Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRC9_chr14_59915144_60071817	60067740	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01516.hp2 HG01517.hp1 NA18977.hp2 others(1): Show HG01516.hp2 HG01517.hp1 NA18977.hp2 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0010 a0001c0001t0003 a0001c0001t0010	a0001c0001t0003g0019 a0001c0001t0003g0260 a0001c0001t0003g0261 others(1): Show a0001c0001t0003g0019 a0001c0001t0003g0260 a0001c0001t0003g0261 a0001c0001t0010g0043	4	322	0.0124	28	c.43 others(39): Show c.4378_*4379insATATATATATATATATATATATATATAT	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding		924		chr14	TogoVar
LRRC9_chr14_59915144_60071817	60067760	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18945.hp2 NA19081.hp1 NA18945.hp2 NA19081.hp1	a0002 a0014 a0002 a0014	a0002c0003 a0014c0019 a0002c0003 a0014c0019	a0002c0003t0005 a0014c0019t0005 a0002c0003t0005 a0014c0019t0005	a0002c0003t0005g0202 a0014c0019t0005g0042 a0002c0003t0005g0202 a0014c0019t0005g0042	2	322	0.0062	28	c.43 others(39): Show c.4398_*4399insATATATATATATATATATATATATATAA	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding		944		chr14	TogoVar
LRRFIP2_chr3_37047626_37179582	37100387	C C	CATACATA others(21): Show CATACATACATGTGTATGTATATATACAT	intron_variant intron_variant	MODIFIER	NA18974.hp2 NA18974.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0210 a0001c0001t0001g0210	1	268	0.0037	28	c.873 others(45): Show c.873+2509_873+2536dupATGTATATATACATACACATGTATGTAT	LRRFIP2	ENSG00000093167.18	transcript	ENST00000336686.9	protein_coding	15/27			chr3	TogoVar
LRRFIP2_chr3_37047626_37179582	37165795	G G	GAGAAAGA others(21): Show GAGAAAGAAAGAAAAAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0003 a0003c0006t0003	a0003c0006t0003g0007 a0003c0006t0003g0007	1	268	0.0037	28	c.-56 others(45): Show c.-56+8743_-56+8744insTTCTTTCTTTCTTTTTTTCTTTCTTTCT	LRRFIP2	ENSG00000093167.18	transcript	ENST00000336686.9	protein_coding	1/27			chr3	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(21): Show CATATATATATATATCTATATATATATAT	intron_variant intron_variant	MODIFIER	HG02080.hp2 NA19057.hp2 HG02080.hp2 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0126 a0001c0001t0002g0156 a0001c0001t0002g0126 a0001c0001t0002g0156	2	228	0.0088	28	c.501 others(47): Show c.5016+4088_5016+4089insCTATATATATATATATATATATATAT AT	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(21): Show CATATATATATATATCTATATATCTATAT	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA19063.hp2 NA19065.hp1 others(1): Show NA18968.hp2 NA19063.hp2 NA19065.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0138 a0001c0001t0002g0139 a0001c0001t0002g0141 others(1): Show a0001c0001t0002g0138 a0001c0001t0002g0139 a0001c0001t0002g0141 a0001c0001t0002g0143	4	228	0.0175	28	c.501 others(47): Show c.5016+4088_5016+4089insCTATATATCTATATATATATATATAT AT	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85236840	T T	TATATCTA others(21): Show TATATCTATATATCTATATATATATATAG	intron_variant intron_variant	MODIFIER	NA19002.hp2 NA19002.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0140 a0001c0001t0002g0140	1	228	0.0044	28	c.501 others(47): Show c.5016+4088_5016+4089insCTATATATCTATATATATATATAGAT AT	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40355527	C C	CCCTCCCT others(21): Show CCCTCCCTCCCTCCCTCCCTCCCTTCCTT	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02074.hp1 HG02135.hp1 others(7): Show HG00621.hp1 HG02074.hp1 HG02135.hp1 NA18957.hp1 NA18959.hp2 NA18987.hp2 NA18992.hp1 NA19004.hp2 NA19060.hp2 NA19066.hp1	a0002 a0019 a0030 a0002 a0019 a0030	a0002c0001 a0019c0024 a0030c0038 a0002c0001 a0019c0024 a0030c0038	a0002c0001t0001 a0019c0024t0001 a0030c0038t0001 a0002c0001t0001 a0019c0024t0001 a0030c0038t0001	a0002c0001t0001g0024 a0002c0001t0001g0045 a0002c0001t0001g0058 others(7): Show a0002c0001t0001g0024 a0002c0001t0001g0045 a0002c0001t0001g0058 a0002c0001t0001g0060 a0002c0001t0001g0078 a0002c0001t0001g0089 a0002c0001t0001g0363 a0019c0024t0001g0121 a0019c0024t0001g0123 a0030c0038t0001g0122	