Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TMPRSS9_chr19_2355265_2431261	2418669	T T	TTTCCTTC others(20): Show TTTCCTTCCCTTCCTCCCTTTCCTTCCC	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0010 a0010	a0010c0030 a0010c0030	a0010c0030t0003 a0010c0030t0003	a0010c0030t0003g0105 a0010c0030t0003g0105	1	114	0.0088	27	c.215 others(44): Show c.2154+541_2154+542insTCCTCCCTTTCCTTCCCTTCCTTCCCT	TMPRSS9	ENSG00000178297.15	transcript	ENST00000696167.1	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr19	TogoVar
TMPRSS9_chr19_2355265_2431261	2418776	C C	CCTTTCCT others(20): Show CCTTTCCTTTCCTTCCCTCCCTCCCTTT	intron_variant intron_variant	MODIFIER	NA19066.hp2 NA19066.hp2	a0022 a0022	a0022c0023 a0022c0023	a0022c0023t0002 a0022c0023t0002	a0022c0023t0002g0013 a0022c0023t0002g0013	1	114	0.0088	27	c.215 others(44): Show c.2154+639_2154+640insTTTCCTTTCCTTCCCTCCCTCCCTTTC	TMPRSS9	ENSG00000178297.15	transcript	ENST00000696167.1	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr19	TogoVar
TMPRSS9_chr19_2355265_2431261	2418797	T T	TTTCCTTC others(20): Show TTTCCTTCCCTTCCTCCCTTTCCTTCCC	intron_variant intron_variant	MODIFIER	HG02135.hp1 NA20905.hp1 HG02135.hp1 NA20905.hp1	a0003 a0007 a0003 a0007	a0003c0014 a0007c0008 a0003c0014 a0007c0008	a0003c0014t0003 a0007c0008t0003 a0003c0014t0003 a0007c0008t0003	a0003c0014t0003g0044 a0007c0008t0003g0015 a0003c0014t0003g0044 a0007c0008t0003g0015	2	114	0.0175	27	c.215 others(44): Show c.2154+669_2154+670insTCCTCCCTTTCCTTCCCTTCCTTCCCT	TMPRSS9	ENSG00000178297.15	transcript	ENST00000696167.1	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr19	TogoVar
TMPRSS9_chr19_2355265_2431261	2418883	T T	TTTCCTTC others(20): Show TTTCCTTCCCTTCCTCCCTTTCCTTCCC	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01071.hp1 HG03704.hp1 others(3): Show HG01069.hp2 HG01071.hp1 HG03704.hp1 NA18970.hp1 NA19079.hp2 NA20905.hp1	a0003 a0006 a0007 a0003 a0006 a0007	a0003c0003 a0006c0007 a0007c0008 a0003c0003 a0006c0007 a0007c0008	a0003c0003t0003 a0006c0007t0003 a0007c0008t0003 a0003c0003t0003 a0006c0007t0003 a0007c0008t0003	a0003c0003t0003g0003 a0003c0003t0003g0004 a0003c0003t0003g0063 others(3): Show a0003c0003t0003g0003 a0003c0003t0003g0004 a0003c0003t0003g0063 a0003c0003t0003g0067 a0006c0007t0003g0042 a0007c0008t0003g0015	6	114	0.0526	27	c.215 others(44): Show c.2154+755_2154+756insTCCTCCCTTTCCTTCCCTTCCTTCCCT	TMPRSS9	ENSG00000178297.15	transcript	ENST00000696167.1	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr19	TogoVar
TMSB15B_chrX_103957627_103970976	103967474	T T	TCTTTCTT others(20): Show TCTTTCTTTCTTTCTTTCTTTCTTTCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	268	0.0037	27	c.18 others(38): Show c.1898_*1899insCTTTCTTTCTTTCTTTCTTTCTTTCTC	TMSB15B	ENSG00000158427.15	transcript	ENST00000540220.6	protein_coding		1499		chrX	TogoVar
TMTC1_chr12_29495840_29788942	29668454	C C	CTTTTTTT others(20): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0080 a0002c0003t0080	a0002c0003t0080g0273 a0002c0003t0080g0273	1	276	0.0036	27	c.939 others(46): Show c.939-35119_939-35118insAAAAAAAAAAAAAAAAAAAAAAAAAA A	TMTC1	ENSG00000133687.16	transcript	ENST00000539277.6	protein_coding	5/17			chr12	TogoVar
TMX2_chr11_57707593_57745973	57717718	A A	AGGGAGAA others(20): Show AGGGAGAAGGGAGAGGGAGAAGGGAGAG	intron_variant intron_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0242 a0001c0001t0001g0242	1	344	0.0029	27	c.189 others(44): Show c.189+4917_189+4918insAGGGAGAGGGAGAAGGGAGAGGGGAGA	TMX2	ENSG00000213593.10	transcript	ENST00000278422.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
