a0001 a0012 a0001 a0012	a0001c0004 a0001c0007 a0012c0056 a0001c0004 a0001c0007 a0012c0056	a0001c0004t0010 a0001c0007t0001 a0012c0056t0005 a0001c0004t0010 a0001c0007t0001 a0012c0056t0005	a0001c0004t0010g0302 a0001c0007t0001g0382 a0012c0056t0005g0323 a0001c0004t0010g0302 a0001c0007t0001g0382 a0012c0056t0005g0323	3	390	0.0077	26	c.80- others(41): Show c.80-1001_80-1000insGGGGCCGCCTCTCCCCGCAGCTGTGT	ARHGAP8	ENSG00000241484.10	transcript	ENST00000356099.11	protein_coding	2/11			chr22	TogoVar
ARHGAP9_chr12_57467269_57484866	57483097	T T	TCAAAAAA others(19): Show TCAAAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0075	1	406	0.0025	26	c.-33 others(37): Show c.-3387_-3386insTTTTTTTTTTTTTTTTTTTTTTTTTG	ARHGAP9	ENSG00000123329.20	transcript	ENST00000393791.8	protein_coding		3232		chr12	TogoVar
ARHGEF11_chr1_156929840_157050742	156930044	C C	CTCTTTCT others(19): Show CTCTTTCTTTCTTTCTTTCTTTCTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp1 HG03139.hp2 HG02572.hp1 HG03139.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0021 a0002c0004t0021	a0002c0004t0021g0174 a0002c0004t0021g0175 a0002c0004t0021g0174 a0002c0004t0021g0175	2	362	0.0055	26	c.59 others(37): Show c.5955_*5956insAAAAGAAAGAAAGAAAGAAAGAAAGA	ARHGEF11	ENSG00000132694.19	transcript	ENST00000368194.8	protein_coding		4795		chr1	TogoVar
ARHGEF11_chr1_156929840_157050742	156930060	T T	TTCTTTCT others(19): Show TTCTTTCTTTTTCTTTCTTTCTTTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp1 HG00621.hp1 HG01070.hp1 others(27): Show HG00558.hp1 HG00621.hp1 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01256.hp2 HG01258.hp2 HG01952.hp2 HG02132.hp2 HG02135.hp2 HG02148.hp2 HG02698.hp2 HG03927.hp1 HG04115.hp2 HG04228.hp1 NA18747.hp1 NA18944.hp2 NA18951.hp1 NA18952.hp1 NA18952.hp2 NA18968.hp1 NA18973.hp1 NA18977.hp2 NA18988.hp2 NA18993.hp1 NA19004.hp2 NA19057.hp2 NA19060.hp2 NA19062.hp2 NA19086.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0016 a0002c0002t0017 a0002c0002t0002 a0002c0002t0016 a0002c0002t0017	a0002c0002t0002g0001 a0002c0002t0002g0005 a0002c0002t0002g0040 others(26): Show a0002c0002t0002g0001 a0002c0002t0002g0005 a0002c0002t0002g0040 a0002c0002t0002g0043 a0002c0002t0002g0046 a0002c0002t0002g0051 a0002c0002t0002g0055 a0002c0002t0002g0056 a0002c0002t0002g0057 a0002c0002t0002g0064 a0002c0002t0002g0067 a0002c0002t0002g0068 a0002c0002t0002g0070 a0002c0002t0002g0082 a0002c0002t0002g0083 a0002c0002t0002g0084 a0002c0002t0002g0089 a0002c0002t0002g0090 a0002c0002t0002g0092 a0002c0002t0002g0098 a0002c0002t0002g0099 a0002c0002t0002g0100 a0002c0002t0002g0101 a0002c0002t0016g0235 a0002c0002t0016g0256 a0002c0002t0016g0257 a0002c0002t0017g0045 a0002c0002t0017g0091 a0002c0002t0017g0093	30	362	0.0829	26	c.59 others(37): Show c.5939_*5940insGAAAAAGAAAGAAAGAAAAAGAAAGA	ARHGEF11	ENSG00000132694.19	transcript	ENST00000368194.8	protein_coding		4779		chr1	TogoVar
ARHGEF11_chr1_156929840_157050742	156930060	T T	TTCTTTTT others(19): Show TTCTTTTTCTTTCTTTCTTTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02735.hp2 NA18941.hp1 NA18949.hp1 others(3): Show HG02735.hp2 NA18941.hp1 NA18949.hp1 NA18956.hp2 NA18964.hp1 NA19080.hp1	a0002 a0002	a0002c0002 a0002c0008 a0002c0002 a0002c0008	a0002c0002t0002 a0002c0008t0002 a0002c0002t0002 a0002c0008t0002	a0002c0002t0002g0041 a0002c0002t0002g0058 a0002c0002t0002g0060 others(3): Show a0002c0002t0002g0041 a0002c0002t0002g0058 a0002c0002t0002g0060 a0002c0002t0002g0061 a0002c0002t0002g0085 a0002c0008t0002g0063	6	362	0.0166	26	c.59 others(37): Show c.5939_*5940insGAAAGAAAAAGAAAGAAAGAAAAAGA	ARHGEF11	ENSG00000132694.19	transcript	ENST00000368194.8	protein_coding		4779		chr1	TogoVar
