Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
TESK2_chr1_45338883_45496163	45422759	T T	TTTGTTTT others(20): Show TTTGTTTTTGTTGTTGTTGTTGTTGTTG	intron_variant intron_variant	MODIFIER	NA19090.hp2 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0255 a0001c0001t0001g0255	1	286	0.0035	27	c.223 others(42): Show c.223-914_223-913insCAACAACAACAACAACAACAAAAACAA		TESK2	ENSG00000070759.17	transcript	ENST00000372086.4	protein_coding	2/10						chr1	TogoVar
TESK2_chr1_45338883_45496163	45452032	C C	CAAAAAAA others(20): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0121 a0001c0001t0003g0121	1	286	0.0035	27	c.222 others(44): Show c.222+5531_222+5532insTTTTTTTTTTTTTTTTTTTTTTTTTTT		TESK2	ENSG00000070759.17	transcript	ENST00000372086.4	protein_coding	2/10						chr1	TogoVar
TET1_chr10_68555337_68699487	68597030	A A	ATTTTTTT others(20): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0021 a0001c0021	a0001c0021t0001 a0001c0021t0001	a0001c0021t0001g0271 a0001c0021t0001g0271	1	282	0.0036	27	c.191 others(46): Show c.1915-3930_1915-3929insTTTTTTTTTTTTTTTTTTTTTTTTTT T		TET1	ENSG00000138336.9	transcript	ENST00000373644.5	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr10	TogoVar
TET1_chr10_68555337_68699487	68624658	T T	TTCTTTCT others(20): Show TTCTTTCTTTCTTTCTTTCTTTCTTCTC	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0008 a0008	a0008c0010 a0008c0010	a0008c0010t0002 a0008c0010t0002	a0008c0010t0002g0139 a0008c0010t0002g0139	1	282	0.0036	27	c.196 others(48): Show c.1969-20037_1969-20036insTTCTTTCTTTCTTTCTTTCTTCTC TCT		TET1	ENSG00000138336.9	transcript	ENST00000373644.5	protein_coding	3/11					INFO_REALIGN_3_PRIME	chr10	TogoVar
TET2_chr4_105141876_105284803	105260150	T T	TTAAAGTC others(20): Show TTAAAGTCACTGTAATGAATGCATTTAA	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG02602.hp2 HG01099.hp2 HG02602.hp2	a0011 a0011	a0011c0015 a0011c0015	a0011c0015t0045 a0011c0015t0046 a0011c0015t0045 a0011c0015t0046	a0011c0015t0045g0348 a0011c0015t0046g0347 a0011c0015t0045g0348 a0011c0015t0046g0347	2	348	0.0058	27	c.395 others(44): Show c.3954+409_3954+435dupTAAAGTCACTGTAATGAATGCATTTAA		TET2	ENSG00000168769.14	transcript	ENST00000380013.9	protein_coding	7/10					INFO_REALIGN_3_PRIME	chr4	TogoVar
TEX101_chr19_43409890_43423597	43423007	A A	ATGTTTAT others(20): Show ATGTTTATTTTATTATTGAGTTTTGAGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp2 HG00423.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0001 a0001c0002t0001g0001	1	412	0.0024	27	c.46 others(38): Show c.4610_*4611insTGTTTATTTTATTATTGAGTTTTGAGT		TEX101	ENSG00000131126.19	transcript	ENST00000598265.2	protein_coding					4411		chr19	TogoVar
TEX11_chrX_70523940_70913711	70683918	T T	TAATGGTG others(20): Show TAATGGTGATAGGACAGTCCTTTCAGCA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG02280.hp1 NA20129.hp1 HG00741.hp2 HG02280.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0043 a0001c0001t0001g0108 a0002c0002t0001g0098 a0001c0001t0001g0043 a0001c0001t0001g0108 a0002c0002t0001g0098	3	229	0.0131	27	c.100 others(46): Show c.1005-1120_1005-1094dupTGCTGAAAGGACTGTCCTATCACCAT T		TEX11	ENSG00000120498.14	transcript	ENST00000374333.7	protein_coding	13/29						chrX	TogoVar