TMX2_chr11_57707593_57745973	57717746	G G	GGGGAGAG others(20): Show GGGGAGAGGGGAGAGGGGAGAGGGGAGA	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02004.hp1 HG02572.hp2 others(7): Show HG01496.hp2 HG02004.hp1 HG02572.hp2 HG02717.hp2 HG02897.hp2 HG02970.hp2 HG03098.hp2 HG03209.hp1 NA18522.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0099 others(7): Show a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0311 a0001c0001t0001g0312 a0001c0001t0001g0313	10	344	0.0291	27	c.189 others(44): Show c.189+4948_189+4949insGAGAGGGGAGAGGGGAGAGGGAGAGGG	TMX2	ENSG00000213593.10	transcript	ENST00000278422.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
TMX4_chr20_7972346_8024761	8018528	G G	GAGAGAGA others(20): Show GAGAGAGAGTGTCTCAGCAATCATTTTC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0033 a0002c0001t0033	a0002c0001t0033g0164 a0002c0001t0033g0164	1	346	0.0029	27	c.176 others(42): Show c.176+909_176+910insGAAAATGATTGCTGAGACACTCTCTCT	TMX4	ENSG00000125827.9	transcript	ENST00000246024.7	protein_coding	1/7			chr20	TogoVar
TNFAIP8L2_chr1_151151649_151164749	151160238	C C	CAAAAAAA others(20): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02004.hp2 HG02976.hp2 HG03516.hp2 others(1): Show HG02004.hp2 HG02976.hp2 HG03516.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0021 a0001c0001t0001g0001 a0001c0001t0001g0021	4	348	0.0115	27	c.98 others(36): Show c.986_*987insAAAAAAAAAAAAAAAAAAAAAAAAAAA	TNFAIP8L2	ENSG00000163154.6	transcript	ENST00000368910.4	protein_coding		490		chr1	TogoVar
TNFAIP8_chr5_119351019_119404688	119394611	A A	ATTTTTTT others(20): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0096 a0001c0002t0096	a0001c0002t0096g0144 a0001c0002t0096g0144	1	384	0.0026	27	c.12 others(38): Show c.1249_*1250insTTTTTTTTTTTTTTTTTTTTTTTTTTT	TNFAIP8	ENSG00000145779.8	transcript	ENST00000504771.3	protein_coding	2/2	1250	INFO_REALIGN_3_PRIME	chr5	TogoVar
TNFRSF10A_chr8_23185452_23230102	23213436	C C	CTTTTTTT others(20): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03516.hp2 HG02818.hp2 HG03516.hp2	a0002 a0008 a0002 a0008	a0002c0002 a0008c0008 a0002c0002 a0008c0008	a0002c0002t0001 a0008c0008t0011 a0002c0002t0001 a0008c0008t0011	a0002c0002t0001g0225 a0008c0008t0011g0226 a0002c0002t0001g0225 a0008c0008t0011g0226	2	358	0.0056	27	c.307 others(44): Show c.307-1251_307-1225dupAAAAAAAAAAAAAAAAAAAAAAAAAAA	TNFRSF10A	ENSG00000104689.10	transcript	ENST00000221132.8	protein_coding	1/9			chr8	TogoVar
TNFRSF1B_chr1_12161991_12214220	12174122	T T	TTTCTTCT others(20): Show TTTCTTCTTCTTCTTCTTCTTCTTCTTC	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0277 a0001c0001t0006g0277	1	362	0.0028	27	c.78+ others(42): Show c.78+6970_78+6996dupTCTTCTTCTTCTTCTTCTTCTTCTTCT	TNFRSF1B	ENSG00000028137.19	transcript	ENST00000376259.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNFRSF1B_chr1_12161991_12214220	12174148	T T	TCTCCTTC others(20): Show TCTCCTTCTCCTTCTCCTTCTCCTTCTC	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0057	1	362	0.0028	27	c.78+ others(42): Show c.78+6981_78+6982insCCTTCTCCTTCTCCTTCTCCTTCTCCT	TNFRSF1B	ENSG00000028137.19	transcript	ENST00000376259.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNFRSF1B_chr1_12161991_12214220	12174154	T T	TCTCCTTC others(20): Show TCTCCTTCTCCTTCTCCTTCTCCTTCTC	intron_variant intron_variant	MODIFIER	HG01123.hp1 NA19074.hp1 HG01123.hp1 NA19074.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0005 a0001c0001t0001 a0002c0002t0005	a0001c0001t0001g0061 a0002c0002t0005g0141 a0001c0001t0001g0061 a0002c0002t0005g0141	2	362	0.0055	27	c.78+ others(42): Show c.78+6987_78+6988insCCTTCTCCTTCTCCTTCTCCTTCTCCT	TNFRSF1B	ENSG00000028137.19	transcript	ENST00000376259.