Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAAAATA others(21): Show AAAAAATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02738.hp1 NA19074.hp1 HG02738.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	432	0.0046	28	c.-80 others(37): Show c.-805_-804insATATATATATATATATATATATATTTTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AAAATATA others(21): Show AAAATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	432	0.0023	28	c.-80 others(37): Show c.-805_-804insATATATATATATATATATATATATATTT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7732906	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0008 a0001c0004t0001g0008	1	432	0.0023	28	c.-80 others(37): Show c.-805_-804insATATATATATATATATATATATATATAT	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		797		chr19	TogoVar
CLEC4G_chr19_7723957_7737110	7736445	T T	TTTCCTTC others(21): Show TTTCCTTCCTTCCTTCCTTCCTTCCTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp2 HG02257.hp1 HG01891.hp2 HG02257.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0006 a0001c0003t0001g0006	2	432	0.0046	28	c.-43 others(39): Show c.-4344_-4343insGGAAGGAAGGAAGGAAGGAAGGAAGGAA	CLEC4G	ENSG00000182566.15	transcript	ENST00000328853.11	protein_coding		4336		chr19	TogoVar
CLEC7A_chr12_10111777_10135199	10115912	C C	CTTTTCTG others(21): Show CTTTTCTGTCTCTTGGAAAAGTGTGGATG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0030 a0001c0001t0002g0030	1	450	0.0022	28	c.25 others(39): Show c.2545_*2546insCATCCACACTTTTCCAAGAGACAGAAAA	CLEC7A	ENSG00000172243.18	transcript	ENST00000304084.13	protein_coding		864		chr12	TogoVar
CLIC2_chrX_155271211_155339614	155297884	A A	AAAAAAAA others(21): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0020	1	258	0.0039	28	c.293 others(43): Show c.293+900_293+901insCTTTTTTTTTTTTTTTTTTTTTTTTTTT	CLIC2	ENSG00000155962.13	transcript	ENST00000369449.7	protein_coding	3/5			chrX	TogoVar
CLIC4_chr1_24740447_24849321	24820067	G G	GTGTATAT others(21): Show GTGTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0324 a0001c0001t0001g0324	1	344	0.0029	28	c.308 others(45): Show c.308+5849_308+5850insGTATATATATATATATATATATATATAT	CLIC4	ENSG00000169504.15	transcript	ENST00000374379.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CLIC4_chr1_24740447_24849321	24820067	G G	GTGTGTAT others(21): Show GTGTGTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG04204.hp1 NA18992.hp1 others(1): Show HG03017.hp2 HG04204.hp1 NA18992.hp1 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0044 a0001c0001t0001g0048 others(1): Show a0001c0001t0001g0010 a0001c0001t0001g0044 a0001c0001t0001g0048 a0001c0001t0001g0057	4	344	0.0116	28	c.308 others(45): Show c.308+5849_308+5850insGTGTATATATATATATATATATATATAT	CLIC4	ENSG00000169504.15	transcript	ENST00000374379.9	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CLIC5_chr6_45893456_46020860	45958441	T T	TACACACA others(21): Show TACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19002.hp1 NA19011.hp2 NA19057.hp1 NA19002.hp1 NA19011.hp2 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0318 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0318	3	340	0.0088	28	c.64- others(43): Show c.64-3198_64-3197insGTGTGTGTGTGTGTGTGTGTGTGTGTGT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	1/5			chr6	TogoVar