10	382	0.0262	28	c.677 others(45): Show c.6771-585_6771-584insCCCTCCCTCCCTCCCTCCCTTCCTTCCT	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	45/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GACATATA others(21): Show GACATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG02165.hp2 NA18939.hp2 others(12): Show HG02074.hp2 HG02165.hp2 NA18939.hp2 NA18941.hp1 NA18943.hp1 NA18944.hp1 NA18962.hp2 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18989.hp1 NA18999.hp1 NA19070.hp1 NA19081.hp2 NA19086.hp1	a0001 a0001	a0001c0003 a0001c0006 a0001c0015 a0001c0003 a0001c0006 a0001c0015	a0001c0003t0001 a0001c0003t0003 a0001c0003t0020 others(3): Show a0001c0003t0001 a0001c0003t0003 a0001c0003t0020 a0001c0003t0023 a0001c0006t0003 a0001c0015t0001	a0001c0003t0001g0027 a0001c0003t0001g0115 a0001c0003t0001g0120 others(12): Show a0001c0003t0001g0027 a0001c0003t0001g0115 a0001c0003t0001g0120 a0001c0003t0001g0123 a0001c0003t0001g0124 a0001c0003t0001g0125 a0001c0003t0001g0129 a0001c0003t0001g0383 a0001c0003t0001g0388 a0001c0003t0001g0390 a0001c0003t0003g0313 a0001c0003t0020g0386 a0001c0003t0023g0065 a0001c0006t0003g0310 a0001c0015t0001g0169	15	422	0.0356	28	c.-27 others(47): Show c.-278-9838_-278-9837insCATATATATATATATATATATATATA TA	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GATATATA others(21): Show GATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00673.hp2 HG01346.hp1 others(16): Show HG00597.hp2 HG00673.hp2 HG01346.hp1 HG01934.hp2 HG02300.hp2 HG02622.hp1 HG03540.hp1 HG03834.hp2 HG03942.hp2 NA18939.hp1 NA18957.hp1 NA18959.hp2 NA18964.hp1 NA18975.hp1 NA18990.hp1 NA19004.hp1 NA19058.hp1 NA19058.hp2 NA19074.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0023 a0002c0009	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(9): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0009 a0001c0001t0015 a0001c0001t0070 a0001c0002t0002 a0001c0003t0017 a0001c0004t0005 a0001c0023t0061 a0002c0009t0002 a0002c0009t0006	a0001c0001t0001g0110 a0001c0001t0001g0179 a0001c0001t0003g0082 others(16): Show a0001c0001t0001g0110 a0001c0001t0001g0179 a0001c0001t0003g0082 a0001c0001t0003g0351 a0001c0001t0003g0355 a0001c0001t0003g0380 a0001c0001t0007g0012 a0001c0001t0007g0292 a0001c0001t0009g0012 a0001c0001t0015g0044 a0001c0001t0070g0305 a0001c0002t0002g0143 a0001c0002t0002g0209 a0001c0002t0002g0253 a0001c0003t0017g0339 a0001c0004t0005g0332 a0001c0023t0061g0074 a0002c0009t0002g0210 a0002c0009t0006g0379	19	422	0.0450	28	c.-27 others(47): Show c.-278-9838_-278-9811dupATATATATATATATATATATATATAT AT	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRTM3_chr10_66921036_67106551	66978542	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18945.hp1 NA18945.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0185 a0001c0001t0001g0185	1	294	0.0034	28	c.153 others(49): Show c.1536+50091_1536+50092insTATATATATATATATATATATATA TATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978544	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02129.hp1 HG02129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0183 a0001c0001t0001g0183	1	294	0.0034	28	c.153 others(49): Show c.1536+50093_1536+50094insTATATATATATATATATATATATA TATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978546	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA19057.hp2 NA18612.hp2 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0072 a0001c0001t0002g0188 a0001c0001t0001g0072 a0001c0001t0002g0188	2	294	0.0068	28	c.153 others(49): Show c.1536+50095_1536+50096insTATATATATATATATATATATATA TATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAAATA others(21): Show AAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18970.hp1 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0206 a0001c0001t0001g0206	1	294	0.0034	28	c.153 others(49): Show c.1536+50101_1536+50102insAAAATATATATATATATATATATA TATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76812673	C C	CTCTTTCT others(21): Show CTCTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03704.hp1 HG02055.