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNFRSF1B_chr1_12161991_12214220	12174160	T T	TCTCCTTC others(20): Show TCTCCTTCTCCTTCTCCTTCTCCTTCTC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01257.hp1 NA18962.hp1 HG01243.hp1 HG01257.hp1 NA18962.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0005g0079 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0005g0079	3	362	0.0083	27	c.78+ others(42): Show c.78+6993_78+6994insCCTTCTCCTTCTCCTTCTCCTTCTCCT	TNFRSF1B	ENSG00000028137.19	transcript	ENST00000376259.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNFRSF1B_chr1_12161991_12214220	12174160	T T	TCTTCTTC others(20): Show TCTTCTTCTCCTTCTCCTTCTCCTTCTC	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00741.hp1 HG01074.hp1 others(1): Show HG00738.hp1 HG00741.hp1 HG01074.hp1 NA19089.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0009 a0001c0001t0062 a0002c0002t0002 a0001c0001t0009 a0001c0001t0062 a0002c0002t0002	a0001c0001t0009g0001 a0001c0001t0062g0106 a0002c0002t0002g0042 a0001c0001t0009g0001 a0001c0001t0062g0106 a0002c0002t0002g0042	4	362	0.0111	27	c.78+ others(42): Show c.78+6996_78+6997insTCTCCTTCTCCTTCTCCTTCTCCTTCT	TNFRSF1B	ENSG00000028137.19	transcript	ENST00000376259.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNFRSF1B_chr1_12161991_12214220	12174160	T T	TCTTCTTC others(20): Show TCTTCTTCTTCTTCTCCTTCTCCTTCTC	intron_variant intron_variant	MODIFIER	HG01358.hp2 NA19063.hp2 HG01358.hp2 NA19063.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0007 a0001c0001 a0005c0007	a0001c0001t0061 a0005c0007t0014 a0001c0001t0061 a0005c0007t0014	a0001c0001t0061g0245 a0005c0007t0014g0346 a0001c0001t0061g0245 a0005c0007t0014g0346	2	362	0.0055	27	c.78+ others(42): Show c.78+6996_78+6997insTCTTCTTCTCCTTCTCCTTCTCCTTCT	TNFRSF1B	ENSG00000028137.19	transcript	ENST00000376259.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNFRSF1B_chr1_12161991_12214220	12174160	T T	TCTTCTTC others(20): Show TCTTCTTCTTCTTCTTCTTCTCCTTCTC	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0008 a0008	a0008c0010 a0008c0010	a0008c0010t0048 a0008c0010t0048	a0008c0010t0048g0298 a0008c0010t0048g0298	1	362	0.0028	27	c.78+ others(42): Show c.78+6996_78+6997insTCTTCTTCTTCTTCTCCTTCTCCTTCT	TNFRSF1B	ENSG00000028137.19	transcript	ENST00000376259.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNFRSF1B_chr1_12161991_12214220	12174160	T T	TCTTCTTC others(20): Show TCTTCTTCTTCTTCTTCTTCTTCTTCTC	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0040 a0001c0001t0004g0040	1	362	0.0028	27	c.78+ others(42): Show c.78+6996_78+6997insTCTTCTTCTTCTTCTTCTTCTCCTTCT	TNFRSF1B	ENSG00000028137.19	transcript	ENST00000376259.7	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNFRSF6B_chr20_63691652_63703684	63693654	A A	ACCACCTC others(20): Show ACCACCTCCACCACCACCTCCACCACCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01167.hp1 HG01167.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0007 a0003c0004t0002g0007	1	33	0.0303	27	c.-31 others(38): Show c.-3114_-3113insCCACCTCCACCACCACCTCCACCACCT	TNFRSF6B	ENSG00000243509.6	transcript	ENST00000369996.3	protein_coding		2997		chr20	TogoVar
TNFRSF9_chr1_7910871_7945839	7942206	T T	TGGAGGAG others(20): Show TGGAGGAGGAGGAGGAGGAGGAGGAGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0015 a0001c0001t0016g0015	1	384	0.0026	27	c.-15 others(38): Show c.-1534_-1508dupTCCTCCTCCTCCTCCTCCTCCTCCTCC	TNFRSF9	ENSG00000049249.10	transcript	ENST00000377507.8	protein_coding		1368		chr1	TogoVar