CLIC5_chr6_45893456_46020860	45958443	T T	TACACACA others(21): Show TACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG03486.hp1 NA18961.hp1 HG00642.hp2 HG03486.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0022 a0001c0001t0001 a0001c0001t0003 a0001c0001t0022	a0001c0001t0001g0303 a0001c0001t0003g0237 a0001c0001t0022g0024 a0001c0001t0001g0303 a0001c0001t0003g0237 a0001c0001t0022g0024	3	340	0.0088	28	c.64- others(43): Show c.64-3200_64-3199insGTGTGTGTGTGTGTGTGTGTGTGTGTGT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	1/5			chr6	TogoVar
CLIC5_chr6_45893456_46020860	45958445	T T	TACACACA others(21): Show TACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0292 a0001c0001t0007g0292	1	340	0.0029	28	c.64- others(43): Show c.64-3202_64-3201insGTGTGTGTGTGTGTGTGTGTGTGTGTGT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	1/5			chr6	TogoVar
CLIC5_chr6_45893456_46020860	45958445	T T	TATACACA others(21): Show TATACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01169.hp2 HG01515.hp1 others(6): Show HG00099.hp2 HG01169.hp2 HG01515.hp1 HG01517.hp1 NA18942.hp2 NA18953.hp1 NA18995.hp1 NA19068.hp2 NA19079.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0003c0005t0002	a0001c0001t0001g0080 a0001c0001t0001g0312 a0001c0001t0001g0313 others(6): Show a0001c0001t0001g0080 a0001c0001t0001g0312 a0001c0001t0001g0313 a0001c0001t0001g0329 a0001c0001t0001g0330 a0001c0001t0002g0106 a0001c0001t0006g0072 a0001c0001t0006g0114 a0003c0005t0002g0052	9	340	0.0265	28	c.64- others(43): Show c.64-3202_64-3201insGTGTGTGTGTGTGTGTGTGTGTGTGTAT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	1/5			chr6	TogoVar
CLIC5_chr6_45893456_46020860	45958447	T T	TACACACA others(21): Show TACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG03831.hp2 HG01934.hp1 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0023 a0001c0001t0004g0113 a0001c0001t0004g0023 a0001c0001t0004g0113	2	340	0.0059	28	c.64- others(43): Show c.64-3204_64-3203insGTGTGTGTGTGTGTGTGTGTGTGTGTGT	CLIC5	ENSG00000112782.19	transcript	ENST00000339561.12	protein_coding	1/5			chr6	TogoVar
CLIC6_chr21_34663994_34723223	34716862	T T	TCTCTCTC others(21): Show TCTCTCTCTATCACACACACACACACACA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0053 a0004c0006t0053	a0004c0006t0053g0192 a0004c0006t0053g0192	1	312	0.0032	28	c.38 others(37): Show c.381_*382insTCTCTCTATCACACACACACACACACAC	CLIC6	ENSG00000159212.13	transcript	ENST00000349499.3	protein_coding	6/6	382	INFO_REALIGN_3_PRIME	chr21	TogoVar
CLIP1_chr12_122266469_122427669	122379943	T T	TAAAAAAA others(21): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0193 a0001c0001t0001g0193	1	234	0.0043	28	c.85+ others(41): Show c.85+424_85+425insTTTTTTTTTTTTTTTTTTTTTTTTTTTT	CLIP1	ENSG00000130779.22	transcript	ENST00000620786.5	protein_coding	2/25			chr12	TogoVar
CLIP2_chr7_74284407_74410935	74361176	T T	TTTCCTTC others(21): Show TTTCCTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00323.hp2 others(23): Show HG00099.hp2 HG00140.hp1 HG00323.hp2 HG00438.hp2 HG00642.hp1 HG01168.hp2 HG02055.hp1 HG02071.hp1 HG02155.hp2 HG02572.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp2 HG03540.hp1 HG03654.hp2 HG03710.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG06807.hp1 NA18747.hp1 NA18945.hp1 NA19004.hp1 NA19043.hp1 NA19056.