Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FEZ1_chr11_125437881_125501265	125497846	C C	CGTGGTGG others(19): Show CGTGGTGGCGGGCGCCTGTAGTCCCAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0104 a0002c0002t0001g0104	1	356	0.0028	26	c.-17 others(37): Show c.-1797_-1772dupTTGGGACTACAGGCGCCCGCCACCAC	FEZ1	ENSG00000149557.14	transcript	ENST00000278919.8	protein_coding		1582		chr11	TogoVar
FEZ1_chr11_125437881_125501265	125498211	C C	CCATATAT others(19): Show CCATATATGTCTCATATAGATGTCCCA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp2 HG00735.hp1 HG01069.hp2 others(24): Show HG00609.hp2 HG00735.hp1 HG01069.hp2 HG01071.hp1 HG01109.hp1 HG01109.hp2 HG01256.hp2 HG02015.hp2 HG02027.hp2 HG02145.hp2 HG02723.hp2 HG02886.hp1 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp2 HG02976.hp1 HG03195.hp1 HG03540.hp2 NA18522.hp2 NA18943.hp2 NA18957.hp1 NA18970.hp2 NA18986.hp1 NA19010.hp2 NA19057.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0003 a0001c0001t0005 a0002c0002t0001 others(3): Show a0001c0001t0003 a0001c0001t0005 a0002c0002t0001 a0002c0002t0009 a0002c0002t0015 a0003c0003t0003	a0001c0001t0003g0018 a0001c0001t0003g0022 a0001c0001t0003g0028 others(24): Show a0001c0001t0003g0018 a0001c0001t0003g0022 a0001c0001t0003g0028 a0001c0001t0003g0032 a0001c0001t0003g0038 a0001c0001t0003g0046 a0001c0001t0003g0057 a0001c0001t0003g0059 a0001c0001t0003g0065 a0001c0001t0003g0087 a0001c0001t0005g0319 a0001c0001t0005g0328 a0001c0001t0005g0329 a0001c0001t0005g0330 a0001c0001t0005g0331 a0001c0001t0005g0332 a0002c0002t0001g0105 a0002c0002t0001g0108 a0002c0002t0001g0115 a0002c0002t0001g0116 a0002c0002t0001g0127 a0002c0002t0001g0141 a0002c0002t0001g0143 a0002c0002t0009g0142 a0002c0002t0015g0099 a0003c0003t0003g0054 a0003c0003t0003g0055	27	356	0.0758	26	c.-21 others(37): Show c.-2162_-2137dupTGGGACATCTATATGAGACATATATG	FEZ1	ENSG00000149557.14	transcript	ENST00000278919.8	protein_coding		1947		chr11	TogoVar
FEZ1_chr11_125437881_125501265	125498267	A A	ATATGTCT others(19): Show ATATGTCTCATATAGATGTCCCACATG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0103 a0002c0002t0001g0103	1	356	0.0028	26	c.-22 others(37): Show c.-2218_-2193dupCATGTGGGACATCTATATGAGACATA	FEZ1	ENSG00000149557.14	transcript	ENST00000278919.8	protein_coding		2003		chr11	TogoVar
FEZ1_chr11_125437881_125501265	125498446	C C	CATGTATG others(19): Show CATGTATGTCTCATATAGATGTCCCAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp2 HG01978.hp2 HG02080.hp1 others(8): Show HG00738.hp2 HG01978.hp2 HG02080.hp1 HG02083.hp2 HG02273.hp2 HG04228.hp2 NA18946.hp2 NA18964.hp2 NA18981.hp1 NA19006.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0020 a0001c0001t0003g0021 a0001c0001t0003g0023 others(8): Show a0001c0001t0003g0020 a0001c0001t0003g0021 a0001c0001t0003g0023 a0001c0001t0003g0034 a0001c0001t0003g0035 a0001c0001t0003g0036 a0001c0001t0003g0037 a0001c0001t0003g0040 a0001c0001t0003g0042 a0001c0001t0003g0043 a0001c0001t0003g0086	11	356	0.0309	26	c.-23 others(37): Show c.-2397_-2372dupATGGGACATCTATATGAGACATACAT	FEZ1	ENSG00000149557.14	transcript	ENST00000278919.8	protein_coding		2182		chr11	TogoVar
FEZ1_chr11_125437881_125501265	125498449	G G	GTATGTCT others(19): Show GTATGTCTCATATAGATGTCCCACATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp2 HG02922.hp1 HG02723.hp2 HG02922.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0141 a0002c0002t0001g0143 a0002c0002t0001g0141 a0002c0002t0001g0143	2	356	0.0056	26	c.-23 others(37): Show c.-2375_-2374insTATGTGGGACATCTATATGAGACATA	FEZ1	ENSG00000149557.14	transcript	ENST00000278919.8	protein_coding		2185		chr11	TogoVar