TEX11_chrX_70523940_70913711	70750933	A A	AAAAATAT others(20): Show AAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0197 a0001c0001t0001g0197	1	229	0.0044	27	c.693 others(44): Show c.693-6715_693-6714insATATATATATATATATATATATATTTT		TEX11	ENSG00000120498.14	transcript	ENST00000374333.7	protein_coding	9/29						chrX	TogoVar
TEX36_chr10_125650694_125688163	125687695	G G	GTTGTGTT others(20): Show GTTGTGTTCTCTGGGGTGGGTGCTGGGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	410	0.0024	27	c.-47 others(38): Show c.-4707_-4706insGCCCAGCACCCACCCCAGAGAACACAA		TEX36	ENSG00000175018.13	transcript	ENST00000368821.4	protein_coding					4533		chr10	TogoVar
TEX49_chr12_48722435_48770790	48723097	C C	CTTGAGAT others(20): Show CTTGAGATATTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp1 HG02559.hp1 HG02622.hp1 HG02257.hp1 HG02559.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0120 a0001c0001t0001g0107 a0001c0001t0001g0110 a0001c0001t0001g0120	3	322	0.0093	27	c.-43 others(38): Show c.-4384_-4383insTTGAGATATTTTTTTTTTTTTTTTTTT		TEX49	ENSG00000257987.6	transcript	ENST00000548380.6	protein_coding					4337		chr12	TogoVar
TFCP2L1_chr2_121211587_121290202	121287677	C C	CTTTTTTT others(20): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG01071.hp2 HG01123.hp2 others(4): Show HG00741.hp1 HG01071.hp2 HG01123.hp2 HG01433.hp1 HG01884.hp1 NA18970.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0007 a0001c0002t0003 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0002t0003 a0001c0003t0053	a0001c0001t0001g0082 a0001c0001t0001g0150 a0001c0001t0001g0200 others(4): Show a0001c0001t0001g0082 a0001c0001t0001g0150 a0001c0001t0001g0200 a0001c0001t0007g0085 a0001c0002t0003g0158 a0001c0002t0003g0190 a0001c0003t0053g0073	7	378	0.0185	27	c.-25 others(38): Show c.-2569_-2568insAAAAAAAAAAAAAAAAAAAAAAAAAAA		TFCP2L1	ENSG00000115112.8	transcript	ENST00000263707.6	protein_coding					2476		chr2	TogoVar
TFDP2_chr3_141939428_142154544	141968962	T T	TATCTATA others(20): Show TATCTATATATATAGATATATATATAAC	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0088 a0001c0001t0088	a0001c0001t0088g0161 a0001c0001t0088g0161	1	252	0.0040	27	c.732 others(44): Show c.732+1110_732+1111insGTTATATATATATCTATATATATAGAT		TFDP2	ENSG00000114126.18	transcript	ENST00000489671.6	protein_coding	9/12						chr3	TogoVar
TFDP2_chr3_141939428_142154544	141977107	T T	TATATATA others(20): Show TATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02809.hp1 HG03471.hp2 HG02630.hp1 HG02809.hp1 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0088 a0001c0001t0113 a0001c0001t0018 a0001c0001t0088 a0001c0001t0113	a0001c0001t0018g0032 a0001c0001t0088g0161 a0001c0001t0113g0098 a0001c0001t0018g0032 a0001c0001t0088g0161 a0001c0001t0113g0098	3	252	0.0119	27	c.519 others(44): Show c.519+1412_519+1413insTATATATATATATATATATATATATAT		TFDP2	ENSG00000114126.18	transcript	ENST00000489671.6	protein_coding	7/12						chr3	TogoVar
TFEC_chr7_115930152_116035763	115944013	A A	ATTTTTTT others(20): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0283 a0001c0001t0002g0283	1	394	0.0025	27	c.516 others(44): Show c.516-2000_516-1974dupAAAAAAAAAAAAAAAAAAAAAAAAAAA		TFEC	ENSG00000105967.16	transcript	ENST00000265440.12	protein_coding	6/7						chr7	TogoVar