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0006 a0001c0001 a0001c0002 a0002c0006	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0015 a0002c0006t0002	a0001c0001t0001g0035 a0001c0001t0001g0053 a0001c0001t0001g0092 others(23): Show a0001c0001t0001g0035 a0001c0001t0001g0053 a0001c0001t0001g0092 a0001c0001t0003g0055 a0001c0001t0005g0206 a0001c0002t0001g0007 a0001c0002t0001g0094 a0001c0002t0001g0102 a0001c0002t0001g0122 a0001c0002t0001g0159 a0001c0002t0001g0163 a0001c0002t0001g0170 a0001c0002t0001g0186 a0001c0002t0001g0200 a0001c0002t0001g0231 a0001c0002t0001g0237 a0001c0002t0001g0245 a0001c0002t0001g0266 a0001c0002t0002g0140 a0001c0002t0002g0252 a0001c0002t0002g0257 a0001c0002t0003g0065 a0001c0002t0005g0168 a0001c0002t0005g0240 a0001c0002t0015g0275 a0002c0006t0002g0089	26	278	0.0935	28	c.131 others(45): Show c.1319+903_1319+930dupTTCCTTCCTTCCTTCCTTCCTTCCTTCC	CLIP2	ENSG00000106665.16	transcript	ENST00000223398.11	protein_coding	7/16		INFO_REALIGN_3_PRIME	chr7	TogoVar
CLK2_chr1_155257868_155278504	155265592	A A	AATAAATA others(21): Show AATAAATAAATAAATAAATAAATAAATAT	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG01884.hp2 HG01891.hp1 others(6): Show HG00280.hp2 HG01884.hp2 HG01891.hp1 HG01934.hp2 HG02615.hp1 HG03041.hp2 HG03486.hp2 HG03654.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0065 others(2): Show a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0065 a0001c0001t0001g0084 a0001c0001t0001g0106	9	331	0.0272	28	c.933 others(43): Show c.933+267_933+268insATATTTATTTATTTATTTATTTATTTAT	CLK2	ENSG00000176444.19	transcript	ENST00000368361.9	protein_coding	8/12			chr1	TogoVar
CLMN_chr14_95176940_95324908	95245180	A A	ATATATAT others(21): Show ATATATATATATATAATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18974.hp2 NA18974.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0242 a0001c0003t0002g0242	1	276	0.0036	28	c.83- others(45): Show c.83-15075_83-15048dupATATATATATATATTATATATATATATA	CLMN	ENSG00000165959.12	transcript	ENST00000298912.9	protein_coding	1/12			chr14	TogoVar
CLMN_chr14_95176940_95324908	95245211	T T	TATATATA others(21): Show TATATATATATATAATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01943.hp1 HG01257.hp1 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0256 a0001c0001t0006g0229 a0001c0001t0001g0256 a0001c0001t0006g0229	2	276	0.0073	28	c.83- others(45): Show c.83-15079_83-15078insTATATATATATATATTATATATATATAT	CLMN	ENSG00000165959.12	transcript	ENST00000298912.9	protein_coding	1/12			chr14	TogoVar
CLMN_chr14_95176940_95324908	95245254	A A	ATTATATA others(21): Show ATTATATATATATTATATATATATATAAT	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG03041.hp1 HG02647.hp2 HG03041.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0027 a0002c0004t0008 a0001c0001t0027 a0002c0004t0008	a0001c0001t0027g0201 a0002c0004t0008g0157 a0001c0001t0027g0201 a0002c0004t0008g0157	2	276	0.0073	28	c.83- others(45): Show c.83-15122_83-15121insATTATATATATATATAATATATATATAA	CLMN	ENSG00000165959.12	transcript	ENST00000298912.9	protein_coding	1/12			chr14	TogoVar
CLMN_chr14_95176940_95324908	95293326	T T	TTTCCTCC others(21): Show TTTCCTCCCTCCCTCCTTCCTTCCCTCCC	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG02074.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0167 a0001c0003t0002g0167	1	276	0.0036	28	c.82+ others(45): Show c.82+26384_82+26385insGGGAGGGAAGGAAGGAGGGAGGGAGGAA	CLMN	ENSG00000165959.12	transcript	ENST00000298912.9	protein_coding	1/12			chr14	TogoVar
