Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
CNTN1_chr12_40687439_41077415	40925573	A A	ATATATAC others(21): Show ATATATACATGTATATATATATATACGTG	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0016 a0001c0003t0016	a0001c0003t0016g0226 a0001c0003t0016g0226	1	230	0.0043	28	c.496 others(43): Show c.496+925_496+926insTACATGTATATATATATATACGTGTATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN4_chr3_2093866_3062959	2120364	T T	TATATATA others(21): Show TATATATAAATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0030 a0001c0002t0001g0030	1	115	0.0087	28	c.-14 others(49): Show c.-145+19732_-145+19733insAATATATATATATATATATAAATA TATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340707	A A	AGAGAGAG others(21): Show AGAGAGAGAGAGAGAGAGAGAGAGAGGGG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02647.hp1 HG03139.hp1 HG01891.hp1 HG02647.hp1 HG03139.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0008 a0001c0001 a0001c0002 a0003c0008	a0001c0001t0001 a0001c0002t0001 a0003c0008t0013 a0001c0001t0001 a0001c0002t0001 a0003c0008t0013	a0001c0001t0001g0059 a0001c0002t0001g0033 a0003c0008t0013g0109 a0001c0001t0001g0059 a0001c0002t0001g0033 a0003c0008t0013g0109	3	114	0.0263	28	c.-89 others(45): Show c.-89+1474_-89+1475insGAGAGAGAGAGAGAGAGAGAGAGAGGGG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340708	T T	TAGAGAGA others(21): Show TAGAGAGAGAGAGAGAGAGAGAGAGGGGG	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0004 a0001c0006t0004	a0001c0006t0004g0004 a0001c0006t0004g0004	1	80	0.0125	28	c.-89 others(45): Show c.-89+1476_-89+1477insGAGAGAGAGAGAGAGAGAGAGAGGGGGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(21): Show TATATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp1 HG00140.hp1 HG00438.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0100 a0001c0001t0002g0070 a0001c0001t0001g0100 a0001c0001t0002g0070	2	16	0.1250	28	c.-89 others(45): Show c.-89+1478_-89+1479insTATATATATATAGAGAGAGAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(21): Show TATATATATATATATAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG02074.hp2 HG01256.hp1 HG02074.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0005 a0001c0007t0016 a0001c0001t0005 a0001c0007t0016	a0001c0001t0005g0020 a0001c0007t0016g0105 a0001c0001t0005g0020 a0001c0007t0016g0105	2	16	0.1250	28	c.-89 others(45): Show c.-89+1478_-89+1479insTATATATATATATAGAGAGAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(21): Show TATATATATATATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01258.hp2 HG01258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0019 a0001c0001t0005g0019	1	15	0.0667	28	c.-89 others(45): Show c.-89+1478_-89+1479insTATATATATATATATAGAGAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(21): Show TATATATATATATATATATATAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0081 a0001c0001t0004g0081	1	15	0.0667	28	c.-89 others(45): Show c.-89+1478_-89+1479insTATATATATATATATATATAGAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2340710	T T	TATATATA others(21): Show TATATATATATATATATATATATAGAGAG	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0002 a0002	a0002c0017 a0002c0017	a0002c0017t0008 a0002c0017t0008	a0002c0017t0008g0067 a0002c0017t0008g0067	1	15	0.0667	28	c.-89 others(45): Show c.-89+1478_-89+1479insTATATATATATATATATATATAGAGAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481033	T T	TTTTCTTT others(21): Show TTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01361.hp1 HG02074.hp1 others(3): Show HG01261.hp2 HG01361.hp1 HG02074.hp1 HG03471.hp1 HG03516.hp1 HG03654.hp2	a0001 a0004 a0008 a0001 a0004 a0008	a0001c0005 a0001c0009 a0004c0011 others(1): Show a0001c0005 a0001c0009 a0004c0011 a0008c0028	a0001c0005t0001 a0001c0005t0010 a0001c0009t0004 others(2): Show a0001c0005t0001 a0001c0005t0010 a0001c0009t0004 a0004c0011t0003 a0008c0028t0001	a0001c0005t0001g0091 a0001c0005t0010g0085 a0001c0009t0004g0005 others(3): Show a0001c0005t0001g0091 a0001c0005t0010g0085 a0001c0009t0004g0005 a0004c0011t0003g0065 a0004c0011t0003g0111 a0008c0028t0001g0023	6	60	0.1000	28	c.