ARHGEF11_chr1_156929840_157050742	157013259	T T	TCACACAC others(19): Show TCACACACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03540.hp1 HG03669.hp2 others(3): Show HG03139.hp2 HG03540.hp1 HG03669.hp2 NA18979.hp1 NA18988.hp2 NA19060.hp2	a0002 a0003 a0008 a0002 a0003 a0008	a0002c0002 a0002c0004 a0003c0003 others(1): Show a0002c0002 a0002c0004 a0003c0003 a0008c0013	a0002c0002t0016 a0002c0004t0013 a0002c0004t0021 others(2): Show a0002c0002t0016 a0002c0004t0013 a0002c0004t0021 a0003c0003t0003 a0008c0013t0007	a0002c0002t0016g0235 a0002c0002t0016g0257 a0002c0004t0013g0189 others(3): Show a0002c0002t0016g0235 a0002c0002t0016g0257 a0002c0004t0013g0189 a0002c0004t0021g0174 a0003c0003t0003g0221 a0008c0013t0007g0144	6	362	0.0166	26	c.33- others(43): Show c.33-27087_33-27086insTGTGTGTGTGTGTGTGTGTGTGTGTG	ARHGEF11	ENSG00000132694.19	transcript	ENST00000368194.8	protein_coding	1/40			chr1	TogoVar
ARHGEF18_chr19_7343937_7477478	7385870	T T	TCTCTCTC others(19): Show TCTCTCTCTCTCTCTCTCTCTCTCTCC	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0009 a0009	a0009c0012 a0009c0012	a0009c0012t0010 a0009c0012t0010	a0009c0012t0010g0003 a0009c0012t0010g0003	1	298	0.0034	26	c.967 others(43): Show c.967+2668_967+2669insTCTCTCTCTCTCTCTCTCTCTCTCCC	ARHGEF18	ENSG00000104880.19	transcript	ENST00000668164.2	protein_coding	10/28		INFO_REALIGN_3_PRIME	chr19	TogoVar
ARHGEF18_chr19_7343937_7477478	7431529	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0021 a0001c0021	a0001c0021t0006 a0001c0021t0006	a0001c0021t0006g0059 a0001c0021t0006g0059	1	298	0.0034	26	c.968 others(43): Show c.968-8811_968-8810insAAAAAAAAAAAAAAAAAAAAAGAAAA	ARHGEF18	ENSG00000104880.19	transcript	ENST00000668164.2	protein_coding	10/28		INFO_REALIGN_3_PRIME	chr19	TogoVar
ARHGEF18_chr19_7343937_7477478	7474754	A A	AGTGTGTG others(19): Show AGTGTGTGTGTGTGTGTGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp1 HG02280.hp1 HG02572.hp1 others(4): Show HG01109.hp1 HG02280.hp1 HG02572.hp1 HG02809.hp1 NA19007.hp1 NA19030.hp1 NA19240.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0002c0006 others(1): Show a0001c0001 a0001c0002 a0002c0006 a0005c0009	a0001c0001t0005 a0001c0001t0034 a0001c0002t0003 others(2): Show a0001c0001t0005 a0001c0001t0034 a0001c0002t0003 a0002c0006t0007 a0005c0009t0009	a0001c0001t0005g0296 a0001c0001t0034g0294 a0001c0002t0003g0158 others(4): Show a0001c0001t0005g0296 a0001c0001t0034g0294 a0001c0002t0003g0158 a0001c0002t0003g0280 a0002c0006t0007g0271 a0002c0006t0007g0273 a0005c0009t0009g0061	7	298	0.0235	26	c.44 others(37): Show c.4456_*4457insGTGTGTGTGTGTGTGTGTGTGTGTGT	ARHGEF18	ENSG00000104880.19	transcript	ENST00000668164.2	protein_coding		2277		chr19	TogoVar