CLMP_chr11_123064872_123200248	123118995	T T	TTCTCTCT others(21): Show TTCTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0039	a0001c0001t0039g0161 a0001c0001t0039g0161	1	254	0.0039	28	c.29- others(45): Show c.29-21044_29-21043insGAGAGAGAGAGAGAGAGAGAGAGAGAGA	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLMP_chr11_123064872_123200248	123129346	A A	AATATATC others(21): Show AATATATCATATGATATATTATATAAAAT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01346.hp1 HG02165.hp1 others(1): Show HG00738.hp1 HG01346.hp1 HG02165.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0029 a0001c0001t0016 a0001c0001t0029	a0001c0001t0016g0018 a0001c0001t0016g0051 a0001c0001t0016g0086 others(1): Show a0001c0001t0016g0018 a0001c0001t0016g0051 a0001c0001t0016g0086 a0001c0001t0029g0194	4	254	0.0158	28	c.29- others(45): Show c.29-31422_29-31395dupATTTTATATAATATATCATATGATATAT	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLMP_chr11_123064872_123200248	123150416	T T	TAAGAAAG others(21): Show TAAGAAAGAAAGAAAGAAAGAAAGAAAGA	intron_variant intron_variant	MODIFIER	HG02647.hp1 NA18952.hp2 HG02647.hp1 NA18952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0036 a0001c0001t0011 a0001c0001t0036	a0001c0001t0011g0092 a0001c0001t0036g0114 a0001c0001t0011g0092 a0001c0001t0036g0114	2	254	0.0079	28	c.28+ others(45): Show c.28+44469_28+44496dupTCTTTCTTTCTTTCTTTCTTTCTTTCTT	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLMP_chr11_123064872_123200248	123150480	A A	AAAGAAAG others(21): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGG	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02886.hp2 NA18994.hp2 others(1): Show HG02486.hp1 HG02886.hp2 NA18994.hp2 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0020 a0001c0001t0001 a0001c0001t0007 a0001c0001t0020	a0001c0001t0001g0078 a0001c0001t0001g0082 a0001c0001t0007g0182 others(1): Show a0001c0001t0001g0078 a0001c0001t0001g0082 a0001c0001t0007g0182 a0001c0001t0020g0245	4	254	0.0158	28	c.28+ others(45): Show c.28+44432_28+44433insCCTTTCTTTCTTTCTTTCTTTCTTTCTT	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLMP_chr11_123064872_123200248	123150480	A A	AAAGAAAG others(21): Show AAAGAAAGAAAGAAAGAAAGAAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG02055.hp2 NA18992.hp2 HG01071.hp1 HG02055.hp2 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0028 a0001c0001t0001 a0001c0001t0004 a0001c0001t0028	a0001c0001t0001g0023 a0001c0001t0004g0066 a0001c0001t0028g0221 a0001c0001t0001g0023 a0001c0001t0004g0066 a0001c0001t0028g0221	3	254	0.0118	28	c.28+ others(45): Show c.28+44432_28+44433insCCTTCCTTTCTTTCTTTCTTTCTTTCTT	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLMP_chr11_123064872_123200248	123150480	A A	AAAGAAAG others(21): Show AAAGAAAGAAAGAAAGAAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0212 a0001c0001t0002g0212	1	254	0.0039	28	c.28+ others(45): Show c.28+44432_28+44433insCCTTCCTTCCTTTCTTTCTTTCTTTCTT	CLMP	ENSG00000166250.12	transcript	ENST00000448775.4	protein_coding	1/6			chr11	TogoVar