-88 others(47): Show c.-88-90381_-88-90354dupTTCTTTCTTTCTTTCTTTCTTTCTTT CT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481055	T T	TTCTTTCT others(21): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTC	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03139.hp1 NA19043.hp1 HG03130.hp2 HG03139.hp1 NA19043.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0008 a0001c0001 a0001c0002 a0003c0008	a0001c0001t0003 a0001c0002t0001 a0003c0008t0013 a0001c0001t0003 a0001c0002t0001 a0003c0008t0013	a0001c0001t0003g0095 a0001c0002t0001g0108 a0003c0008t0013g0109 a0001c0001t0003g0095 a0001c0002t0001g0108 a0003c0008t0013g0109	3	101	0.0297	28	c.-88 others(47): Show c.-88-90354_-88-90353insTTCTTTCTTTCTTTCTTTCTCTCTTT CT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2607610	C C	CCACACAC others(21): Show CCACACACACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00639.hp2 others(7): Show HG00140.hp1 HG00140.hp2 HG00639.hp2 HG00738.hp2 HG02451.hp2 HG02683.hp1 HG02683.hp2 HG03239.hp1 HG03927.hp1 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0002t0002 a0001c0003t0001 a0001c0003t0002 a0001c0004t0002 a0001c0004t0006	a0001c0001t0001g0050 a0001c0001t0001g0100 a0001c0001t0002g0031 others(7): Show a0001c0001t0001g0050 a0001c0001t0001g0100 a0001c0001t0002g0031 a0001c0001t0005g0054 a0001c0002t0002g0038 a0001c0002t0002g0063 a0001c0003t0001g0094 a0001c0003t0002g0061 a0001c0004t0002g0064 a0001c0004t0006g0068	10	23	0.4348	28	c.55+ others(45): Show c.55+36068_55+36069insCACACACACACACACACACACACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2778304	A A	ATAAGAGA others(21): Show ATAAGAGAAAACCATGATACAATTGTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00438.hp2 others(62): Show HG00140.hp1 HG00140.hp2 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp2 HG00738.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01884.hp1 HG01884.hp2 HG01978.hp1 HG01978.hp2 HG02074.hp1 HG02074.hp2 HG02132.hp2 HG02165.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02572.hp2 HG02602.hp1 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02897.hp1 HG03041.hp1 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03239.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG04184.hp1 NA18906.hp2 NA18990.hp1 NA19043.hp2 NA20300.hp2	a0001 a0004 a0005 others(3): Show a0001 a0004 a0005 a0007 a0008 a0009	a0001c0001 a0001c0002 a0001c0003 others(16): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0013 a0001c0020 a0001c0023 a0001c0024 a0001c0025 a0004c0011 a0005c0026 a0007c0018 a0008c0028 a0009c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(35): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0003t0011 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0005t0009 a0001c0006t0002 a0001c0006t0004 a0001c0007t0016 a0001c0009t0004 a0001c0009t0014 a0001c0010t0003 a0001c0013t0007 a0001c0020t0002 a0001c0023t0004 a0001c0024t0015 a0001c0025t0001 a0004c0011t0003 a0005c0026t0017 a0007c0018t0003 a0008c0028t0001 a0009c0012t0009	a0001c0001t0001g0036 a0001c0001t0001g0049 a0001c0001t0001g0050 others(62): Show a0001c0001t0001g0036 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0100 a0001c0001t0002g0031 a0001c0001t0002g0055 a0001c0001t0002g0086 a0001c0001t0003g0008 a0001c0001t0003g0058 a0001c0001t0005g0019 a0001c0001t0005g0020 a0001c0001t0005g0054 a0001c0001t0005g0098 a0001c0001t0005g0115 a0001c0001t0008g0053 a0001c0001t0009g0052 a0001c0002t0001g0029 a0001c0002t0001g0088 a0001c0002t0002g0038 a0001c0002t0002g0063 a0001c0002t0002g0078 a0001c0002t0002g0102 a0001c0002t0003g0024 a0001c0002t0005g0002 a0001c0002t0005g0003 a0001c0002t0006g0075 a0001c0002t0007g0009 a0001c0003t0001g0014 a0001c0003t0001g0028 a0001c0003t0001g0045 a0001c0003t0001g0094 a0001c0003t0001g0116 a0001c0003t0002g0061 