FEZ1_chr11_125437881_125501265	125498449	G G	GTATGTCT others(19): Show GTATGTCTCATATAGATGTCCCATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG00423.hp2 HG00621.hp2 others(25): Show HG00408.hp2 HG00423.hp2 HG00621.hp2 HG01081.hp1 HG01123.hp2 HG01168.hp2 HG01169.hp1 HG01261.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp2 HG02886.hp1 NA18612.hp2 NA18941.hp2 NA18942.hp1 NA18943.hp1 NA18945.hp2 NA18952.hp2 NA18975.hp2 NA18977.hp2 NA18981.hp2 NA18982.hp2 NA18983.hp1 NA19004.hp1 NA19009.hp2 NA19064.hp2 NA19091.hp1 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0002c0002t0015 others(2): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0015 a0002c0002t0022 a0002c0002t0026	a0001c0001t0001g0002 a0001c0001t0001g0109 a0001c0001t0001g0111 others(23): Show a0001c0001t0001g0002 a0001c0001t0001g0109 a0001c0001t0001g0111 a0001c0001t0001g0118 a0001c0001t0001g0120 a0001c0001t0001g0123 a0001c0001t0001g0130 a0002c0002t0001g0001 a0002c0002t0001g0106 a0002c0002t0001g0107 a0002c0002t0001g0110 a0002c0002t0001g0112 a0002c0002t0001g0113 a0002c0002t0001g0117 a0002c0002t0001g0119 a0002c0002t0001g0121 a0002c0002t0001g0122 a0002c0002t0001g0124 a0002c0002t0001g0126 a0002c0002t0001g0129 a0002c0002t0001g0131 a0002c0002t0001g0132 a0002c0002t0001g0282 a0002c0002t0015g0099 a0002c0002t0022g0125 a0002c0002t0026g0102	28	356	0.0787	26	c.-24 others(37): Show c.-2400_-2375dupTATATGGGACATCTATATGAGACATA	FEZ1	ENSG00000149557.14	transcript	ENST00000278919.8	protein_coding		2185		chr11	TogoVar
FEZ2_chr2_36547258_36603168	36598175	G G	GCCGGCCC others(19): Show GCCGGCCCGGGCCCGGCCCGGCCCAGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0090 a0001c0002t0003g0090	1	404	0.0025	26	c.-34 others(33): Show c.-34_-33insGCTGGGCCGGGCCGGGCCCGGGCCGG	FEZ2	ENSG00000171055.15	transcript	ENST00000405912.8	protein_coding		8		chr2	TogoVar
FGD4_chr12_32394558_32651050	32422288	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0002 a0002c0007t0002	a0002c0007t0002g0147 a0002c0007t0002g0147	1	232	0.0043	26	c.166 others(45): Show c.166+22332_166+22357dupTTTTTTTTTTTTTTTTTTTTTTTTTT	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD4_chr12_32394558_32651050	32585222	T T	TTATATAT others(19): Show TTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03492.hp1 HG03492.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0014 a0001c0004t0014	a0001c0004t0014g0099 a0001c0004t0014g0099	1	232	0.0043	26	c.101 others(45): Show c.1011+2765_1011+2790dupATATATATATATATATATATATATAT	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	4/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD4_chr12_32394558_32651050	32599494	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01952.hp1 HG02055.hp1 others(6): Show HG00741.hp2 HG01952.hp1 HG02055.hp1 HG03195.hp2 HG03225.hp1 HG03942.hp2 HG04199.hp1 NA18966.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0001c0004 a0002c0005 others(1): Show a0001c0003 a0001c0004 a0002c0005 a0002c0006	a0001c0003t0013 a0001c0004t0002 a0001c0004t0014 others(4): Show a0001c0003t0013 a0001c0004t0002 a0001c0004t0014 a0001c0004t0049 a0002c0005t0005 a0002c0006t0002 a0002c0006t0008	a0001c0003t0013g0074 a0001c0004t0002g0042 a0001c0004t0002g0107 others(6): Show a0001c0003t0013g0074 a0001c0004t0002g0042 a0001c0004t0002g0107 a0001c0004t0002g0129 a0001c0004t0014g0073 a0001c0004t0049g0139 a0002c0005t0005g0151 a0002c0006t0002g0155 a0002c0006t0008g0184	9	232	0.0388	26	c.110 others(43): Show c.1101+922_1101+923insAAAAAAAAAAAAAAAAAAAAAAAAAA	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	5/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD5_chr3_14813962_14939571	14853636	C C	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0033 a0002c0003t0001g0033	1	342	0.0029	26	c.252 others(47): Show c.2526-10486_2526-10461dupTTTTTTTTTTTTTTTTTTTTTTTT TT	FGD5	ENSG00000154783.12	transcript	ENST00000285046.10	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr3	TogoVar