CLN8_chr8_1758789_1791570	1771929	A A	ATATTTAT others(21): Show ATATTTATTTATTTATTTATTTATTTATT	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0106 a0001c0007t0106	a0001c0007t0106g0143 a0001c0007t0106g0143	1	413	0.0024	28	c.543 others(43): Show c.543+353_543+354insATTTATTTATTTATTTATTTATTTATTT	CLN8	ENSG00000182372.10	transcript	ENST00000331222.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr8	TogoVar
CLNK_chr4_10481395_10689768	10535213	G G	GAGAAAGA others(21): Show GAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG02155.hp1 HG02293.hp2 others(4): Show HG00140.hp2 HG02155.hp1 HG02293.hp2 NA18946.hp1 NA18960.hp2 NA18962.hp1 NA18998.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0038 a0001c0001t0073 a0001c0001t0077 a0002c0002t0011	a0001c0001t0001g0039 a0001c0001t0002g0079 a0001c0001t0006g0149 others(4): Show a0001c0001t0001g0039 a0001c0001t0002g0079 a0001c0001t0006g0149 a0001c0001t0038g0214 a0001c0001t0073g0128 a0001c0001t0077g0133 a0002c0002t0011g0045	7	320	0.0219	28	c.603 others(45): Show c.603-2958_603-2931dupTTCTTTCTTTCTTTCTTTCTTTCTTTCT	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	11/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10537702	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00733.hp2 HG00741.hp1 others(10): Show HG00408.hp2 HG00733.hp2 HG00741.hp1 HG01071.hp2 HG01167.hp2 HG01169.hp1 HG01517.hp2 HG02165.hp2 HG02572.hp2 HG02647.hp1 HG02886.hp2 HG02922.hp1 NA19001.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0002c0002 a0008c0013 a0001c0001 a0002c0002 a0008c0013	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0022 a0001c0001t0023 a0002c0002t0006 a0008c0013t0001	a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0013 others(10): Show a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0013 a0001c0001t0002g0132 a0001c0001t0002g0286 a0001c0001t0003g0237 a0001c0001t0004g0126 a0001c0001t0007g0229 a0001c0001t0007g0230 a0001c0001t0022g0171 a0001c0001t0023g0195 a0002c0002t0006g0047 a0008c0013t0001g0280	13	320	0.0406	28	c.602 others(45): Show c.602+2791_602+2792insAAAGAAAGAAAGAAAGAAAGAAAGAAAG	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	11/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10537706	C C	CCTTCCTT others(21): Show CCTTCCTTCCTTCCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02040.hp1 NA18989.hp1 HG02040.hp1 NA18989.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0029 a0001c0001t0001 a0001c0001t0029	a0001c0001t0001g0024 a0001c0001t0029g0257 a0001c0001t0001g0024 a0001c0001t0029g0257	2	320	0.0063	28	c.602 others(45): Show c.602+2787_602+2788insAAAGAAAGAAAGAAAGGAAGGAAGGAAG	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	11/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10537706	C C	CCTTCCTT others(21): Show CCTTCCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02976.hp1 NA19062.hp2 NA19074.hp1 HG02976.hp1 NA19062.hp2 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0001 a0001c0001t0002 a0001c0010t0005 a0001c0001t0001 a0001c0001t0002 a0001c0010t0005	a0001c0001t0001g0138 a0001c0001t0002g0127 a0001c0010t0005g0210 a0001c0001t0001g0138 a0001c0001t0002g0127 a0001c0010t0005g0210	3	320	0.0094	28	c.602 others(45): Show c.602+2787_602+2788insAAAGAAAGAAAGAAAGAAAGGAAGGAAG	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	11/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10537706	C C	CCTTCCTT others(21): Show CCTTCCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00558.hp1 HG02004.hp1 others(11): Show HG00423.hp2 HG00558.hp1 HG02004.hp1 HG02145.hp1 HG02257.hp1 HG02258.hp2 HG02293.hp2 HG02897.hp1 HG03540.hp2 NA18959.hp2 NA18969.hp2 NA18979.hp2 NA19011.