a0001c0003t0002g0076 a0001c0003t0002g0077 a0001c0003t0002g0107 a0001c0003t0003g0015 a0001c0003t0003g0047 a0001c0003t0003g0074 a0001c0003t0006g0040 a0001c0003t0011g0113 a0001c0004t0002g0017 a0001c0004t0006g0044 a0001c0004t0006g0068 a0001c0005t0001g0096 a0001c0005t0006g0010 a0001c0005t0006g0035 a0001c0005t0009g0090 a0001c0006t0002g0026 a0001c0006t0002g0060 a0001c0006t0004g0004 a0001c0007t0016g0105 a0001c0009t0004g0005 a0001c0009t0014g0039 a0001c0010t0003g0073 a0001c0013t0007g0056 a0001c0020t0002g0082 a0001c0023t0004g0041 a0001c0024t0015g0057 a0001c0025t0001g0099 a0004c0011t0003g0111 a0005c0026t0017g0046 a0007c0018t0003g0062 a0008c0028t0001g0023 a0009c0012t0009g0093	65	116	0.5603	28	c.358 others(47): Show c.358+32608_358+32635dupTAAGAGAAAACCATGATACAATTGTT TT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2798365	A A	ATATCTAT others(21): Show ATATCTATCTACCTATCTATCTATCTATC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0027 a0001c0004t0001g0027	1	27	0.0370	28	c.359 others(47): Show c.359-21121_359-21120insTATCTATCTACCTATCTATCTATCTA TC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		chr3	TogoVar
CNTN4_chr3_2093866_3062959	2798365	A A	ATATCTAT others(21): Show ATATCTATCTATCTATCTATCTATCTATC	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02486.hp2 HG03831.hp2 HG00438.hp1 HG02486.hp2 HG03831.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0007c0018 a0001c0001 a0001c0002 a0007c0018	a0001c0001t0002 a0001c0002t0002 a0007c0018t0003 a0001c0001t0002 a0001c0002t0002 a0007c0018t0003	a0001c0001t0002g0070 a0001c0002t0002g0078 a0007c0018t0003g0062 a0001c0001t0002g0070 a0001c0002t0002g0078 a0007c0018t0003g0062	3	29	0.1034	28	c.359 others(47): Show c.359-21121_359-21120insTATCTATCTATCTATCTATCTATCTA TC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		chr3	TogoVar
CNTN4_chr3_2093866_3062959	2815873	C C	CATATATA others(21): Show CATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02818.hp2 NA19043.hp2 HG02818.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0013 a0001c0001 a0001c0013	a0001c0001t0002 a0001c0013t0007 a0001c0001t0002 a0001c0013t0007	a0001c0001t0002g0086 a0001c0013t0007g0056 a0001c0001t0002g0086 a0001c0013t0007g0056	2	39	0.0513	28	c.359 others(45): Show c.359-3595_359-3594insATATATATATATATATATATATATATAT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2994613	A A	ATATATAT others(21): Show ATATATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0022 a0001c0002t0001g0022	1	101	0.0099	28	c.148 others(47): Show c.1486+6142_1486+6143insATATATATATATATATATATATATAT GT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2994613	A A	ATATATAT others(21): Show ATATATATATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0088 a0001c0002t0001g0088	1	101	0.0099	28	c.148 others(47): Show c.1486+6142_1486+6143insATATATATATATATATATATATATGT GT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99201351	T T	TTTCCTTC others(21): Show TTTCCTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0053	1	8	0.1250	28	c.-20 others(51): Show c.-209-123991_-209-123964dupCTTCCTTCCTTCCTTCCTTCCT TCCTTC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99213374	G G	GTATATAC others(21): Show GTATATACATATATACACGTGTATATATA	intron_variant intron_variant	MODIFIER	NA18939.hp2 NA18957.hp2 NA18939.hp2 NA18957.hp2	a0003 a0010 a0003 a0010	a0003c0003 a0010c0007 a0003c0003 a0010c0007	a0003c0003t0002 a0010c0007t0023 a0003c0003t0002 a0010c0007t0023	a0003c0003t0002g0002 a0010c0007t0023g0046 a0003c0003t0002g0002 a0010c0007t0023g0046	2	66	0.0303	28	c.-20 others(51): Show c.-209-111971_-209-111944dupTATATACATATATACACGTGTA TATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99358255	A A	ATTTTTTT others(21): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00733.hp2 NA19000.hp1 HG00733.hp2 NA19000.hp1	a0002 a0004 a0002 a0004	a0002c0002 a0004c0006 a0002c0002 a0004c0006	a0002c0002t0022 a0004c0006t0014 a0002c0002t0022 a0004c0006t0014	a0002c0002t0022g0010 a0004c0006t0014g0058 a0002c0002t0022g0010 a0004c0006t0014g0058	2	9	0.2222	28	c.