TGM2_chr20_38122385_38170270	38149678	C C	CAAAAAAA others(20): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG03098.hp1 HG04228.hp2 others(8): Show HG00423.hp2 HG03098.hp1 HG04228.hp2 NA18944.hp1 NA18945.hp1 NA18983.hp1 NA18987.hp2 NA18988.hp2 NA19000.hp2 NA19057.hp2 NA19080.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0003c0010	a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 others(3): Show a0001c0001t0003 a0001c0002t0001 a0001c0002t0002 a0001c0002t0016 a0001c0004t0004 a0003c0010t0002	a0001c0001t0003g0266 a0001c0002t0001g0265 a0001c0002t0002g0038 others(8): Show a0001c0001t0003g0266 a0001c0002t0001g0265 a0001c0002t0002g0038 a0001c0002t0002g0175 a0001c0002t0002g0244 a0001c0002t0002g0247 a0001c0002t0002g0248 a0001c0002t0016g0290 a0001c0004t0004g0282 a0003c0010t0002g0264 a0003c0010t0002g0275	11	360	0.0306	27	c.552 others(44): Show c.552+1260_552+1261insTTTTTTTTTTTTTTTTTTTTTTTTTTT		TGM2	ENSG00000198959.12	transcript	ENST00000361475.7	protein_coding	4/12						chr20	TogoVar
TGS1_chr8_55768446_55831445	55801582	C C	CCTTTTTT others(20): Show CCTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0005 a0003c0003t0005	a0003c0003t0005g0317 a0003c0003t0005g0317	1	370	0.0027	27	c.185 others(44): Show c.1850-875_1850-874insCTTTTTTTTTTTTTTTTTTTTTTTTTT		TGS1	ENSG00000137574.11	transcript	ENST00000260129.6	protein_coding	8/12						chr8	TogoVar
THADA_chr2_43225851_43601038	43489874	C C	CAAAAAAA others(20): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0003 a0003	a0003c0009 a0003c0009	a0003c0009t0001 a0003c0009t0001	a0003c0009t0001g0030 a0003c0009t0001g0030	1	206	0.0049	27	c.374 others(46): Show c.3745-4550_3745-4549insTTTTTTTTTTTTTTTTTTTTTTTTTT T		THADA	ENSG00000115970.19	transcript	ENST00000405975.7	protein_coding	25/37						chr2	TogoVar
THAP11_chr16_67837320_67849195	67842862	G G	GGCAGCAG others(20): Show GGCAGCAGCAGCAACAGCAGCAGCAGCA	disruptive_inframe_insertion disruptive_inframe_insertion	MODERATE	NA18966.hp1 NA18966.hp1	a0003 a0003	a0003c0017 a0003c0017	a0003c0017t0001 a0003c0017t0001	a0003c0017t0001g0000 a0003c0017t0001g0000	1	286	0.0035	27	c.312 others(34): Show c.312_338dupGCAGCAGCAACAGCAGCAGCAGCAGCA	p.Gln others(13): Show p.Gln105_Gln113dup	THAP11	ENSG00000168286.3	transcript	ENST00000303596.3	protein_coding	1/1	574/1876	339/945	113/314		INFO_REALIGN_3_PRIME	chr16	TogoVar
THAP11_chr16_67837320_67849195	67842875	A A	ACAGCAGC others(20): Show ACAGCAGCAGCAGCAGCAGCAGCAGCAG	disruptive_inframe_insertion disruptive_inframe_insertion	MODERATE	HG02486.hp2 HG02486.hp2	a0003 a0003	a0003c0018 a0003c0018	a0003c0018t0001 a0003c0018t0001	a0003c0018t0001g0000 a0003c0018t0001g0000	1	286	0.0035	27	c.338 others(34): Show c.338_339insGCAGCAGCAGCAGCAGCAGCAGCAGCA	p.Gln others(13): Show p.Gln105_Gln113dup	THAP11	ENSG00000168286.3	transcript	ENST00000303596.3	protein_coding	1/1	574/1876	339/945	113/314		INFO_REALIGN_3_PRIME	chr16	TogoVar
THAP11_chr16_67837320_67849195	67842902	A A	ACAGCAGC others(20): Show ACAGCAGCAGCAGCAGCAACAGCAGCAG	disruptive_inframe_insertion disruptive_inframe_insertion	MODERATE	HG04199.hp1 NA19085.hp1 NA19085.hp2 HG04199.hp1 NA19085.hp1 NA19085.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0001 a0003c0005t0001	a0003c0005t0001g0000 a0003c0005t0001g0000	3	286	0.0105	27	c.366 others(34): Show c.366_392dupACAGCAGCAGCAGCAGCAGCAGCAGCA	p.Gln others(13): Show p.Gln123_Gln131dup	THAP11	ENSG00000168286.3	transcript	ENST00000303596.3	protein_coding	1/1	628/1876	393/945	131/314		INFO_REALIGN_3_PRIME	chr16	TogoVar