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0013 a0001c0001t0024 a0001c0001t0035	a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0002g0048 others(11): Show a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0002g0048 a0001c0001t0002g0079 a0001c0001t0003g0206 a0001c0001t0004g0007 a0001c0001t0004g0146 a0001c0001t0005g0217 a0001c0001t0007g0301 a0001c0001t0009g0163 a0001c0001t0010g0125 a0001c0001t0013g0256 a0001c0001t0024g0272 a0001c0001t0035g0194	14	320	0.0438	28	c.602 others(45): Show c.602+2787_602+2788insAAAGAAAGAAAGAAAGAAAGAAAGGAAG	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	11/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10537706	C C	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00738.hp1 HG01070.hp2 others(21): Show HG00544.hp2 HG00738.hp1 HG01070.hp2 HG01109.hp2 HG01255.hp2 HG02155.hp2 HG02257.hp2 HG02602.hp1 HG02615.hp1 HG03209.hp1 HG03486.hp2 HG03669.hp2 NA18522.hp2 NA18946.hp1 NA18970.hp1 NA18982.hp1 NA18986.hp2 NA18991.hp1 NA18991.hp2 NA18998.hp1 NA19011.hp1 NA19057.hp2 NA19082.hp1 NA20905.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0014 a0001c0001t0015 a0001c0001t0065 a0001c0001t0077 a0002c0002t0011 a0003c0003t0007 a0003c0003t0008	a0001c0001t0001g0158 a0001c0001t0002g0088 a0001c0001t0002g0298 others(21): Show a0001c0001t0001g0158 a0001c0001t0002g0088 a0001c0001t0002g0298 a0001c0001t0003g0191 a0001c0001t0003g0247 a0001c0001t0003g0303 a0001c0001t0004g0068 a0001c0001t0005g0004 a0001c0001t0005g0233 a0001c0001t0005g0263 a0001c0001t0006g0027 a0001c0001t0007g0243 a0001c0001t0009g0168 a0001c0001t0010g0269 a0001c0001t0011g0059 a0001c0001t0014g0063 a0001c0001t0015g0142 a0001c0001t0015g0181 a0001c0001t0065g0019 a0001c0001t0077g0133 a0002c0002t0011g0045 a0003c0003t0007g0116 a0003c0003t0007g0117 a0003c0003t0008g0115	24	320	0.0750	28	c.602 others(45): Show c.602+2760_602+2787dupAAAGAAAGAAAGAAAGAAAGAAAGAAAG	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	11/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10654384	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01517.hp2 HG02027.hp1 HG03453.hp1 others(1): Show HG01517.hp2 HG02027.hp1 HG03453.hp1 NA18962.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0003 a0001c0005t0008 a0001c0001t0001 a0001c0001t0003 a0001c0005t0008	a0001c0001t0001g0294 a0001c0001t0003g0212 a0001c0001t0003g0237 others(1): Show a0001c0001t0001g0294 a0001c0001t0003g0212 a0001c0001t0003g0237 a0001c0005t0008g0224	4	320	0.0125	28	c.11+ others(45): Show c.11+13474_11+13475insATATATATATATATATATATATATATAT	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	2/18			chr4	TogoVar
CLNK_chr4_10481395_10689768	10654389	A A	ATATATAT others(21): Show ATATATATATATATTTATATATTTATATT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG01257.hp2 HG02148.hp1 others(4): Show HG00423.hp1 HG01257.hp2 HG02148.hp1 HG04115.hp1 NA18979.hp1 NA19007.hp1 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 a0001c0001t0010 a0001c0001t0044 a0001c0001t0051 a0002c0002t0005	a0001c0001t0001g0284 a0001c0001t0004g0289 a0001c0001t0008g0312 others(4): Show a0001c0001t0001g0284 a0001c0001t0004g0289 a0001c0001t0008g0312 a0001c0001t0010g0302 a0001c0001t0044g0190 a0001c0001t0051g0092 a0002c0002t0005g0252	7	320	0.0219	28	c.11+ others(45): Show c.11+13469_11+13470insAATATAAATATATAAATATATATATATA	CLNK	ENSG00000109684.16	transcript	ENST00000226951.11	protein_coding	2/18			chr4	TogoVar