TNFSF8_chr9_114896145_114935591	114924425	T T	TATTGAAT others(20): Show TATTGAATTAATATTAACTCTCTTGGCA	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	404	0.0025	27	c.195 others(44): Show c.195+5657_195+5683dupTGCCAAGAGAGTTAATATTAATTCAAT	TNFSF8	ENSG00000106952.8	transcript	ENST00000223795.3	protein_coding	1/3			chr9	TogoVar
TNFSF9_chr19_6526026_6540924	6540203	A A	ATTTTTTT others(20): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18959.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0008 a0001c0001t0004g0008	1	386	0.0026	27	c.51 others(38): Show c.5137_*5138insTTTTTTTTTTTTTTTTTTTTTTTTTTT	TNFSF9	ENSG00000125657.5	transcript	ENST00000245817.5	protein_coding		4280		chr19	TogoVar
TNIK_chr3_171053414_171465405	171376730	C C	CAGATAGA others(20): Show CAGATAGATAGATAGATGATAGATAGAT	intron_variant intron_variant	MODIFIER	HG02886.hp1 NA18906.hp2 HG02886.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0066 a0001c0002t0002g0067 a0001c0001t0001g0066 a0001c0002t0002g0067	2	104	0.0192	27	c.58- others(42): Show c.58-7072_58-7046dupATCTATCTATCATCTATCTATCTATCT	TNIK	ENSG00000154310.17	transcript	ENST00000436636.7	protein_coding	1/32			chr3	TogoVar
TNIK_chr3_171053414_171465405	171376750	A A	AGATAGAT others(20): Show AGATAGATAGATAGATAGATAGATAGAT	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0021 a0001c0012t0021	a0001c0012t0021g0099 a0001c0012t0021g0099	1	104	0.0096	27	c.58- others(42): Show c.58-7092_58-7066dupATCTATCTATCTATCTATCTATCTATC	TNIK	ENSG00000154310.17	transcript	ENST00000436636.7	protein_coding	1/32			chr3	TogoVar
TNK1_chr17_7376089_7394742	7378277	G G	GAGAAAGA others(20): Show GAGAAAGAAAGAAAAAGAAAGAAAGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02965.hp2 HG03453.hp1 HG02965.hp2 HG03453.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0001 a0001c0013t0001	a0001c0013t0001g0004 a0001c0013t0001g0066 a0001c0013t0001g0004 a0001c0013t0001g0066	2	452	0.0044	27	c.-29 others(38): Show c.-2929_-2928insAGAAAGAAAGAAAAAGAAAGAAAGAAA	TNK1	ENSG00000174292.13	transcript	ENST00000688331.1	protein_coding		2811		chr17	TogoVar
TNKS_chr8_9550912_9787346	9717102	T T	TATATATA others(20): Show TATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19056.hp2 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0182 a0001c0001t0002g0182	1	272	0.0037	27	c.175 others(46): Show c.1750-3272_1750-3271insATATATATATATATATATATATATAT A	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	11/26			chr8	TogoVar
TNNI3K_chr1_74230387_74549428	74451690	T T	TTCTTTTC others(20): Show TTCTTTTCTTTTCTTTTCTTTTCTTTTC	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp2 HG02622.hp1 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0032 a0001c0001t0002g0167 a0001c0001t0001g0032 a0001c0001t0002g0167	2	194	0.0103	27	c.201 others(48): Show c.2012-11751_2012-11750insTCTTTTCTTTTCTTTTCTTTTCTT TTC	TNNI3K	ENSG00000116783.15	transcript	ENST00000326637.8	protein_coding	20/24			chr1	TogoVar
TNN_chr1_175062833_175153075	175109072	A A	ATTTTTTT others(20): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01123.hp1 NA20752.hp2 HG00099.hp1 HG01123.