FGD6_chr12_95071749_95222467	95083012	A A	AAAATATA others(19): Show AAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0378 a0001c0001t0011g0378	1	384	0.0026	26	c.425 others(45): Show c.4257-1457_4257-1456insATATATATATATATATATATATATTT	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	20/20			chr12	TogoVar
FGD6_chr12_95071749_95222467	95148910	A A	ATATATAA others(19): Show ATATATAATATAAGATATAGCATATAT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02451.hp2 HG01884.hp2 HG02451.hp2	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0005 a0001c0012t0064 a0001c0012t0005 a0001c0012t0064	a0001c0012t0005g0207 a0001c0012t0064g0212 a0001c0012t0005g0207 a0001c0012t0064g0212	2	384	0.0052	26	c.268 others(45): Show c.2685+3900_2685+3901insATATATGCTATATCTTATATTATATA	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	5/20			chr12	TogoVar
FGD6_chr12_95071749_95222467	95149000	A A	ATATAATA others(19): Show ATATAATATATAATATATAGCATATAT	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0022 a0001c0001t0001g0022	1	384	0.0026	26	c.268 others(45): Show c.2685+3810_2685+3811insATATATGCTATATATTATATATTATA	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	5/20			chr12	TogoVar
FGD6_chr12_95071749_95222467	95149060	A A	ATATAATA others(19): Show ATATAATATATAATATATAGCATATAT	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0012 a0012	a0012c0025 a0012c0025	a0012c0025t0001 a0012c0025t0001	a0012c0025t0001g0088 a0012c0025t0001g0088	1	384	0.0026	26	c.268 others(45): Show c.2685+3750_2685+3751insATATATGCTATATATTATATATTATA	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	5/20			chr12	TogoVar
FGF10_chr5_44295247_44394420	44344568	C C	CTGTGTGT others(19): Show CTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0135 a0001c0001t0029g0135	1	350	0.0029	26	c.326 others(45): Show c.326-34064_326-34039dupCACACACACACACACACACACACACA	FGF10	ENSG00000070193.5	transcript	ENST00000264664.5	protein_coding	1/2			chr5	TogoVar
FGF10_chr5_44295247_44394420	44349453	T T	TATATATA others(19): Show TATATATATATATATATATATATCAGA	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01517.hp1 HG01515.hp2 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0004 a0001c0001t0023g0004	2	350	0.0057	26	c.325 others(45): Show c.325+38904_325+38905insTCTGATATATATATATATATATATAT	FGF10	ENSG00000070193.5	transcript	ENST00000264664.5	protein_coding	1/2			chr5	TogoVar
FGF12_chr3_192134390_192732541	192158385	T T	TCTTTCTT others(19): Show TCTTTCTTTCTTTCTTTTCTTTCTCTC	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02145.hp2 HG02647.hp1 HG02109.hp1 HG02145.hp2 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0030 a0001c0001t0001g0043 a0001c0001t0005g0075 a0001c0001t0001g0030 a0001c0001t0001g0043 a0001c0001t0005g0075	3	90	0.0333	26	c.427 others(45): Show c.427+12072_427+12073insGAGAGAAAGAAAAGAAAGAAAGAAAG	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	5/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192279230	G G	GTATATAT others(19): Show GTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA19030.hp1 HG03098.