CLPB_chr11_72280495_72439531	72286223	G G	GTTTTTTT others(21): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01123.hp2 HG01516.hp2 HG01884.hp1 HG01123.hp2 HG01516.hp2 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0035 a0001c0001t0024 a0001c0001t0035	a0001c0001t0024g0027 a0001c0001t0024g0028 a0001c0001t0035g0153 a0001c0001t0024g0027 a0001c0001t0024g0028 a0001c0001t0035g0153	3	206	0.0146	28	c.71 others(39): Show c.7143_*7144insAAAAAAAAAAAAAAAAAAAAAAAAAAAA	CLPB	ENSG00000162129.15	transcript	ENST00000294053.9	protein_coding	17/17	7143		chr11	TogoVar
CLPTM1L_chr5_1312752_1350099	1324724	T T	TGCCTGGC others(21): Show TGCCTGGCATGCACGTGCCCTGAATCACA	intron_variant intron_variant	MODIFIER	NA19091.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0109 a0001c0001t0011g0109	1	370	0.0027	28	c.119 others(43): Show c.1197+11_1197+38dupTGTGATTCAGGGCACGTGCATGCCAGGC	CLPTM1L	ENSG00000049656.14	transcript	ENST00000320895.10	protein_coding	11/16			chr5	TogoVar
CLSTN1_chr1_9723926_9828965	9747176	C C	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0070 a0003c0004t0002g0070	1	270	0.0037	28	c.985 others(45): Show c.985+2284_985+2285insTTTTTTTTTTTTTTTTTTTTTTTTTTTT	CLSTN1	ENSG00000171603.18	transcript	ENST00000377298.9	protein_coding	7/18			chr1	TogoVar
CLSTN1_chr1_9723926_9828965	9776788	C C	CTCTATCT others(21): Show CTCTATCTATCTATCTATCTATCTATCTA	intron_variant intron_variant	MODIFIER	NA18990.hp1 NA18990.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0068 a0003c0004t0002g0068	1	270	0.0037	28	c.92- others(43): Show c.92-3395_92-3394insTAGATAGATAGATAGATAGATAGATAGA	CLSTN1	ENSG00000171603.18	transcript	ENST00000377298.9	protein_coding	1/18			chr1	TogoVar
CLSTN2_chr3_139930185_140582397	140163419	T T	TACACACA others(21): Show TACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG03453.hp2 HG02809.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0002 a0001c0008t0009 a0001c0001t0002 a0001c0008t0009	a0001c0001t0002g0105 a0001c0008t0009g0042 a0001c0001t0002g0105 a0001c0008t0009g0042	2	110	0.0182	28	c.110 others(47): Show c.110-12528_110-12501dupCACACACACACACACACACACACACA CA	CLSTN2	ENSG00000158258.16	transcript	ENST00000458420.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr3	TogoVar
CLSTN2_chr3_139930185_140582397	140171687	T T	TATATAAT others(21): Show TATATAATACGTATTATATATAATATATA	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0001 a0001c0001t0014g0001	1	110	0.0091	28	c.110 others(45): Show c.110-4259_110-4258insATACGTATTATATATAATATATAATATA	CLSTN2	ENSG00000158258.16	transcript	ENST00000458420.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr3	TogoVar
CLSTN2_chr3_139930185_140582397	140240174	C C	CTCTCTCT others(21): Show CTCTCTCTCTCTCTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03492.hp1 HG03492.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0069	1	110	0.0091	28	c.232 others(47): Show c.232+64102_232+64103insCTCTCTCTCTCTATATATATATATAT AT	CLSTN2	ENSG00000158258.16	transcript	ENST00000458420.7	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr3	TogoVar