THBS4_chr5_80030348_80088287	80080579	C C	CTTTTTTT others(20): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG02735.hp2 NA19007.hp1 others(2): Show HG02129.hp2 HG02735.hp2 NA19007.hp1 NA19077.hp1 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0049 a0001c0001t0001g0106 a0001c0001t0001g0109 others(2): Show a0001c0001t0001g0049 a0001c0001t0001g0106 a0001c0001t0001g0109 a0001c0001t0001g0118 a0001c0001t0001g0149	5	394	0.0127	27	c.268 others(44): Show c.2684+527_2684+528insTTTTTTTTTTTTTTTTTTTTTTTTTTT		THBS4	ENSG00000113296.14	transcript	ENST00000350881.6	protein_coding	20/21					INFO_REALIGN_3_PRIME	chr5	TogoVar
THEG_chr19_356747_381026	374872	G G	GAAGATGC others(20): Show GAAGATGCCAAATGCCAGGATATCTGCC	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00733.hp2	a0020 a0020	a0020c0035 a0020c0035	a0020c0035t0001 a0020c0035t0001	a0020c0035t0001g0217 a0020c0035t0001g0217	1	370	0.0027	27	c.309 others(42): Show c.309-478_309-452dupGGCAGATATCCTGGCATTTGGCATCTT		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding	1/7						chr19	TogoVar
THEG_chr19_356747_381026	376720	G G	GCCCCCAC others(20): Show GCCCCCACCCAGCCTCTCCCCCTCTGTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0001 a0006c0006t0001	a0006c0006t0001g0347 a0006c0006t0001g0347	1	370	0.0027	27	c.-75 others(36): Show c.-751_-750insTACAGAGGGGGAGAGGCTGGGTGGGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					695		chr19	TogoVar
THEG_chr19_356747_381026	376722	C C	CCCACCCA others(20): Show CCCACCCAGCCTCTCCCCCCCCGTGCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp2 NA19030.hp2 HG01243.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0008 a0001c0001t0022g0008	2	370	0.0054	27	c.-75 others(36): Show c.-753_-752insAGGCACGGGGGGGGAGAGGCTGGGTGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					697		chr19	TogoVar
THEG_chr19_356747_381026	376746	G G	GCCCCACC others(20): Show GCCCCACCCAGCCTCTCCCCCCCTGTGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0080 a0001c0001t0002g0080	1	370	0.0027	27	c.-77 others(36): Show c.-777_-776insGCACAGGGGGGGAGAGGCTGGGTGGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					721		chr19	TogoVar
THEG_chr19_356747_381026	376748	C C	CCCACCCA others(20): Show CCCACCCAGCCTCTCCCCCTCTGTGCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0206 a0001c0001t0010g0206	1	370	0.0027	27	c.-77 others(36): Show c.-779_-778insAGGCACAGAGGGGGAGAGGCTGGGTGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					723		chr19	TogoVar
THEG_chr19_356747_381026	376767	T T	TCTGTGCC others(20): Show TCTGTGCCCCACCCAGCCTCTCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp1 HG03540.hp1 HG02723.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0002 a0001c0001t0013	a0001c0001t0002g0089 a0001c0001t0013g0091 a0001c0001t0002g0089 a0001c0001t0013g0091	2	370	0.0054	27	c.-79 others(36): Show c.-798_-797insGGGGGGGAGAGGCTGGGTGGGGCACAG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					742		chr19	TogoVar