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0324 a0001c0001t0002g0122 a0001c0001t0002g0163 a0001c0001t0001g0324 a0001c0001t0002g0122 a0001c0001t0002g0163	3	374	0.0080	27	c.212 others(46): Show c.2120-7866_2120-7840dupTTTTTTTTTTTTTTTTTTTTTTTTTT T	TNN	ENSG00000120332.17	transcript	ENST00000239462.9	protein_coding	9/18		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNN_chr1_175062833_175153075	175112598	C C	CTTTTTTT others(20): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0001 a0001	a0001c0036 a0001c0036	a0001c0036t0001 a0001c0036t0001	a0001c0036t0001g0340 a0001c0036t0001g0340	1	374	0.0027	27	c.212 others(46): Show c.2120-4330_2120-4304dupTTTTTTTTTTTTTTTTTTTTTTTTTT T	TNN	ENSG00000120332.17	transcript	ENST00000239462.9	protein_coding	9/18		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNRC18_chr7_5301811_5428834	5389461	G G	GTTTTTTT others(20): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0016 a0016	a0016c0029 a0016c0029	a0016c0029t0004 a0016c0029t0004	a0016c0029t0004g0261 a0016c0029t0004g0261	1	306	0.0033	27	c.488 others(42): Show c.488-126_488-125insAAAAAAAAAAAAAAAAAAAAAAAAAAA	TNRC18	ENSG00000182095.15	transcript	ENST00000430969.6	protein_coding	4/29			chr7	TogoVar
TNRC6B_chr22_40172925_40340808	40173793	A A	ATATATAT others(20): Show ATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00423.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0137 a0001c0001t0137	a0001c0001t0137g0179 a0001c0001t0137g0179	1	308	0.0033	27	c.-43 others(38): Show c.-4343_-4342insTATATATATATATATATATATATATAT	TNRC6B	ENSG00000100354.21	transcript	ENST00000454349.7	protein_coding		4131		chr22	TogoVar
TNRC6B_chr22_40172925_40340808	40173794	T T	TATATATA others(20): Show TATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0185 a0001c0001t0004g0185	1	308	0.0033	27	c.-43 others(38): Show c.-4342_-4341insATATATATATATATATATATATATATA	TNRC6B	ENSG00000100354.21	transcript	ENST00000454349.7	protein_coding		4130		chr22	TogoVar
TNR_chr1_175310194_175748595	175331058	T T	TTTCTTTC others(20): Show TTTCTTTCTTTCTTTCTTTCTTTCCTTC	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0052 a0001c0009t0052	a0001c0009t0052g0107 a0001c0009t0052g0107	1	132	0.0076	27	c.363 others(44): Show c.3632-824_3632-823insGAAGGAAAGAAAGAAAGAAAGAAAGAA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	20/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175331062	T T	TTTCTTTC others(20): Show TTTCTTTCTTTCTTTCTTTCTTTCCTTC	intron_variant intron_variant	MODIFIER	NA18983.hp1 NA18983.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0018 a0001c0009t0018	a0001c0009t0018g0111 a0001c0009t0018g0111	1	132	0.0076	27	c.363 others(44): Show c.3632-828_3632-827insGAAGGAAAGAAAGAAAGAAAGAAAGAA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	20/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175417011	A A	AAAGAAAG others(20): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	NA18983.hp1 NA18983.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0018 a0001c0009t0018	a0001c0009t0018g0111 a0001c0009t0018g0111	1	132	0.0076	27	c.-63 others(46): Show c.-63-10235_-63-10234insCTTTCTTTCTTTCTTTCTTTCTTTCT T	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	2/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175647435	C C	CAAAAAAA others(20): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03486.hp1 HG03225.hp2 HG03486.hp1	a0004 a0008 a0004 a0008	a0004c0029 a0008c0018 a0004c0029 a0008c0018	a0004c0029t0030 a0008c0018t0059 a0004c0029t0030 a0008c0018t0059	a0004c0029t0030g0088 a0008c0018t0059g0087 a0004c0029t0030g0088 a0008c0018t0059g0087	2	132	0.0152	27	c.-16 others(48): Show c.-165+95790_-165+95791insTTTTTTTTTTTTTTTTTTTTTTTT TTT	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	1/22			chr1	TogoVar