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0036 a0001c0001t0005 a0001c0001t0036	a0001c0001t0005g0031 a0001c0001t0036g0006 a0001c0001t0005g0031 a0001c0001t0036g0006	2	90	0.0222	26	c.228 others(45): Show c.228+56130_228+56131insTATATATATATATATATATATATATA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	4/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192341912	T T	TAGGACCT others(19): Show TAGGACCTTGGCCTTAGAAAGTTGAAC	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01169.hp2 HG01258.hp1 others(11): Show HG01109.hp2 HG01169.hp2 HG01258.hp1 HG01258.hp2 HG02132.hp1 HG02258.hp1 HG03098.hp1 HG03195.hp2 HG03492.hp1 HG03516.hp1 HG04115.hp1 NA18906.hp1 NA18962.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(9): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0001t0023 a0001c0001t0026 a0001c0001t0036	a0001c0001t0001g0089 a0001c0001t0004g0050 a0001c0001t0005g0022 others(11): Show a0001c0001t0001g0089 a0001c0001t0004g0050 a0001c0001t0005g0022 a0001c0001t0006g0049 a0001c0001t0006g0069 a0001c0001t0008g0082 a0001c0001t0010g0071 a0001c0001t0011g0065 a0001c0001t0013g0015 a0001c0001t0013g0036 a0001c0001t0015g0008 a0001c0001t0023g0088 a0001c0001t0026g0072 a0001c0001t0036g0006	14	90	0.1556	26	c.125 others(43): Show c.125-6449_125-6448insGTTCAACTTTCTAAGGCCAAGGTCCT	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	3/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192512835	A A	AATAAATA others(19): Show AATAAATAAATAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02809.hp2 NA18906.hp1 HG02809.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0002 a0001c0001t0013	a0001c0001t0002g0020 a0001c0001t0013g0015 a0001c0001t0002g0020 a0001c0001t0013g0015	2	90	0.0222	26	c.14- others(45): Show c.14-152298_14-152297insATATATATATATATTTATTTATTTAT	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192512835	A A	AATAAATA others(19): Show AATAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03540.hp2 HG03453.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0031 a0001c0001t0003 a0001c0001t0031	a0001c0001t0003g0090 a0001c0001t0031g0042 a0001c0001t0003g0090 a0001c0001t0031g0042	2	90	0.0222	26	c.14- others(45): Show c.14-152298_14-152297insATATATATATATATATATATATTTAT	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192512835	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG03098.hp2 NA19062.hp1 others(1): Show HG01169.hp2 HG03098.hp2 NA19062.hp1 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0011 others(1): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0011 a0001c0001t0015	a0001c0001t0002g0061 a0001c0001t0006g0046 a0001c0001t0011g0065 others(1): Show a0001c0001t0002g0061 a0001c0001t0006g0046 a0001c0001t0011g0065 a0001c0001t0015g0064	4	90	0.0444	26	c.14- others(45): Show c.14-152298_14-152297insATATATATATATATATATATATATAT	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192512859	T T	TATATATA others(19): Show TATATATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG01261.hp1 NA19030.hp1 HG01261.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0006 a0001c0001t0005 a0001c0001t0006	a0001c0001t0005g0031 a0001c0001t0006g0068 a0001c0001t0005g0031 a0001c0001t0006g0068	2	90	0.0222	26	c.14- others(45): Show c.14-152322_14-152321insTTATATATATATATATATATATATAT	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF14_chr13_101705804_101921945	101816269	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01192.hp2 HG02074.hp2 others(4): Show HG01081.hp1 HG01192.hp2 HG02074.hp2 NA18906.hp1 NA18992.hp2 NA19056.hp1 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0008 a0001c0001t0010 a0001c0001t0012 others(3): Show a0001c0001t0008 a0001c0001t0010 a0001c0001t0012 a0001c0001t0033 a0001c0002t0014 a0001c0002t0128	a0001c0001t0008g0173 a0001c0001t0010g0153 a0001c0001t0012g0191 others(4): Show a0001c0001t0008g0173 a0001c0001t0010g0153 a0001c0001t0012g0191 a0001c0001t0033g0049 a0001c0001t0033g0095 a0001c0002t0014g0118 a0001c0002t0128g0155	7	266	0.0263	26	c.408 others(45): Show c.408+52455_408+52456insTTTTTTTTTTTTTTTTTTTTTTTTTT	FGF14	ENSG00000102466.17	transcript	ENST00000376143.5	protein_coding	3/4			chr13	TogoVar