ARHGEF28_chr5_73621196_73946990	73730194	T T	TCTACTCA others(19): Show TCTACTCAACTTATCCTCAAATGTAGA	intron_variant intron_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	188	0.0053	26	c.34- others(43): Show c.34-19642_34-19617dupCTACTCAACTTATCCTCAAATGTAGA	ARHGEF28	ENSG00000214944.10	transcript	ENST00000513042.7	protein_coding	2/35		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGEF37_chr5_149576498_149639968	149598761	T T	TATATATA others(19): Show TATATATATATATATATAGATAGATAG	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0008 a0008	a0008c0009 a0008c0009	a0008c0009t0003 a0008c0009t0003	a0008c0009t0003g0321 a0008c0009t0003g0321	1	394	0.0025	26	c.186 others(41): Show c.186+809_186+810insTATATATATATATAGATAGATAGATA	ARHGEF37	ENSG00000183111.12	transcript	ENST00000333677.7	protein_coding	2/12		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGEF6_chrX_136660550_136785932	136686627	T T	TATATATA others(19): Show TATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA18960.hp1 NA18960.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0236 a0001c0001t0003g0236	1	247	0.0041	26	c.124 others(43): Show c.1246-805_1246-804insGTGTATATATATATATATATATATAT	ARHGEF6	ENSG00000129675.16	transcript	ENST00000250617.7	protein_coding	11/21			chrX	TogoVar
ARHGEF7_chr13_111110310_111310732	111168266	T T	TGCGGTGT others(19): Show TGCGGTGTGCGACAGCTGTGTGAGGCC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01099.hp1 HG01891.hp2 others(4): Show HG00140.hp1 HG01099.hp1 HG01891.hp2 HG01928.hp2 HG02109.hp1 HG02145.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0023 a0001c0001t0003 a0001c0001t0023	a0001c0001t0003g0107 a0001c0001t0003g0136 a0001c0001t0003g0178 others(4): Show a0001c0001t0003g0107 a0001c0001t0003g0136 a0001c0001t0003g0178 a0001c0001t0003g0215 a0001c0001t0003g0216 a0001c0001t0003g0262 a0001c0001t0023g0036	7	274	0.0256	26	c.252 others(45): Show c.252+14276_252+14301dupGCGGTGTGCGACAGCTGTGTGAGGCC	ARHGEF7	ENSG00000102606.20	transcript	ENST00000646102.2	protein_coding	2/21		INFO_REALIGN_3_PRIME	chr13	TogoVar
ARHGEF9_chrX_63629967_63790214	63666453	T T	TACACACA others(19): Show TACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0089	1	168	0.0060	26	c.946 others(41): Show c.946-462_946-437dupGTGTGTGTGTGTGTGTGTGTGTGTGT	ARHGEF9	ENSG00000131089.17	transcript	ENST00000671741.2	protein_coding	6/9			chrX	TogoVar
ARID1A_chr1_26691015_26787104	26710494	T T	TACACACA others(19): Show TACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0119	1	146	0.0069	26	c.113 others(47): Show c.1137+12963_1137+12988dupACACACACACACACACACACACAC AC	ARID1A	ENSG00000117713.21	transcript	ENST00000324856.13	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
ARID1B_chr6_156772378_157215779	156781975	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0017 a0001c0017	a0001c0017t0020 a0001c0017t0020	a0001c0017t0020g0055 a0001c0017t0020g0055	1	150	0.0067	26	c.179 others(45): Show c.1791+2508_1791+2533dupTTTTTTTTTTTTTTTTTTTTTTTTTT	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	156813033	T T	TATATATA others(19): Show TATATATACACATACGTATGTATATAC	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0106 a0001c0001t0001g0106	1	150	0.0067	26	c.179 others(47): Show c.1792-16187_1792-16186insCACATACGTATGTATATACATATA TA	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	156893045	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0016 a0001c0002t0003g0016	1	150	0.0067	26	c.198 others(45): Show c.1987-8316_1987-8315insTTTTTTTTTTTTTTTTTTTTTTTTTT	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	156905250	G G	GCACACAC others(19): Show GCACACACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02074.