TNS1_chr2_217794791_218007995	217946994	C C	CACACACA others(20): Show CACACACACACACACAGTTTTTACAGAG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0003 a0003	a0003c0068 a0003c0068	a0003c0068t0041 a0003c0068t0041	a0003c0068t0041g0060 a0003c0068t0041g0060	1	244	0.0041	27	c.187 others(46): Show c.187-26759_187-26758insCTCTGTAAAAACTGTGTGTGTGTGTG T	TNS1	ENSG00000079308.21	transcript	ENST00000682258.1	protein_coding	3/32			chr2	TogoVar
TNS3_chr7_47270154_47587111	47340115	A A	ATATATAT others(20): Show ATATATATATATATATTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0007 a0007	a0007c0062 a0007c0062	a0007c0062t0010 a0007c0062t0010	a0007c0062t0010g0032 a0007c0062t0010g0032	1	196	0.0051	27	c.265 others(46): Show c.2650+4639_2650+4640insAAAAAAAAAAAAATATATATATATAT A	TNS3	ENSG00000136205.18	transcript	ENST00000311160.14	protein_coding	20/30			chr7	TogoVar
TNS3_chr7_47270154_47587111	47389109	C C	CAGAAGCA others(20): Show CAGAAGCAGAAGAAGAAGAAGAAGAAGA	intron_variant intron_variant	MODIFIER	HG03041.hp2 NA18522.hp2 HG03041.hp2 NA18522.hp2	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0010 a0002c0008t0012 a0002c0008t0010 a0002c0008t0012	a0002c0008t0010g0033 a0002c0008t0012g0081 a0002c0008t0010g0033 a0002c0008t0012g0081	2	196	0.0102	27	c.102 others(46): Show c.1024+7690_1024+7691insTCTTCTTCTTCTTCTTCTTCTGCTTC T	TNS3	ENSG00000136205.18	transcript	ENST00000311160.14	protein_coding	16/30			chr7	TogoVar
TNS3_chr7_47270154_47587111	47389109	C C	CGGAAGCG others(20): Show CGGAAGCGGAAGCAGAAGAAGAAGAAGA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0001 a0002c0008t0001	a0002c0008t0001g0060 a0002c0008t0001g0060	1	196	0.0051	27	c.102 others(46): Show c.1024+7690_1024+7691insTCTTCTTCTTCTTCTGCTTCCGCTTC C	TNS3	ENSG00000136205.18	transcript	ENST00000311160.14	protein_coding	16/30			chr7	TogoVar
TNS3_chr7_47270154_47587111	47389154	A A	AAGAAGAA others(20): Show AAGAAGAAGAAGAAGAAGAAGAAGAAGC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0029 a0001c0013t0029	a0001c0013t0029g0190 a0001c0013t0029g0190	1	196	0.0051	27	c.102 others(46): Show c.1024+7645_1024+7646insGCTTCTTCTTCTTCTTCTTCTTCTTC T	TNS3	ENSG00000136205.18	transcript	ENST00000311160.14	protein_coding	16/30			chr7	TogoVar
TOB2_chr22_41428494_41451801	41449989	T T	TGTGTGTG others(20): Show TGTGTGTGTGTGTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0028 a0001c0001t0002g0028	1	360	0.0028	27	c.-36 others(38): Show c.-3674_-3673insCACACACACACACACACACACACACAC	TOB2	ENSG00000183864.5	transcript	ENST00000327492.4	protein_coding		3189		chr22	TogoVar
TOM1_chr22_35294894_35352973	35343736	C C	CACACCTA others(20): Show CACACCTACACACACACCACATGCATCT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG00597.hp2 others(94): Show HG00423.hp1 HG00423.hp2 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00733.hp1 HG00741.hp2 HG01074.hp2 HG01081.hp1 HG01099.hp1 HG01099.hp2 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp1 HG01192.hp1 HG01255.hp2 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01361.hp2 HG01515.hp2 HG01517.hp2 HG01891.hp1 HG01928.hp1 HG01943.hp2 HG01975.hp1 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp2 HG02027.hp1 HG02040.hp1 HG02074.hp2 HG02080.hp1 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp2 HG02155.hp1 HG02258.hp2 HG02300.hp1 HG02523.hp2 HG02630.hp1 HG02647.hp1 HG03209.hp1 HG03225.hp2 HG03491.hp1 HG03492.hp2 HG03654.hp1 HG03831.