FGF18_chr5_171414647_171462626	171431304	A A	AAGGATGA others(19): Show AAGGATGACACTTGGCTGTTGTCCTGG	intron_variant intron_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0034	1	388	0.0026	26	c.70- others(41): Show c.70-4788_70-4763dupAGGATGACACTTGGCTGTTGTCCTGG	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr5	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(19): Show CTTTCTTTCTTTCTTTCTTTCTTCTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01361.hp1 NA18966.hp2 HG01361.hp1 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0258 a0001c0001t0001g0331 a0001c0001t0001g0258 a0001c0001t0001g0331	2	388	0.0052	26	c.48 others(37): Show c.4824_*4825insTTTCTTTCTTTCTTTCTTTCTTCTTT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(19): Show CTTTCTTTCTTTCTTTCTTTCTTTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19005.hp2 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0108 a0001c0001t0001g0108	1	388	0.0026	26	c.48 others(37): Show c.4824_*4825insTTTCTTTCTTTCTTTCTTTCTTTCTT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461631	T T	TTCTTTCT others(19): Show TTCTTTCTTTCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp2 HG03225.hp1 NA19079.hp2 HG02135.hp2 HG03225.hp1 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0188 a0001c0001t0001g0192 a0001c0002t0001g0190 a0001c0001t0001g0188 a0001c0001t0001g0192 a0001c0002t0001g0190	3	388	0.0077	26	c.48 others(37): Show c.4826_*4827insTCTTTCTTTCTTTCTTTCTTTCTTTC	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4006		chr5	TogoVar
FGF1_chr5_142587178_142691090	142690773	C C	CAACACAA others(19): Show CAACACAAACAACACATAACTAACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01169.hp1 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0201 a0001c0001t0002g0201	1	340	0.0029	26	c.-48 others(37): Show c.-4852_-4851insTGTGTTAGTTATGTGTTGTTTGTGTT	FGF1	ENSG00000113578.18	transcript	ENST00000337706.7	protein_coding		4684		chr5	TogoVar
FGFR1OP2_chr12_26933470_26971648	26950213	G G	GTTTTTTT others(19): Show GTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0078 a0001c0001t0003g0078	1	426	0.0024	26	c.-14 others(43): Show c.-14-3931_-14-3906dupTTTTTTTTTTTTTTTTTTTTTTTTTT	FGFR1OP2	ENSG00000111790.14	transcript	ENST00000229395.8	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGFR2_chr10_121473332_121603444	121577158	A A	AAAAAAAA others(19): Show AAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18954.hp1 NA18954.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0153 a0001c0001t0003g0153	1	240	0.0042	26	c.110 others(45): Show c.110-11455_110-11454insATATATATATATATATTTTTTTTTTT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577158	A A	AAAAAAAA others(19): Show AAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0126 a0001c0001t0003g0126	1	240	0.0042	26	c.110 others(45): Show c.110-11455_110-11454insATATATATATATATATATTTTTTTTT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577178	T T	TAGAGAGA others(19): Show TAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18943.