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0040 a0001c0002t0001g0040	1	150	0.0067	26	c.213 others(45): Show c.2136+3732_2136+3757dupCACACACACACACACACACACACACA	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	3/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	156945233	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02027.hp2	a0001 a0001	a0001c0018 a0001c0018	a0001c0018t0001 a0001c0018t0001	a0001c0018t0001g0131 a0001c0018t0001g0131	1	150	0.0067	26	c.224 others(45): Show c.2247+9667_2247+9692dupTTTTTTTTTTTTTTTTTTTTTTTTTT	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	157039322	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02895.hp1 homoSapiens_chm13v2.hp1 HG02895.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0070 a0001c0002t0001g0092 a0001c0001t0001g0070 a0001c0002t0001g0092	2	150	0.0133	26	c.224 others(47): Show c.2248-45321_2248-45320insTTTTTTTTTTTTTTTTTTTTTTTT TT	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID3A_chr19_921035_980939	973104	A A	ATTTTTTT others(19): Show ATTTTTTTTTTTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02145.hp2 NA18964.hp2 NA18990.hp2 others(2): Show HG02145.hp2 NA18964.hp2 NA18990.hp2 NA18999.hp2 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 a0001c0001 a0001c0003 a0001c0006	a0001c0001t0147 a0001c0001t0149 a0001c0001t0205 others(2): Show a0001c0001t0147 a0001c0001t0149 a0001c0001t0205 a0001c0003t0220 a0001c0006t0113	a0001c0001t0147g0192 a0001c0001t0149g0140 a0001c0001t0205g0099 others(2): Show a0001c0001t0147g0192 a0001c0001t0149g0140 a0001c0001t0205g0099 a0001c0003t0220g0350 a0001c0006t0113g0281	5	364	0.0137	26	c.10 others(37): Show c.1060_*1061insTTTTTTTTTTTTTTTTTTTTTTTTTT	ARID3A	ENSG00000116017.11	transcript	ENST00000263620.8	protein_coding	9/9	1061	INFO_REALIGN_3_PRIME	chr19	TogoVar
ARID3B_chr15_74536220_74603131	74560031	T T	TAAAAAAA others(19): Show TAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG04199.hp1 NA18957.hp2 NA19009.hp1 others(2): Show HG04199.hp1 NA18957.hp2 NA19009.hp1 NA19054.hp1 NA19087.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0185 a0001c0002t0001g0186 a0001c0002t0001g0213 others(2): Show a0001c0002t0001g0185 a0001c0002t0001g0186 a0001c0002t0001g0213 a0001c0002t0001g0214 a0001c0002t0001g0270	5	338	0.0148	26	c.553 others(45): Show c.553-12821_553-12820insAAAAAAAAAAAAAAAAAAAAAAAAAA	ARID3B	ENSG00000179361.18	transcript	ENST00000346246.10	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr15	TogoVar
ARID4A_chr14_58293555_58378876	58337246	T T	TTATATAT others(19): Show TTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01081.hp2 HG01169.hp1 others(14): Show HG00438.hp1 HG01081.hp2 HG01169.hp1 HG01891.hp2 HG01952.hp1 HG01975.hp2 HG01993.hp1 HG01993.hp2 HG02056.hp1 HG02129.hp2 HG02602.hp1 HG02922.hp2 HG03225.hp1 HG06807.hp2 NA18947.hp1 NA18992.hp1 NA19070.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0003t0002 a0002c0002t0006 a0001c0001t0001 a0001c0003t0002 a0002c0002t0006	a0001c0001t0001g0020 a0001c0001t0001g0040 a0001c0001t0001g0052 others(14): Show a0001c0001t0001g0020 a0001c0001t0001g0040 a0001c0001t0001g0052 a0001c0001t0001g0056 a0001c0001t0001g0062 a0001c0001t0001g0066 a0001c0001t0001g0071 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0089 a0001c0001t0001g0108 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0003t0002g0293 a0002c0002t0006g0284	17	294	0.0578	26	c.906 others(43): Show c.906+7099_906+7100insTATATATATATATATATATATATATA	ARID4A	ENSG00000032219.19	transcript	ENST00000355431.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr14	TogoVar