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0012 a0001c0001t0002 a0001c0001t0012	a0001c0001t0002g0035 a0001c0001t0012g0128 a0001c0001t0002g0035 a0001c0001t0012g0128	2	128	0.0156	28	c.155 others(49): Show c.1552-63758_1552-63757insAAGAAAGAAAGAAAGAAAGAAAGA AAGA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76968370	A A	ACATACAC others(21): Show ACATACACACACATACATACACATGTGTG	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0007 a0001c0001t0002g0007	1	128	0.0078	28	c.155 others(51): Show c.1552-219455_1552-219454insCACACATGTGTATGTATGTGTG TGTATG	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTATATAT others(21): Show GTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02622.hp2 HG02723.hp2 others(1): Show HG02109.hp1 HG02622.hp2 HG02723.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0001 a0001c0001t0003 a0001c0001t0006	a0001c0001t0001g0038 a0001c0001t0001g0064 a0001c0001t0003g0117 others(1): Show a0001c0001t0001g0038 a0001c0001t0001g0064 a0001c0001t0003g0117 a0001c0001t0006g0034	4	128	0.0313	28	c.155 others(51): Show c.1552-230626_1552-230625insTATATATATATATATATATATA TATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTGTATAT others(21): Show GTGTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0084 a0001c0001t0007g0084	1	128	0.0078	28	c.155 others(51): Show c.1552-230626_1552-230625insTATATATATATATATATATATA TATACA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77306897	A A	ATTTTTTT others(21): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA19066.hp2 NA18522.hp2 NA19066.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0032 a0001c0001t0002g0051 a0001c0001t0001g0032 a0001c0001t0002g0051	2	128	0.0156	28	c.155 others(51): Show c.1551+211420_1551+211421insAAAAAAAAAAAAAAAAAAAAAA AAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362166	A A	AAAGGAAG others(21): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0047 a0001c0001t0003g0047	1	128	0.0078	28	c.155 others(51): Show c.1551+156151_1551+156152insCCTTCCTTCCTTCCTTCCTTCC TTCCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGAAAG others(21): Show AAAGAAAGAAAGAAAGAAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG03579.hp1 NA18950.hp1 NA18950.hp2 HG03579.hp1 NA18950.hp1 NA18950.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0023 a0001c0001t0003g0042 a0001c0001t0003g0112 a0001c0001t0001g0023 a0001c0001t0003g0042 a0001c0001t0003g0112	3	128	0.0234	28	c.155 others(51): Show c.1551+156147_1551+156148insCCTTCCTTCCTTTCTTTCTTTC TTTCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGAAAG others(21): Show AAAGAAAGAAAGAAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0052 a0001c0001t0004g0052	1	128	0.0078	28	c.155 others(51): Show c.1551+156147_1551+156148insCCTTCCTTCCTTCCTTTCTTTC TTTCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LSAMP_chr3_115797374_116450487	115808083	C C	CTCCTTCC others(21): Show CTCCTTCCTTCCTTCCTTCCTTCCTTCCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0069 a0001c0001t0069	a0001c0001t0069g0073 a0001c0001t0069g0073	1	104	0.0096	28	c.22 others(39): Show c.2206_*2233dupAGGAAGGAAGGAAGGAAGGAAGGAAGGA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	7/7	2233		chr3	TogoVar
LSAMP_chr3_115797374_116450487	115818790	T T	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02293.hp1 HG02523.hp1 HG01433.hp2 HG02293.hp1 HG02523.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0055 a0001c0001t0001 a0001c0001t0010 a0001c0001t0055	a0001c0001t0001g0033 a0001c0001t0010g0054 a0001c0001t0055g0019 a0001c0001t0001g0033 a0001c0001t0010g0054 a0001c0001t0055g0019	3	104	0.0289	28	c.920 others(45): Show c.920-8404_920-8377dupTATATATATATATATATATATATATATA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	6/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115839228	C C	CCCTTCCT others(21): Show CCCTTCCTTCTTTCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0057 a0001c0001t0060g0057	1	104	0.0096	28	c.919 others(45): Show c.919+2589_919+2616dupAAGGAAGGAAGGAAGGAAAGAAGGAAGG	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	6/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	115869269	G G	GGAGAGAG others(21): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0009 a0001c0002t0009	a0001c0002t0009g0090 a0001c0002t0009g0090	1	104	0.0096	28	c.515 others(47): Show c.515-16680_515-16653dupTCTCTCTCTCTCTCTCTCTCTCTCTC TC	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116102785	A A	ATCTATCT others(21): Show ATCTATCTATCTATCTATCTATCTATCTG	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01891.hp2 HG02572.hp2 others(4): Show HG01106.hp1 HG01891.hp2 HG02572.hp2 HG02622.hp1 HG02818.hp1 HG02886.