CLSTN2_chr3_139930185_140582397	140419702	T T	TATGTATA others(21): Show TATGTATATACGTATATATACGTATATAC	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0066 a0002c0002t0001g0066	1	110	0.0091	28	c.638 others(45): Show c.638-1414_638-1413insCGTATATATACGTATATACATGTATATA	CLSTN2	ENSG00000158258.16	transcript	ENST00000458420.7	protein_coding	4/16		INFO_REALIGN_3_PRIME	chr3	TogoVar
CLTA_chr9_36185921_36217059	36216327	A A	ATGTGTGT others(21): Show ATGTGTGTGTGTGTGTGCGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG02683.hp1 HG03540.hp2 others(5): Show HG02615.hp2 HG02683.hp1 HG03540.hp2 HG04184.hp1 HG04204.hp1 NA18973.hp2 NA19006.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0018 a0001c0001t0002g0032 others(1): Show a0001c0001t0002g0002 a0001c0001t0002g0018 a0001c0001t0002g0032 a0001c0001t0002g0066	8	400	0.0200	28	c.45 others(39): Show c.4553_*4554insTGTGTGTGTGTGTGTGCGTGTGTGTGTG	CLTA	ENSG00000122705.18	transcript	ENST00000345519.10	protein_coding		4269		chr9	TogoVar
CLTA_chr9_36185921_36217059	36216327	A A	ATGTGTGT others(21): Show ATGTGTGTGTGTGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01074.hp2 HG01255.hp2 HG02809.hp1 others(4): Show HG01074.hp2 HG01255.hp2 HG02809.hp1 HG03453.hp2 HG03927.hp2 HG04204.hp2 NA18987.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0007 a0001c0001t0001g0085 a0001c0001t0001g0129 others(4): Show a0001c0001t0001g0007 a0001c0001t0001g0085 a0001c0001t0001g0129 a0001c0001t0001g0151 a0001c0001t0002g0012 a0001c0001t0002g0050 a0001c0001t0002g0158	7	400	0.0175	28	c.45 others(39): Show c.4553_*4554insTGTGTGTGTGTGTGTGTGTGTGTGTGTG	CLTA	ENSG00000122705.18	transcript	ENST00000345519.10	protein_coding		4269		chr9	TogoVar
CLTCL1_chr22_19174473_19296719	19190596	C C	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0004 a0001c0004t0004	a0001c0004t0004g0316 a0001c0004t0004g0316	1	346	0.0029	28	c.432 others(45): Show c.4323+707_4323+708insTTTTTTTTTTTTTTTTTTTTTTTTTTTT	CLTCL1	ENSG00000070371.16	transcript	ENST00000427926.6	protein_coding	27/32			chr22	TogoVar
CLUAP1_chr16_3496004_3544048	3529615	A A	AATATTAT others(21): Show AATATTATATATTATTTATATATTATTAT	intron_variant intron_variant	MODIFIER	NA19082.hp1 NA19082.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0222 a0001c0001t0001g0222	1	382	0.0026	28	c.929 others(43): Show c.929-939_929-938insTTATATATTATTATATATTATATATTAT	CLUAP1	ENSG00000103351.13	transcript	ENST00000576634.6	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr16	TogoVar
CLUL1_chr18_591988_655182	627013	A A	AAGAGAGA others(21): Show AAGAGAGAGAGAGAGAGAAAAGAAGAAAG	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0194	1	414	0.0024	28	c.424 others(41): Show c.424-81_424-80insGAGAGAGAGAGAGAAAAGAAGAAAGAGA	CLUL1	ENSG00000079101.18	transcript	ENST00000692774.1	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr18	TogoVar
CLYBL_chr13_99601690_99897570	99797560	T T	TTGTGTGT others(21): Show TTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0010 a0001c0005t0001g0010	1	218	0.0046	28	c.249 others(47): Show c.249+24554_249+24581dupGTGTGTGTGTGTGTGTGTGTGTGTGT GT	CLYBL	ENSG00000125246.16	transcript	ENST00000339105.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar

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