Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
PCDHA11_chr5_140863957_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA18522.hp2 HG01884.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0003 a0001c0011t0002 a0001c0001t0003 a0001c0011t0002	a0001c0001t0003g0250 a0001c0011t0002g0123 a0001c0001t0003g0250 a0001c0011t0002g0123	2	260	0.0077	28	c.239 others(49): Show c.2392-32317_2392-32316insTATATATATATATATATATATATA CACA	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG03225.hp1 HG03486.hp1 HG01071.hp1 HG03225.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0017 a0001c0001 a0001c0017	a0001c0001t0006 a0001c0017t0016 a0001c0001t0006 a0001c0017t0016	a0001c0001t0006g0006 a0001c0001t0006g0090 a0001c0017t0016g0135 a0001c0001t0006g0006 a0001c0001t0006g0090 a0001c0017t0016g0135	3	260	0.0115	28	c.239 others(49): Show c.2392-32317_2392-32316insTATATATATATATATATATATATA TACA	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	260	0.0039	28	c.236 others(49): Show c.2368-37740_2368-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG02148.hp1 HG01934.hp2 HG02148.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0008 a0001c0002t0001 a0001c0002t0008	a0001c0002t0001g0253 a0001c0002t0008g0155 a0001c0002t0001g0253 a0001c0002t0008g0155	2	260	0.0077	28	c.236 others(49): Show c.2368-37720_2368-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01243.hp1 HG01106.hp1 HG01243.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0007 a0001c0001 a0005c0007	a0001c0001t0001 a0005c0007t0001 a0001c0001t0001 a0005c0007t0001	a0001c0001t0001g0243 a0005c0007t0001g0132 a0001c0001t0001g0243 a0005c0007t0001g0132	2	260	0.0077	28	c.236 others(49): Show c.2368-32317_2368-32316insTATATATATATATATATATATATA TATA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA18522.hp2 HG01884.hp2 NA18522.hp2	a0001 a0014 a0001 a0014	a0001c0001 a0014c0014 a0001c0001 a0014c0014	a0001c0001t0003 a0014c0014t0002 a0001c0001t0003 a0014c0014t0002	a0001c0001t0003g0005 a0014c0014t0002g0114 a0001c0001t0003g0005 a0014c0014t0002g0114	2	260	0.0077	28	c.236 others(49): Show c.2368-32317_2368-32316insTATATATATATATATATATATATA CACA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG03225.hp2 HG03486.hp1 HG01071.hp1 HG03225.hp2 HG03486.hp1	a0003 a0007 a0003 a0007	a0003c0006 a0003c0013 a0007c0025 a0003c0006 a0003c0013 a0007c0025	a0003c0006t0006 a0003c0013t0006 a0007c0025t0001 a0003c0006t0006 a0003c0013t0006 a0007c0025t0001	a0003c0006t0006g0087 a0003c0013t0006g0088 a0007c0025t0001g0133 a0003c0006t0006g0087 a0003c0013t0006g0088 a0007c0025t0001g0133	3	260	0.0115	28	c.236 others(49): Show c.2368-32317_2368-32316insTATATATATATATATATATATATA TACA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0113 a0001c0001t0001g0113	1	260	0.0039	28	c.239 others(49): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG02148.hp2 HG01934.hp2 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0238 a0001c0001t0008g0167 a0001c0001t0001g0238 a0001c0001t0008g0167	2	260	0.0077	28	c.239 others(49): Show c.2395-37720_2395-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01243.hp1 HG01106.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0136 a0001c0003t0001g0135 a0001c0001t0001g0136 a0001c0003t0001g0135	2	260	0.0077	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 NA18522.hp2 HG01884.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0003 a0001c0001t0002 a0001c0002t0003	a0001c0001t0002g0254 a0001c0002t0003g0080 a0001c0001t0002g0254 a0001c0002t0003g0080	2	260	0.0077	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA CACA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG02809.hp2 HG03225.hp2 others(1): Show HG01071.hp1 HG02809.hp2 HG03225.