ARID4A_chr14_58293555_58378876	58356699	A A	ATTTTTTT others(19): Show ATTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0170 a0001c0001t0001g0170	1	294	0.0034	26	c.185 others(45): Show c.1854-2412_1854-2411insTTTTTTTTTTTTTTTTTTTTTTTTTT	ARID4A	ENSG00000032219.19	transcript	ENST00000355431.8	protein_coding	17/23		INFO_REALIGN_3_PRIME	chr14	TogoVar
ARID4B_chr1_235161902_235333179	235223382	T T	TATATACA others(19): Show TATATACACGTATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG03704.hp2 HG04184.hp1 others(5): Show HG02004.hp2 HG03704.hp2 HG04184.hp1 NA18946.hp1 NA18973.hp2 NA18982.hp2 NA18994.hp2 NA19074.hp2	a0001 a0008 a0001 a0008	a0001c0002 a0008c0017 a0001c0002 a0008c0017	a0001c0002t0001 a0008c0017t0001 a0001c0002t0001 a0008c0017t0001	a0001c0002t0001g0016 a0001c0002t0001g0023 a0001c0002t0001g0030 others(5): Show a0001c0002t0001g0016 a0001c0002t0001g0023 a0001c0002t0001g0030 a0001c0002t0001g0033 a0001c0002t0001g0034 a0001c0002t0001g0066 a0001c0002t0001g0068 a0008c0017t0001g0135	8	272	0.0294	26	c.971 others(41): Show c.971-123_971-122insGTATATATATATATATACGTGTATAT	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	12/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235223382	T T	TATATATA others(19): Show TATATATACGTATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA18992.hp2 NA18992.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0011 a0001c0002t0001g0011	1	272	0.0037	26	c.971 others(41): Show c.971-123_971-122insGTATATATATATATATACGTATATAT	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	12/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236833	A A	AAAAAAAA others(19): Show AAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18995.hp1 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0199 a0001c0001t0001g0199	1	272	0.0037	26	c.586 others(43): Show c.586-2342_586-2341insATATATATATATATTTTTTTTTTTTT	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236833	A A	AAAAAAAA others(19): Show AAAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18978.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	272	0.0037	26	c.586 others(43): Show c.586-2342_586-2341insATATATATATATATATATATTTTTTT	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236834	A A	ATATATAT others(19): Show ATATATATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG01258.hp2 HG03017.hp1 NA18948.hp1 others(1): Show HG01258.hp2 HG03017.hp1 NA18948.hp1 NA19057.hp1	a0001 a0005 a0001 a0005	a0001c0002 a0005c0013 a0001c0002 a0005c0013	a0001c0002t0001 a0005c0013t0001 a0001c0002t0001 a0005c0013t0001	a0001c0002t0001g0020 a0001c0002t0001g0027 a0001c0002t0001g0050 others(1): Show a0001c0002t0001g0020 a0001c0002t0001g0027 a0001c0002t0001g0050 a0005c0013t0001g0054	4	272	0.0147	26	c.586 others(43): Show c.586-2343_586-2342insCACATATATATATATATATATATATA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236836	A A	ATATATAT others(19): Show ATATATATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01069.hp1 HG02738.hp1 others(1): Show HG00621.hp1 HG01069.hp1 HG02738.hp1 NA19088.