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0022 a0001c0001t0026 others(4): Show a0001c0001t0002 a0001c0001t0022 a0001c0001t0026 a0001c0001t0033 a0001c0001t0057 a0001c0001t0063 a0001c0001t0066	a0001c0001t0002g0027 a0001c0001t0022g0074 a0001c0001t0026g0089 others(4): Show a0001c0001t0002g0027 a0001c0001t0022g0074 a0001c0001t0026g0089 a0001c0001t0033g0006 a0001c0001t0057g0008 a0001c0001t0063g0096 a0001c0001t0066g0005	7	104	0.0673	28	c.156 others(47): Show c.156-16230_156-16229insCAGATAGATAGATAGATAGATAGATA GA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116102785	A A	ATCTATCT others(21): Show ATCTATCTATCTATCTATCTATCTGTCTG	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0007 a0001c0001t0003g0007	1	104	0.0096	28	c.156 others(47): Show c.156-16230_156-16229insCAGACAGATAGATAGATAGATAGATA GA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273683	C C	CAGATATA others(21): Show CAGATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0097 a0001c0001t0017g0097	1	104	0.0096	28	c.155 others(49): Show c.155+171193_155+171194insATATATATATATATATATATATAT ATCT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273707	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02129.hp2 HG02293.hp2 others(2): Show HG01884.hp2 HG02129.hp2 HG02293.hp2 HG02451.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0016 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0016 a0001c0001t0025 a0001c0002t0056	a0001c0001t0001g0058 a0001c0001t0002g0014 a0001c0001t0016g0020 others(2): Show a0001c0001t0001g0058 a0001c0001t0002g0014 a0001c0001t0016g0020 a0001c0001t0025g0013 a0001c0002t0056g0062	5	104	0.0481	28	c.155 others(49): Show c.155+171169_155+171170insGTGTATATATATATATATATATAT ATAT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645511	C C	CACACACA others(21): Show CACACACACACACACACACACACAGACAG	intron_variant intron_variant	MODIFIER	HG01106.hp1 NA19089.hp1 HG01106.hp1 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0218 a0001c0001t0003g0130 a0001c0001t0002g0218 a0001c0001t0003g0130	2	408	0.0049	28	c.162 others(45): Show c.1623+652_1623+653insCTGTCTGTGTGTGTGTGTGTGTGTGTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(21): Show AAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0026 a0002c0002t0026	a0002c0002t0026g0232 a0002c0002t0026g0232	1	408	0.0025	28	c.227 others(45): Show c.227-1371_227-1370insATATATATATATATATTTTTTTTTTTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(21): Show AAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01255.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0083 a0002c0002t0083	a0002c0002t0083g0229 a0002c0002t0083g0229	1	408	0.0025	28	c.227 others(45): Show c.227-1371_227-1370insATATATATATATATATATTTTTTTTTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSM10_chr1_36388436_36402908	36402885	T T	TATATATA others(21): Show TATATATATATATTATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	432	0.0023	28	c.-51 others(39): Show c.-5144_-5143insTATATATATATATATAATATATATATAT	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4978		chr1	TogoVar
LSM10_chr1_36388436_36402908	36402885	T T	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18993.hp2 NA18997.hp2 NA19003.hp2 NA18993.hp2 NA18997.hp2 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0023 a0001c0001t0001g0055 a0001c0001t0001g0003 a0001c0001t0001g0023 a0001c0001t0001g0055	3	432	0.0069	28	c.-51 others(39): Show c.-5144_-5143insTATATATATATATATATATATATATATA	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4978		chr1	TogoVar