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0062 a0002c0003t0002g0062	1	240	0.0042	26	c.110 others(45): Show c.110-11500_110-11475dupCTCTCTCTCTCTCTCTCTCTCTCTCT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577178	T T	TATATATA others(19): Show TATATATAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02486.hp2 NA18747.hp2 HG02486.hp2 NA18747.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0093 a0001c0001t0001g0085 a0001c0001t0001g0093	2	240	0.0083	26	c.110 others(45): Show c.110-11475_110-11474insCTCTCTCTCTCTCTCTCTCTATATAT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577178	T T	TATATATA others(19): Show TATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG02055.hp1 HG02615.hp2 others(1): Show HG00609.hp1 HG02055.hp1 HG02615.hp2 HG03225.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0002 a0001c0001t0019 a0001c0002t0003 others(1): Show a0001c0001t0002 a0001c0001t0019 a0001c0002t0003 a0002c0003t0004	a0001c0001t0002g0102 a0001c0001t0019g0136 a0001c0002t0003g0137 others(1): Show a0001c0001t0002g0102 a0001c0001t0019g0136 a0001c0002t0003g0137 a0002c0003t0004g0214	4	240	0.0167	26	c.110 others(45): Show c.110-11475_110-11474insCTCTCTCTCTCTCTCTATATATATAT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577178	T T	TATATATA others(19): Show TATATATATATATATATAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0161 a0002c0003t0003g0161	1	240	0.0042	26	c.110 others(45): Show c.110-11475_110-11474insCTCTCTCTCTATATATATATATATAT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR4_chr5_177081915_177103144	177097114	C C	CCTCCTCC others(19): Show CCTCCTCCTCTTCCTCCTCCTCCTCCT	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0008 a0008	a0008c0013 a0008c0013	a0008c0013t0001 a0008c0013t0001	a0008c0013t0001g0177 a0008c0013t0001g0177	1	372	0.0027	26	c.215 others(43): Show c.2154-157_2154-156insCTCCTCTCCTCCTCTTCCTCCTCCTC	FGFR4	ENSG00000160867.15	transcript	ENST00000292408.9	protein_coding	16/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
FGGY_chr1_59292094_59767730	59409594	T T	TTATATAT others(19): Show TTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0002 a0002c0004t0002	a0002c0004t0002g0109 a0002c0004t0002g0109	1	166	0.0060	26	c.554 others(45): Show c.554+30758_554+30759insATATATATATATATATATATATATAT	FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	5/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
FGL1_chr8_17859389_17900524	17875535	C C	CTCTCTCT others(19): Show CTCTCTCTCTCTCTCTCTCTCTCTCTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0045 a0004c0004t0001g0045	1	366	0.0027	26	c.245 others(43): Show c.245-1015_245-1014insAAGAGAGAGAGAGAGAGAGAGAGAGA	FGL1	ENSG00000104760.17	transcript	ENST00000427924.5	protein_coding	3/7			chr8	TogoVar
FGL1_chr8_17859389_17900524	17875535	C C	CTTTCTTT others(19): Show CTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0312 a0004c0004t0001g0312	1	366	0.0027	26	c.245 others(43): Show c.245-1015_245-1014insAAGAAAGAAAGAAAGAAAGAAAGAAA	FGL1	ENSG00000104760.17	transcript	ENST00000427924.5	protein_coding	3/7			chr8	TogoVar
FHAD1_chr1_15242223_15403328	15389447	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03516.hp2 NA18612.hp1 others(1): Show HG03209.hp2 HG03516.hp2 NA18612.hp1 NA19030.hp2	a0004 a0028 a0052 a0004 a0028 a0052	a0004c0004 a0004c0038 a0028c0109 others(1): Show a0004c0004 a0004c0038 a0028c0109 a0052c0088	a0004c0004t0005 a0004c0038t0014 a0028c0109t0007 others(1): Show a0004c0004t0005 a0004c0038t0014 a0028c0109t0007 a0052c0088t0021	a0004c0004t0005g0173 a0004c0038t0014g0155 a0028c0109t0007g0197 others(1): Show a0004c0004t0005g0173 a0004c0038t0014g0155 a0028c0109t0007g0197 a0052c0088t0021g0242	4	294	0.0136	26	c.426 others(45): Show c.4269+1337_4269+1338insAAAAAAAAAAAAAAAAAAAAAAAAAA	