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0002t0007 a0001c0001t0001 a0001c0002t0001 a0001c0002t0007	a0001c0001t0001g0138 a0001c0002t0001g0102 a0001c0002t0007g0095 others(1): Show a0001c0001t0001g0138 a0001c0002t0001g0102 a0001c0002t0007g0095 a0001c0002t0007g0097	4	260	0.0154	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	200	0.0050	28	c.239 others(49): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0010 a0002c0002t0010	a0002c0002t0010g0132 a0002c0002t0010g0132	1	200	0.0050	28	c.239 others(49): Show c.2395-37720_2395-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01243.hp2 HG01106.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0064 a0001c0001t0001g0096 a0001c0001t0001g0064 a0001c0001t0001g0096	2	200	0.0100	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA18522.hp1 HG01884.hp2 NA18522.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0003 a0002c0002t0002 a0002c0002t0003	a0002c0002t0002g0195 a0002c0002t0003g0102 a0002c0002t0002g0195 a0002c0002t0003g0102	2	200	0.0100	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA CACA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02809.hp1 HG03225.hp1 others(1): Show HG01071.hp2 HG02809.hp1 HG03225.hp1 HG03486.hp2	a0002 a0003 a0004 a0002 a0003 a0004	a0002c0002 a0003c0003 a0004c0004 a0002c0002 a0003c0003 a0004c0004	a0002c0002t0005 a0003c0003t0001 a0004c0004t0001 a0002c0002t0005 a0003c0003t0001 a0004c0004t0001	a0002c0002t0005g0196 a0002c0002t0005g0197 a0003c0003t0001g0192 others(1): Show a0002c0002t0005g0196 a0002c0002t0005g0197 a0003c0003t0001g0192 a0004c0004t0001g0002	4	200	0.0200	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0103 a0001c0001t0001g0103	1	202	0.0050	28	c.238 others(49): Show c.2389-37740_2389-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG01934.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0009 a0002c0002t0009	a0002c0002t0009g0144 a0002c0002t0009g0144	1	202	0.0050	28	c.238 others(49): Show c.2389-37720_2389-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01243.hp2 HG01106.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0078 a0001c0001t0001g0085 a0001c0001t0001g0078 a0001c0001t0001g0085	2	202	0.0099	28	c.238 others(49): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 NA18522.hp1 HG01884.hp1 NA18522.hp1	a0003 a0007 a0003 a0007	a0003c0003 a0007c0012 a0003c0003 a0007c0012	a0003c0003t0003 a0007c0012t0002 a0003c0003t0003 a0007c0012t0002	a0003c0003t0003g0195 a0007c0012t0002g0076 a0003c0003t0003g0195 a0007c0012t0002g0076	2	202	0.0099	28	c.238 others(49): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA CACA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG02809.hp2 HG03225.hp2 others(1): Show HG01071.hp1 HG02809.hp2 HG03225.hp2 HG03486.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0003 a0004c0005 a0001c0001 a0003c0003 a0004c0005	a0001c0001t0001 a0003c0003t0006 a0004c0005t0001 a0001c0001t0001 a0003c0003t0006 a0004c0005t0001	a0001c0001t0001g0004 a0003c0003t0006g0070 a0003c0003t0006g0071 others(1): Show a0001c0001t0001g0004 a0003c0003t0006g0070 a0003c0003t0006g0071 a0004c0005t0001g0067	4	202	0.0198	28	c.238 others(49): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TACA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0026	1	208	0.0048	28	c.239 others(49): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG01934.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0010 a0002c0002t0010	a0002c0002t0010g0134 a0002c0002t0010g0134	1	208	0.0048	28	c.239 others(49): Show c.2395-37720_2395-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01243.hp2 HG01106.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0094 a0001c0001t0001g0021 a0001c0001t0001g0094	2	208	0.0096	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA18522.hp1 HG01884.hp2 NA18522.hp1	a0002 a0008 a0002 a0008	a0002c0007 a0008c0009 a0002c0007 a0008c0009	a0002c0007t0003 a0008c0009t0006 a0002c0007t0003 a0008c0009t0006	a0002c0007t0003g0192 a0008c0009t0006g0200 a0002c0007t0003g0192 a0008c0009t0006g0200	2	208	0.0096	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA CACA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02809.hp1 HG03225.hp2 others(1): Show HG01071.hp2 HG02809.hp1 HG03225.hp2 HG03486.