LSM10_chr1_36388436_36402908	36402900	T T	TATATATA others(21): Show TATATATATATATATATATACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp1 HG03195.hp1 HG02809.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	2	432	0.0046	28	c.-51 others(39): Show c.-5159_-5158insGTGTGTGTGTATATATATATATATATAT	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4993		chr1	TogoVar
LSM10_chr1_36388436_36402908	36402900	T T	TATATATA others(21): Show TATATATATATATATATATATATACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG01099.hp2 HG03041.hp2 HG00639.hp1 HG01099.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	3	432	0.0069	28	c.-51 others(39): Show c.-5159_-5158insGTGTGTATATATATATATATATATATAT	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4993		chr1	TogoVar
LSM10_chr1_36388436_36402908	36402900	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02523.hp2 HG03491.hp1 NA18954.hp2 others(1): Show HG02523.hp2 HG03491.hp1 NA18954.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0003 a0001c0001t0001g0006	4	432	0.0093	28	c.-51 others(39): Show c.-5159_-5158insGTATATATATATATATATATATATATAT	LSM10	ENSG00000181817.6	transcript	ENST00000315732.3	protein_coding		4993		chr1	TogoVar
LSM1_chr8_38158339_38181493	38180522	C C	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0017 a0001c0001t0003g0017	1	402	0.0025	28	c.-42 others(39): Show c.-4203_-4202insTTTTTTTTTTTTTTTTTTTTTTTTTTTT	LSM1	ENSG00000175324.10	transcript	ENST00000311351.9	protein_coding		4030		chr8	TogoVar
LSM6_chr4_146170718_146196535	146172164	C C	CTTCTTTC others(21): Show CTTCTTTCTTTCTTTCTTTCTTTCTTTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0002	1	376	0.0027	28	c.-36 others(39): Show c.-3658_-3657insTTCTTTCTTTCTTTCTTTCTTTCTTTCT	LSM6	ENSG00000164167.12	transcript	ENST00000296581.11	protein_coding		3553		chr4	TogoVar
LSP1_chr11_1848084_1897263	1849554	G G	GCGCGCGC others(21): Show GCGCGCGCACACACACACACACACACACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01123.hp1 HG01993.hp1 HG02630.hp1 HG01123.hp1 HG01993.hp1 HG02630.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0003 a0002c0001 a0004c0009 a0001c0003 a0002c0001 a0004c0009	a0001c0003t0001 a0002c0001t0001 a0004c0009t0001 a0001c0003t0001 a0002c0001t0001 a0004c0009t0001	a0001c0003t0001g0052 a0002c0001t0001g0082 a0004c0009t0001g0172 a0001c0003t0001g0052 a0002c0001t0001g0082 a0004c0009t0001g0172	3	360	0.0083	28	c.-35 others(39): Show c.-3591_-3590insCGCGCGCACACACACACACACACACACA	LSP1	ENSG00000130592.17	transcript	ENST00000311604.8	protein_coding		3529		chr11	TogoVar
LSR_chr19_35244002_35272964	35251843	C C	CTTTTTTT others(21): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01358.hp1 HG01934.hp1 others(17): Show HG01256.hp2 HG01358.hp1 HG01934.hp1 HG01952.hp1 HG02015.hp1 HG02015.hp2 HG02155.hp2 HG02523.hp2 HG03704.hp2 NA18747.hp1 NA18939.hp2 NA18957.hp1 NA18968.hp1 NA18986.hp2 NA19011.hp1 NA19059.hp1 NA19063.hp1 NA19081.hp2 NA19091.hp1 NA19240.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0003c0003 a0001c0002 a0003c0003	a0001c0002t0001 a0003c0003t0001 a0001c0002t0001 a0003c0003t0001	a0001c0002t0001g0127 a0003c0003t0001g0009 a0003c0003t0001g0045 others(7): Show a0001c0002t0001g0127 a0003c0003t0001g0009 a0003c0003t0001g0045 a0003c0003t0001g0046 a0003c0003t0001g0140 a0003c0003t0001g0141 a0003c0003t0001g0142 a0003c0003t0001g0143 a0003c0003t0001g0167 a0003c0003t0001g0168	20	438	0.0457	28	c.454 others(45): Show c.454+1193_454+1194insTTTTTTTTTTTTTTTTTTTTTTTTTTTT	LSR	ENSG00000105699.17	transcript	ENST00000605618.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr19	TogoVar
LSS_chr21_46183446_46233774	46229100	T T	TGGGGAGG others(21): Show TGGGGAGGTGGGGGCGGGGCTGGTGGTGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0220 a0003c0003t0001g0220	1	358	0.0028	28	c.-35 others(37): Show c.-356_-355insCCACCACCAGCCCCGCCCCCACCTCCCC	LSS	ENSG00000160285.15	transcript	ENST00000397728.8	protein_coding		327		chr21	TogoVar