THEG_chr19_356747_381026	376789	C C	CCCCCCCC others(20): Show CCCCCCCCGTGCCTCCACCCAGCCCTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0051 a0001c0001t0002g0051	1	370	0.0027	27	c.-82 others(36): Show c.-820_-819insAGAGGGCTGGGTGGAGGCACGGGGGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					764		chr19	TogoVar
THEG_chr19_356747_381026	376825	G G	GCCCCACC others(20): Show GCCCCACCCAGCCTCTCCCCCCCTGTGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp2 HG01175.hp2 HG00741.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0214 a0001c0001t0003g0215 a0001c0001t0003g0214 a0001c0001t0003g0215	2	370	0.0054	27	c.-85 others(36): Show c.-856_-855insGCACAGGGGGGGAGAGGCTGGGTGGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					800		chr19	TogoVar
THEG_chr19_356747_381026	376875	T T	TGTGCCCC others(20): Show TGTGCCCCACCCAGCCTCTCCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0034 a0002c0002t0002g0034	1	370	0.0027	27	c.-90 others(36): Show c.-906_-905insGGGGGGGGGAGAGGCTGGGTGGGGCAC		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					850		chr19	TogoVar
THEG_chr19_356747_381026	376905	G G	GCCCCACC others(20): Show GCCCCACCCAGCCTCTCCCCCTCTGTGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp1 HG01952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0075 a0001c0001t0032g0075	1	370	0.0027	27	c.-93 others(36): Show c.-936_-935insGCACAGAGGGGGAGAGGCTGGGTGGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					880		chr19	TogoVar
THEG_chr19_356747_381026	376928	T T	TGTGCCCC others(20): Show TGTGCCCCACCCAGCCTCTCCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03492.hp1 HG03492.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0062 a0003c0004t0062	a0003c0004t0062g0157 a0003c0004t0062g0157	1	370	0.0027	27	c.-95 others(36): Show c.-959_-958insGGGGGGGGGAGAGGCTGGGTGGGGCAC		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					903		chr19	TogoVar
THEG_chr19_356747_381026	376928	T T	TGTGCCCC others(20): Show TGTGCCCCCACCCAGCCTCTCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0067 a0001c0001t0002g0067	1	370	0.0027	27	c.-95 others(36): Show c.-959_-958insGGGGGGGGAGAGGCTGGGTGGGGGCAC		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					903		chr19	TogoVar
THEG_chr19_356747_381026	376951	C C	CCCCGTGC others(20): Show CCCCGTGCCCCACCCAGCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0023 a0006c0006t0023	a0006c0006t0023g0165 a0006c0006t0023g0165	1	370	0.0027	27	c.-98 others(36): Show c.-982_-981insAGGGGGAGAGGCTGGGTGGGGCACGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					926		chr19	TogoVar
THEG_chr19_356747_381026	376951	C C	CTCCGTGC others(20): Show CTCCGTGCCCCACCCAGCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0021 a0001c0003t0021	a0001c0003t0021g0123 a0001c0003t0021g0123	1	370	0.0027	27	c.-98 others(36): Show c.-982_-981insAGGGGGAGAGGCTGGGTGGGGCACGGA		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					926		chr19	TogoVar
THEG_chr19_356747_381026	376951	C C	CTCTGTGC others(20): Show CTCTGTGCCCCACCCAGCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0043 a0001c0001t0043	a0001c0001t0043g0118 a0001c0001t0043g0118	1	370	0.0027	27	c.-98 others(36): Show c.-982_-981insAGGGGGAGAGGCTGGGTGGGGCACAGA		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					926		chr19	TogoVar