FHAD1	ENSG00000142621.21	transcript	ENST00000688493.1	protein_coding	32/33		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHIP1A_chr4_151404176_151675503	151445849	A A	AATATATA others(19): Show AATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01884.hp2 HG02258.hp2 others(4): Show HG00558.hp1 HG01884.hp2 HG02258.hp2 HG02717.hp1 NA18943.hp1 NA18966.hp2 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0022 a0001c0002t0002 others(3): Show a0001c0001t0003 a0001c0001t0022 a0001c0002t0002 a0001c0002t0006 a0001c0002t0043 a0001c0002t0057	a0001c0001t0003g0120 a0001c0001t0022g0025 a0001c0002t0002g0043 others(4): Show a0001c0001t0003g0120 a0001c0001t0022g0025 a0001c0002t0002g0043 a0001c0002t0002g0088 a0001c0002t0006g0041 a0001c0002t0043g0062 a0001c0002t0057g0136	7	252	0.0278	26	c.-35 others(45): Show c.-355-8828_-355-8827insATATATATATATATATATATATATAT	FHIP1A	ENSG00000164142.16	transcript	ENST00000435205.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr4	TogoVar
FHIP2B_chr8_22084150_22109911	22104831	T T	TAAAAAAA others(19): Show TAAAAAAAAAAAAAAAAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02897.hp2 HG03130.hp1 HG02897.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0029 a0001c0001t0025 a0001c0001t0029	a0001c0001t0025g0038 a0001c0001t0029g0099 a0001c0001t0025g0038 a0001c0001t0029g0099	2	394	0.0051	26	c.19 others(37): Show c.1918_*1919insAAAAAAAAAAAAAAAAAAAAAAAAAA	FHIP2B	ENSG00000158863.22	transcript	ENST00000289921.8	protein_coding	17/17	1919	INFO_REALIGN_3_PRIME	chr8	TogoVar
FHIP2B_chr8_22084150_22109911	22106419	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0191 a0001c0001t0002g0191	1	394	0.0025	26	c.34 others(37): Show c.3488_*3489insAAAAAAAAAAAAAAAAAAAAAAAAAA	FHIP2B	ENSG00000158863.22	transcript	ENST00000289921.8	protein_coding		1509		chr8	TogoVar
FHIT_chr3_59742277_61256452	59986540	T T	TATATATA others(19): Show TATATATATACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0023 a0001c0002t0001g0023	1	46	0.0217	26	c.279 others(45): Show c.279+24830_279+24831insGTGTGTGTGTGTGTGTGTATATATAT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	7/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60124009	T T	TATATATA others(19): Show TATATATATAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0005 a0002c0004t0005	a0002c0004t0005g0014 a0002c0004t0005g0014	1	46	0.0217	26	c.104 others(47): Show c.104-109858_104-109857insCTCTCTCTCTCTCTCTCTATATAT AT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60124041	G G	GAGAGAGA others(19): Show GAGAGAGAGAGAGAGAGAGAGAGAGAC	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0022 a0001c0001t0012g0022	1	46	0.0217	26	c.104 others(47): Show c.104-109890_104-109889insGTCTCTCTCTCTCTCTCTCTCTCT CT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60130984	C C	CATATATA others(19): Show CATATATACACATATATACATATGTGT	intron_variant intron_variant	MODIFIER	HG02257.hp1 NA20905.hp1 HG02257.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0006 a0001c0002t0001g0031 a0001c0001t0001g0006 a0001c0002t0001g0031	2	46	0.0435	26	c.104 others(47): Show c.104-116858_104-116833dupACACATATGTATATATGTGTATAT AT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60173915	A A	ATATATAT others(19): Show ATATATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02300.hp1 HG02300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0045 a0001c0001t0002g0045	1	46	0.0217	26	c.104 others(47): Show c.104-159764_104-159763insAAAAAAAAAATATATATATATATA TA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar

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