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18940.hp2 NA18941.hp1 NA18942.hp1 NA18945.hp1 NA18946.hp2 NA18952.hp2 NA18964.hp1 NA18969.hp1 NA18969.hp2 NA18971.hp2 NA18973.hp2 NA18974.hp2 NA18979.hp2 NA18982.hp1 NA18995.hp2 NA19000.hp1 NA19004.hp2 NA19010.hp2 NA19057.hp1 NA19057.hp2 NA19063.hp2 NA19065.hp2 NA19068.hp2 NA19070.hp1 NA19077.hp2 NA19079.hp2 NA19082.hp2 NA19083.hp1 NA19088.hp1 NA19088.hp2 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0006 others(2): Show a0001c0001 a0001c0004 a0001c0006 a0001c0007 a0001c0010	a0001c0001t0001 a0001c0004t0001 a0001c0006t0001 others(2): Show a0001c0001t0001 a0001c0004t0001 a0001c0006t0001 a0001c0007t0001 a0001c0010t0001	a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0014 others(86): Show a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0029 a0001c0001t0001g0034 a0001c0001t0001g0036 a0001c0001t0001g0039 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0059 a0001c0001t0001g0064 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0101 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0181 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0187 a0001c0001t0001g0195 a0001c0001t0001g0197 a0001c0001t0001g0211 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0220 a0001c0001t0001g0226 a0001c0001t0001g0238 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0259 a0001c0001t0001g0262 a0001c0001t0001g0263 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0270 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0278 a0001c0001t0001g0285 a0001c0001t0001g0286 a0001c0001t0001g0287 a0001c0001t0001g0288 a0001c0001t0001g0289 a0001c0001t0001g0290 a0001c0004t0001g0245 a0001c0004t0001g0250 a0001c0006t0001g0189 a0001c0007t0001g0165 a0001c0010t0001g0219	97	358	0.2710	27	c.122 others(46): Show c.1225-1972_1225-1971insACATGCATCTACACCTACACACACAC C	TOM1	ENSG00000100284.22	transcript	ENST00000449058.7	protein_coding	12/14		INFO_REALIGN_3_PRIME	chr22	TogoVar
TOM1_chr22_35294894_35352973	35343736	C C	CGCACCTA others(20): Show CGCACCTACACACACACCACATGCATCT	intron_variant intron_variant	MODIFIER	NA18970.hp1 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0127 a0001c0001t0001g0127	1	358	0.0028	27	c.122 others(46): Show c.1225-1989_1225-1988insGCACCTACACACACACCACATGCATC T	TOM1	ENSG00000100284.22	transcript	ENST00000449058.7	protein_coding	12/14			chr22	TogoVar
TOMM20L_chr14_58390930_58413702	58394213	A A	ATATATAT others(20): Show ATATATATATATATATTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0251 a0001c0001t0001g0251	1	362	0.0028	27	c.-17 others(38): Show c.-1745_-1744insTATATATATATATATTTTTTTTTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding		1716		chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58394213	A A	ATATATAT others(20): Show ATATATATATATATTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19030.hp1 NA19030.hp2 NA19030.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0205 a0001c0001t0001g0284 a0001c0001t0001g0205 a0001c0001t0001g0284	2	362	0.0055	27	c.-17 others(38): Show c.-1745_-1744insTATATATATATATTTTTTTTTTTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding		1716		chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58394213	A A	ATATATAT others(20): Show ATATATATTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0180 a0001c0001t0001g0180	1	362	0.0028	27	c.-17 others(38): Show c.-1745_-1744insTATATATTTTTTTTTTTTTTTTTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding		1716		chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(20): Show ATATATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG02129.hp1 HG02129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0203 a0001c0001t0001g0203	1	362	0.0028	27	c.262 others(44): Show c.262+1359_262+1360insATATATATATATATATATATATTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar

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