THEG_chr19_356747_381026	376976	C C	CTCTGTGC others(20): Show CTCTGTGCCCCACCCAGCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0196 a0001c0001t0001g0196	1	370	0.0027	27	c.-10 others(38): Show c.-1007_-1006insAGGGGGAGAGGCTGGGTGGGGCACAGA		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					951		chr19	TogoVar
THEG_chr19_356747_381026	377010	C C	CCCACCCA others(20): Show CCCACCCAGCCTCTCCCCCCCCGTGCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0181 a0001c0001t0001g0181	1	370	0.0027	27	c.-10 others(38): Show c.-1041_-1040insAGGCACGGGGGGGGAGAGGCTGGGTGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					985		chr19	TogoVar
THEG_chr19_356747_381026	377034	G G	GCCCCACC others(20): Show GCCCCACCCAGCCTCTCCCCCCCCGTGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp1 HG01074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0148	1	370	0.0027	27	c.-10 others(38): Show c.-1065_-1064insGCACGGGGGGGGAGAGGCTGGGTGGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1009		chr19	TogoVar
THEG_chr19_356747_381026	377057	T T	TGTGCCCC others(20): Show TGTGCCCCCACCCAGCCTCTCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0046 a0001c0001t0013g0046	1	370	0.0027	27	c.-10 others(38): Show c.-1088_-1087insGGGGGGGGAGAGGCTGGGTGGGGGCAC		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1032		chr19	TogoVar
THEG_chr19_356747_381026	377209	C C	CTCTGTGC others(20): Show CTCTGTGCCCCACCCAGCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0052 a0001c0001t0006g0052	1	370	0.0027	27	c.-12 others(38): Show c.-1240_-1239insAGGGGGAGAGGCTGGGTGGGGCACAGA		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1184		chr19	TogoVar
THEG_chr19_356747_381026	377237	T T	TGTGCCCC others(20): Show TGTGCCCCCACCCAGCCTCTCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0039	a0001c0001t0039g0119 a0001c0001t0039g0119	1	370	0.0027	27	c.-12 others(38): Show c.-1268_-1267insGGGGGGGGAGAGGCTGGGTGGGGGCAC		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1212		chr19	TogoVar
THEG_chr19_356747_381026	377340	C C	CTCTGTGC others(20): Show CTCTGTGCCCCACCCAGCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG01099.hp2 HG01496.hp1 others(4): Show HG00735.hp2 HG01099.hp2 HG01496.hp1 HG01516.hp1 HG02523.hp1 HG03688.hp1 NA18969.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0033 a0001c0001 a0002c0002 a0003c0033	a0001c0001t0001 a0001c0001t0007 a0001c0001t0010 others(2): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0010 a0002c0002t0001 a0003c0033t0004	a0001c0001t0001g0166 a0001c0001t0001g0227 a0001c0001t0007g0226 others(4): Show a0001c0001t0001g0166 a0001c0001t0001g0227 a0001c0001t0007g0226 a0001c0001t0010g0216 a0002c0002t0001g0300 a0002c0002t0001g0334 a0003c0033t0004g0191	7	370	0.0189	27	c.-13 others(38): Show c.-1371_-1370insAGGGGGAGAGGCTGGGTGGGGCACAGA		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1315		chr19	TogoVar