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0003c0005 a0001c0001 a0003c0004 a0003c0005	a0001c0001t0001 a0003c0004t0001 a0003c0005t0007 a0001c0001t0001 a0003c0004t0001 a0003c0005t0007	a0001c0001t0001g0100 a0003c0004t0001g0205 a0003c0005t0007g0196 others(1): Show a0001c0001t0001g0100 a0003c0004t0001g0205 a0003c0005t0007g0196 a0003c0005t0007g0197	4	208	0.0192	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0092 a0005c0005t0001g0092	1	212	0.0047	28	c.238 others(49): Show c.2386-37740_2386-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0137 a0001c0001t0010g0137	1	212	0.0047	28	c.238 others(49): Show c.2386-37720_2386-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01243.hp2 HG01106.hp1 HG01243.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0015 a0003c0003t0001g0085 a0003c0003t0001g0015 a0003c0003t0001g0085	2	212	0.0094	28	c.238 others(49): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TATA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA18522.hp2 HG01884.hp2 NA18522.hp2	a0004 a0009 a0004 a0009	a0004c0004 a0009c0011 a0004c0004 a0009c0011	a0004c0004t0006 a0009c0011t0012 a0004c0004t0006 a0009c0011t0012	a0004c0004t0006g0101 a0009c0011t0012g0212 a0004c0004t0006g0101 a0009c0011t0012g0212	2	212	0.0094	28	c.238 others(49): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA CACA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02809.hp2 HG03225.hp1 others(1): Show HG01071.hp2 HG02809.hp2 HG03225.hp1 HG03486.hp2	a0003 a0004 a0003 a0004	a0003c0007 a0004c0004 a0003c0007 a0004c0004	a0003c0007t0001 a0004c0004t0001 a0004c0004t0008 a0003c0007t0001 a0004c0004t0001 a0004c0004t0008	a0003c0007t0001g0115 a0004c0004t0001g0108 a0004c0004t0008g0097 others(1): Show a0003c0007t0001g0115 a0004c0004t0001g0108 a0004c0004t0008g0097 a0004c0004t0008g0098	4	212	0.0189	28	c.238 others(49): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TACA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0133 a0001c0001t0001g0133	1	220	0.0046	28	c.235 others(49): Show c.2353-37740_2353-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01243.hp2 HG01106.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0049 a0001c0001t0001g0205 a0001c0001t0001g0049 a0001c0001t0001g0205	2	220	0.0091	28	c.235 others(49): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TATA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 NA18522.hp1 HG01884.hp1 NA18522.hp1	a0003 a0010 a0003 a0010	a0003c0003 a0010c0018 a0003c0003 a0010c0018	a0003c0003t0013 a0010c0018t0005 a0003c0003t0013 a0010c0018t0005	a0003c0003t0013g0112 a0010c0018t0005g0123 a0003c0003t0013g0112 a0010c0018t0005g0123	2	220	0.0091	28	c.235 others(49): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA CACA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG02809.hp2 HG03225.hp2 others(1): Show HG01071.hp1 HG02809.hp2 HG03225.hp2 HG03486.hp2	a0001 a0003 a0001 a0003	a0001c0007 a0003c0003 a0003c0004 a0001c0007 a0003c0003 a0003c0004	a0001c0007t0001 a0003c0003t0008 a0003c0004t0003 a0001c0007t0001 a0003c0003t0008 a0003c0004t0003	a0001c0007t0001g0005 a0003c0003t0008g0188 a0003c0003t0008g0189 others(1): Show a0001c0007t0001g0005 a0003c0003t0008g0188 a0003c0003t0008g0189 a0003c0004t0003g0109	4	220	0.0182	28	c.235 others(49): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TACA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0031	1	236	0.0042	28	c.239 others(49): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG01934.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0008 a0001c0002t0008	a0001c0002t0008g0165 a0001c0002t0008g0165	1	236	0.0042	28	c.239 others(49): Show c.2395-37720_2395-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01243.hp2 HG01106.hp1 HG01243.