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0003c0005 a0001c0002 a0003c0005	a0001c0002t0001 a0003c0005t0001 a0001c0002t0001 a0003c0005t0001	a0001c0002t0001g0044 a0001c0002t0001g0056 a0001c0002t0001g0082 others(1): Show a0001c0002t0001g0044 a0001c0002t0001g0056 a0001c0002t0001g0082 a0003c0005t0001g0052	4	272	0.0147	26	c.586 others(43): Show c.586-2345_586-2344insCACATATATATATATATATATATATA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236836	A A	ATATATAT others(19): Show ATATATATATATATATATATATGTGTG	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01346.hp1 HG01123.hp1 HG01346.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0075 a0001c0002t0001g0076 a0001c0002t0001g0075 a0001c0002t0001g0076	2	272	0.0074	26	c.586 others(43): Show c.586-2345_586-2344insCACACATATATATATATATATATATA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236838	A A	ATATATAT others(19): Show ATATATATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG02148.hp2 NA18973.hp2 HG02148.hp2 NA18973.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0034 a0001c0002t0001g0079 a0001c0002t0001g0034 a0001c0002t0001g0079	2	272	0.0074	26	c.586 others(43): Show c.586-2347_586-2346insCACATATATATATATATATATATATA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236854	A A	ATATATGT others(19): Show ATATATGTGTATATATATATATATGTG	intron_variant intron_variant	MODIFIER	NA18951.hp2 NA18953.hp2 NA18963.hp1 NA18951.hp2 NA18953.hp2 NA18963.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0087 a0001c0002t0001g0088 a0001c0002t0001g0089 a0001c0002t0001g0087 a0001c0002t0001g0088 a0001c0002t0001g0089	3	272	0.0110	26	c.586 others(43): Show c.586-2363_586-2362insCACATATATATATATATACACATATA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236862	A A	ATATATAT others(19): Show ATATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0166 a0001c0001t0001g0166	1	272	0.0037	26	c.586 others(43): Show c.586-2371_586-2370insAATATATATATATATATATATATATA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235236862	A A	ATATATAT others(19): Show ATATATATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	NA18948.hp2 NA18948.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0240 a0001c0001t0001g0240	1	272	0.0037	26	c.586 others(43): Show c.586-2371_586-2370insAAAATATATATATATATATATATATA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	8/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235255219	C C	CTATATAT others(19): Show CTATATATATATATAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01255.hp1 HG02486.hp1 others(3): Show HG01070.hp1 HG01255.hp1 HG02486.hp1 HG02602.hp1 HG02622.hp1 NA19043.hp1	a0002 a0006 a0009 a0002 a0006 a0009	a0002c0003 a0006c0015 a0009c0018 a0002c0003 a0006c0015 a0009c0018	a0002c0003t0001 a0006c0015t0001 a0009c0018t0001 a0002c0003t0001 a0006c0015t0001 a0009c0018t0001	a0002c0003t0001g0100 a0002c0003t0001g0102 a0002c0003t0001g0127 others(3): Show a0002c0003t0001g0100 a0002c0003t0001g0102 a0002c0003t0001g0127 a0002c0003t0001g0128 a0006c0015t0001g0114 a0009c0018t0001g0112	6	272	0.0221	26	c.274 others(41): Show c.274+440_274+441insTCTCTCTCTCTCTATATATATATATA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	5/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235255220	T T	TATATATA others(19): Show TATATATATATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0001 a0001c0010t0001	a0001c0010t0001g0125 a0001c0010t0001g0125	1	272	0.0037	26	c.274 others(41): Show c.274+439_274+440insCTCTCTCTCTCTATATATATATATAT	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	5/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235255263	A A	ATAGATAG others(19): Show ATAGATAGATCTATCTATCTATCTATC	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00621.hp1 HG00639.hp2 others(27): Show HG00140.hp1 HG00621.hp1 HG00639.hp2 HG01123.hp1 HG01257.hp2 HG01258.hp2 HG01346.hp1 HG01516.hp2 HG02004.hp2 HG02040.hp1 HG02083.hp1 HG02148.hp2 HG02602.hp2 HG02735.hp1 HG02738.hp1 HG03490.hp1 HG03654.hp1 NA18944.hp2 NA18952.hp2 NA18956.hp1 NA18961.hp1 NA18971.hp1 NA18975.hp1 NA18982.hp2 NA18999.hp2 NA19056.hp2 NA19074.hp2 NA19081.hp1 NA19085.hp2 NA20905.hp2	a0001 a0003 a0008 a0001 a0003 a0008	a0001c0002 a0003c0005 a0008c0017 a0001c0002 a0003c0005 a0008c0017	a0001c0002t0001 a0003c0005t0001 a0008c0017t0001 a0001c0002t0001 a0003c0005t0001 a0008c0017t0001	a0001c0002t0001g0012 a0001c0002t0001g0017 a0001c0002t0001g0018 others(27): Show a0001c0002t0001g0012 a0001c0002t0001g0017 a0001c0002t0001g0018 a0001c0002t0001g0027 a0001c0002t0001g0028 a0001c0002t0001g0032 a0001c0002t0001g0035 a0001c0002t0001g0036 a0001c0002t0001g0042 a0001c0002t0001g0044 a0001c0002t0001g0045 a0001c0002t0001g0059 a0001c0002t0001g0062 a0001c0002t0001g0064 a0001c0002t0001g0065 a0001c0002t0001g0066 a0001c0002t0001g0067 a0001c0002t0001g0068 a0001c0002t0001g0073 a0001c0002t0001g0074 a0001c0002t0001g0075 a0001c0002t0001g0076 a0001c0002t0001g0077 a0001c0002t0001g0079 a0001c0002t0001g0083 a0001c0002t0001g0084 a0001c0002t0001g0085 a0001c0002t0001g0090 a0003c0005t0001g0052 a0008c0017t0001g0135	30	272	0.1103	26	c.274 others(41): Show c.274+396_274+397insGATAGATAGATAGATAGATCTATCTA	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	5/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235255269	A A	AGATCTAT others(19): Show AGATCTATCTATCTATCTATCTATCTC	intron_variant intron_variant	MODIFIER	NA18951.hp2 NA18953.hp2 NA18963.hp1 NA18951.hp2 NA18953.hp2 NA18963.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0087 a0001c0002t0001g0088 a0001c0002t0001g0089 a0001c0002t0001g0087 a0001c0002t0001g0088 a0001c0002t0001g0089	3	272	0.0110	26	c.274 others(41): Show c.274+390_274+391insGAGATAGATAGATAGATAGATAGATC	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	5/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235296842	G G	GGAGAGAA others(19): Show GGAGAGAAAGAGGGAGGGAGGGAGGGA	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG03453.hp2 HG01106.hp2 HG03453.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0157 a0001c0004t0001g0163 a0001c0004t0001g0157 a0001c0004t0001g0163	2	272	0.0074	26	c.6+3 others(41): Show c.6+30071_6+30072insTCCCTCCCTCCCTCCCTCTTTCTCTC	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	2/23			chr1	TogoVar
ARID5B_chr10_61896699_62101944	61940923	C C	CTATATAT others(19): Show CTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0217 a0001c0001t0005g0217	1	242	0.0041	26	c.502 others(41): Show c.502+533_502+558dupATATATATATATATATATATATATAT	ARID5B	ENSG00000150347.17	transcript	ENST00000279873.12	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr10	TogoVar

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