THEG_chr19_356747_381026	377345	G G	GCCCCACC others(20): Show GCCCCACCCAGCCTCTCCCCCTCTGTGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp2 HG00673.hp1 HG01167.hp2 others(2): Show HG00609.hp2 HG00673.hp1 HG01167.hp2 HG03831.hp2 NA18942.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0003 a0001c0023 a0002c0002 others(1): Show a0001c0003 a0001c0023 a0002c0002 a0005c0005	a0001c0003t0001 a0001c0023t0001 a0002c0002t0001 others(1): Show a0001c0003t0001 a0001c0023t0001 a0002c0002t0001 a0005c0005t0004	a0001c0003t0001g0130 a0001c0023t0001g0134 a0002c0002t0001g0328 others(2): Show a0001c0003t0001g0130 a0001c0023t0001g0134 a0002c0002t0001g0328 a0002c0002t0001g0341 a0005c0005t0004g0349	5	370	0.0135	27	c.-13 others(38): Show c.-1376_-1375insGCACAGAGGGGGAGAGGCTGGGTGGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1320		chr19	TogoVar
THEG_chr19_356747_381026	377392	T T	TCTGTGCC others(20): Show TCTGTGCCCCCACCCAGCCTCTCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0008 a0008	a0008c0008 a0008c0008	a0008c0008t0004 a0008c0008t0004	a0008c0008t0004g0207 a0008c0008t0004g0207	1	370	0.0027	27	c.-14 others(38): Show c.-1423_-1422insGGGGGGAGAGGCTGGGTGGGGGCACAG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1367		chr19	TogoVar
THEG_chr19_356747_381026	377394	T T	TGTGCCCC others(20): Show TGTGCCCCCACCCAGCCTCTCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0040	a0001c0001t0040g0120 a0001c0001t0040g0120	1	370	0.0027	27	c.-14 others(38): Show c.-1425_-1424insGGGGGGGGAGAGGCTGGGTGGGGGCAC		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1369		chr19	TogoVar
THEG_chr19_356747_381026	377417	C C	CTCCGTGC others(20): Show CTCCGTGCCCCACCCAGCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0008 a0001c0003t0008	a0001c0003t0008g0132 a0001c0003t0008g0132	1	370	0.0027	27	c.-14 others(38): Show c.-1448_-1447insAGGGGGAGAGGCTGGGTGGGGCACGGA		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1392		chr19	TogoVar
THEG_chr19_356747_381026	377417	C C	CTCTGTGC others(20): Show CTCTGTGCCCCACCCAGCCTCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00621.hp2 HG01192.hp1 HG03017.hp2 others(3): Show HG00621.hp2 HG01192.hp1 HG03017.hp2 NA18953.hp1 NA18989.hp2 NA19068.hp1	a0002 a0003 a0005 others(1): Show a0002 a0003 a0005 a0011	a0002c0002 a0003c0004 a0005c0005 others(1): Show a0002c0002 a0003c0004 a0005c0005 a0011c0018	a0002c0002t0001 a0003c0004t0024 a0005c0005t0004 others(1): Show a0002c0002t0001 a0003c0004t0024 a0005c0005t0004 a0011c0018t0003	a0002c0002t0001g0175 a0002c0002t0001g0197 a0002c0002t0001g0203 others(3): Show a0002c0002t0001g0175 a0002c0002t0001g0197 a0002c0002t0001g0203 a0003c0004t0024g0152 a0005c0005t0004g0205 a0011c0018t0003g0355	6	370	0.0162	27	c.-14 others(38): Show c.-1448_-1447insAGGGGGAGAGGCTGGGTGGGGCACAGA		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1392		chr19	TogoVar
THEG_chr19_356747_381026	377422	G G	GCCCCACC others(20): Show GCCCCACCCAGCCTCTCCCCCTCTGTGC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19002.hp2 NA19002.hp2	a0016 a0016	a0016c0022 a0016c0022	a0016c0022t0047 a0016c0022t0047	a0016c0022t0047g0133 a0016c0022t0047g0133	1	370	0.0027	27	c.-14 others(38): Show c.-1453_-1452insGCACAGAGGGGGAGAGGCTGGGTGGGG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1397		chr19	TogoVar
THEG_chr19_356747_381026	377443	T T	TCTGTGCC others(20): Show TCTGTGCCCCACCCAGCCTCTCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0213 a0001c0001t0001g0213	1	370	0.0027	27	c.-14 others(38): Show c.-1474_-1473insGGGGGGGAGAGGCTGGGTGGGGCACAG		THEG	ENSG00000105549.11	transcript	ENST00000342640.9	protein_coding					1418		chr19	TogoVar

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