LTBP1_chr2_32941953_33404509	33182687	G G	GAGATATA others(21): Show GAGATATATATATATATATATATACATAT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0048 a0001c0048	a0001c0048t0010 a0001c0048t0010	a0001c0048t0010g0092 a0001c0048t0010g0092	1	164	0.0061	28	c.120 others(47): Show c.1202-4168_1202-4167insGATATATATATATATATATATACATA TA	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	5/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33182687	G G	GAGATATA others(21): Show GAGATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0002 a0002	a0002c0030 a0002c0030	a0002c0030t0005 a0002c0030t0005	a0002c0030t0005g0151 a0002c0030t0005g0151	1	164	0.0061	28	c.120 others(47): Show c.1202-4168_1202-4167insGATATATATATATATATATATATATA TA	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	5/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33326640	A A	AATTTATT others(21): Show AATTTATTTATTTATTTATTTATTTATTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01243.hp1 HG01496.hp1 others(7): Show HG00438.hp2 HG01243.hp1 HG01496.hp1 HG02896.hp1 HG02922.hp2 HG03098.hp2 HG03130.hp2 HG03195.hp1 HG06807.hp2 NA18944.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0001c0008 others(6): Show a0001c0001 a0001c0005 a0001c0008 a0001c0018 a0001c0020 a0002c0009 a0002c0016 a0002c0029 a0002c0034	a0001c0001t0003 a0001c0005t0001 a0001c0008t0008 others(7): Show a0001c0001t0003 a0001c0005t0001 a0001c0008t0008 a0001c0018t0013 a0001c0020t0001 a0002c0009t0008 a0002c0016t0019 a0002c0016t0022 a0002c0029t0008 a0002c0034t0005	a0001c0001t0003g0129 a0001c0005t0001g0022 a0001c0008t0008g0075 others(7): Show a0001c0001t0003g0129 a0001c0005t0001g0022 a0001c0008t0008g0075 a0001c0018t0013g0061 a0001c0020t0001g0109 a0002c0009t0008g0077 a0002c0016t0019g0081 a0002c0016t0022g0071 a0002c0029t0008g0080 a0002c0034t0005g0149	10	164	0.0610	28	c.373 others(49): Show c.3730+11376_3730+11403dupATTTATTTATTTATTTATTTATTT ATTT	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	24/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP2_chr14_74493183_74617237	74516348	A A	ATTCTGGA others(21): Show ATTCTGGAATCCCTCCCTCCCTCCCTCCC	intron_variant intron_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0092 a0001c0001t0008g0092	1	282	0.0036	28	c.290 others(45): Show c.2908+473_2908+474insGGGAGGGAGGGAGGGAGGGATTCCAGAA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	18/35			chr14	TogoVar
LTBP2_chr14_74493183_74617237	74604164	C C	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp1 NA19043.hp2 HG03209.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0002g0058 a0001c0002t0001g0054 a0001c0001t0002g0058 a0001c0002t0001g0054	2	282	0.0071	28	c.495 others(43): Show c.495-460_495-459insTTTTTTTTTTTTTTTTTTTTTTTTTTTT	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	1/35			chr14	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(21): Show ATATATATATATATATATATATATATATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03579.hp1 NA18939.hp2 HG03579.hp1 NA18939.hp2	a0001 a0003 a0001 a0003	a0001c0004 a0003c0003 a0001c0004 a0003c0003	a0001c0004t0001 a0003c0003t0001 a0001c0004t0001 a0003c0003t0001	a0001c0004t0001g0016 a0003c0003t0001g0148 a0001c0004t0001g0016 a0003c0003t0001g0148	2	404	0.0050	28	c.29 others(39): Show c.2946_*2947insAATATATATATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(21): Show ATATATATATATATATATATATATATTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp2 HG02071.hp1 HG02273.hp2 others(1): Show HG00408.hp2 HG02071.hp1 HG02273.hp2 NA19003.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0004 a0003c0003 a0004c0005 a0001c0004 a0003c0003 a0004c0005	a0001c0004t0001 a0003c0003t0001 a0004c0005t0001 a0001c0004t0001 a0003c0003t0001 a0004c0005t0001	a0001c0004t0001g0002 a0001c0004t0001g0259 a0003c0003t0001g0005 others(1): Show a0001c0004t0001g0002 a0001c0004t0001g0259 a0003c0003t0001g0005 a0004c0005t0001g0004	4	404	0.0099	28	c.29 others(39): Show c.2946_*2947insAAAATATATATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar

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