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0001 a0001c0001t0001 a0002c0003t0001	a0001c0001t0001g0054 a0002c0003t0001g0002 a0001c0001t0001g0054 a0002c0003t0001g0002	2	236	0.0085	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA18522.hp2 HG01884.hp2 NA18522.hp2	a0003 a0014 a0003 a0014	a0003c0004 a0014c0013 a0003c0004 a0014c0013	a0003c0004t0002 a0014c0013t0003 a0003c0004t0002 a0014c0013t0003	a0003c0004t0002g0134 a0014c0013t0003g0136 a0003c0004t0002g0134 a0014c0013t0003g0136	2	236	0.0085	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA CACA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02809.hp1 HG03225.hp1 others(1): Show HG01071.hp2 HG02809.hp1 HG03225.hp1 HG03486.hp2	a0001 a0003 a0001 a0003	a0001c0006 a0003c0004 a0001c0006 a0003c0004	a0001c0006t0001 a0003c0004t0001 a0003c0004t0006 a0001c0006t0001 a0003c0004t0001 a0003c0004t0006	a0001c0006t0001g0007 a0003c0004t0001g0122 a0003c0004t0006g0139 others(1): Show a0001c0006t0001g0007 a0003c0004t0001g0122 a0003c0004t0006g0139 a0003c0004t0006g0141	4	236	0.0170	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0098 a0002c0001t0001g0098	1	248	0.0040	28	c.235 others(49): Show c.2356-37740_2356-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG02148.hp2 HG01934.hp2 HG02148.hp2	a0001 a0001	a0001c0002 a0001c0028 a0001c0002 a0001c0028	a0001c0002t0008 a0001c0028t0001 a0001c0002t0008 a0001c0028t0001	a0001c0002t0008g0153 a0001c0028t0001g0202 a0001c0002t0008g0153 a0001c0028t0001g0202	2	248	0.0081	28	c.235 others(49): Show c.2356-37720_2356-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01243.hp1 HG01106.hp2 HG01243.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0025 a0002c0001t0001g0060 a0002c0001t0001g0025 a0002c0001t0001g0060	2	248	0.0081	28	c.235 others(49): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TATA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 NA18522.hp2 HG01884.hp1 NA18522.hp2	a0001 a0001	a0001c0003 a0001c0012 a0001c0003 a0001c0012	a0001c0003t0002 a0001c0012t0003 a0001c0003t0002 a0001c0012t0003	a0001c0003t0002g0146 a0001c0012t0003g0127 a0001c0003t0002g0146 a0001c0012t0003g0127	2	248	0.0081	28	c.235 others(49): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA CACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG02809.hp1 HG03225.hp2 others(1): Show HG01071.hp1 HG02809.hp1 HG03225.hp2 HG03486.hp1	a0001 a0007 a0001 a0007	a0001c0003 a0001c0004 a0007c0009 a0001c0003 a0001c0004 a0007c0009	a0001c0003t0006 a0001c0004t0001 a0007c0009t0001 a0001c0003t0006 a0001c0004t0001 a0007c0009t0001	a0001c0003t0006g0141 a0001c0003t0006g0142 a0001c0004t0001g0129 others(1): Show a0001c0003t0006g0141 a0001c0003t0006g0142 a0001c0004t0001g0129 a0007c0009t0001g0005	4	248	0.0161	28	c.235 others(49): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140941202	C C	CCTTTCTT others(21): Show CCTTTCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0152 a0004c0004t0001g0152	1	258	0.0039	28	c.239 others(49): Show c.2395-37740_2395-37739insCCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140941214	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG02148.hp2 HG01934.hp2 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0084 a0001c0001t0009g0086 a0001c0001t0001g0084 a0001c0001t0009g0086	2	258	0.0078	28	c.239 others(49): Show c.2395-37720_2395-37693dupTTCTTTCTTTCTTTCTTTCTTTCT TTCT	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946611	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01243.hp2 HG01106.hp1 HG01243.hp2	a0003 a0005 a0003 a0005	a0003c0003 a0005c0005 a0003c0003 a0005c0005	a0003c0003t0001 a0005c0005t0001 a0003c0003t0001 a0005c0005t0001	a0003c0003t0001g0016 a0005c0005t0001g0009 a0003c0003t0001g0016 a0005c0005t0001g0009	2	258	0.0078	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(21): Show TATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 NA18522.hp2 HG01884.hp1 NA18522.hp2	a0006 a0006	a0006c0006 a0006c0015 a0006c0006 a0006c0015	a0006c0006t0002 a0006c0015t0003 a0006c0006t0002 a0006c0015t0003	a0006c0006t0002g0245 a0006c0015t0003g0170 a0006c0006t0002g0245 a0006c0015t0003g0170	2	258	0.0078	28	c.239 others(49): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA CACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr5	TogoVar

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