-71 others(47): Show c.-71+32791_-71+32792insTTTTTTTTTTTTTTTTTTTTTTTTTT TT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99408448	G G	GAAAGAAA others(21): Show GAAAGAAAGAAAGAAAGAAAGAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG03041.hp1 NA19000.hp1 others(1): Show HG02735.hp2 HG03041.hp1 NA19000.hp1 NA19070.hp2	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0008	a0001c0001 a0003c0003 a0004c0006 others(1): Show a0001c0001 a0003c0003 a0004c0006 a0008c0012	a0001c0001t0014 a0003c0003t0002 a0004c0006t0014 others(1): Show a0001c0001t0014 a0003c0003t0002 a0004c0006t0014 a0008c0012t0008	a0001c0001t0014g0016 a0003c0003t0002g0061 a0004c0006t0014g0058 others(1): Show a0001c0001t0014g0016 a0003c0003t0002g0061 a0004c0006t0014g0058 a0008c0012t0008g0026	4	44	0.0909	28	c.-71 others(47): Show c.-71+82965_-71+82966insAAGAAAGAAAGAAAGAAAGAGAAAGA AA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99408448	G G	GAAAGAAA others(21): Show GAAAGAAAGAAAGAAAGAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0049 a0001c0001t0016g0049	1	41	0.0244	28	c.-71 others(47): Show c.-71+82965_-71+82966insAAGAAAGAAAGAAAGAGAAAGAAAGA AA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99408448	G G	GAAAGAAA others(21): Show GAAAGAAAGAAAGAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0005 a0005	a0005c0004 a0005c0004	a0005c0004t0002 a0005c0004t0002	a0005c0004t0002g0041 a0005c0004t0002g0041	1	41	0.0244	28	c.-71 others(47): Show c.-71+82965_-71+82966insAAGAAAGAAAGAGAAAGAAAGAAAGA AA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100090505	C C	CCCTCCCT others(21): Show CCCTCCCTCCCTCCCTCCCTCCCTCCCTT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02895.hp1 HG02258.hp1 HG02895.hp1	a0002 a0007 a0002 a0007	a0002c0002 a0007c0010 a0002c0002 a0007c0010	a0002c0002t0005 a0007c0010t0011 a0002c0002t0005 a0007c0010t0011	a0002c0002t0005g0013 a0007c0010t0011g0009 a0002c0002t0005g0013 a0007c0010t0011g0009	2	37	0.0541	28	c.158 others(49): Show c.1580+16234_1580+16235insCCCTTCCTCCCTCCCTCCCTCCCT CCCT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1098787	C C	CATATATA others(21): Show CATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01109.hp1 NA18961.hp2 HG01109.hp1 NA18961.hp2	a0001 a0001	a0001c0003 a0001c0005 a0001c0003 a0001c0005	a0001c0003t0001 a0001c0005t0001 a0001c0003t0001 a0001c0005t0001	a0001c0003t0001g0011 a0001c0005t0001g0038 a0001c0003t0001g0011 a0001c0005t0001g0038	2	149	0.0134	28	c.-83 others(45): Show c.-83+5668_-83+5669insTATATATATATATATATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1119322	C C	CGTGTGTG others(21): Show CGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02622.hp2 HG01978.hp1 HG02622.hp2	a0001 a0001	a0001c0002 a0001c0006 a0001c0002 a0001c0006	a0001c0002t0001 a0001c0006t0002 a0001c0002t0001 a0001c0006t0002	a0001c0002t0001g0077 a0001c0006t0002g0178 a0001c0002t0001g0077 a0001c0006t0002g0178	2	9	0.2222	28	c.-83 others(47): Show c.-83+26206_-83+26233dupTGTGTGTGTGTGTGTGTGTGTGTGTG TG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1160344	G G	GTATATAT others(21): Show GTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02165.hp2 NA18979.hp1 others(2): Show HG01255.hp1 HG02165.hp2 NA18979.hp1 NA18979.hp2 NA21309.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0004 others(1): Show a0001c0002 a0001c0003 a0001c0004 a0001c0007	a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 others(1): Show a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 a0001c0007t0001	a0001c0002t0001g0227 a0001c0003t0001g0025 a0001c0003t0001g0168 others(2): Show a0001c0002t0001g0227 a0001c0003t0001g0025 a0001c0003t0001g0168 a0001c0004t0001g0097 a0001c0007t0001g0066	5	36	0.1389	28	c.55+ others(45): Show c.55+12305_55+12306insTATATATATATATATATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1160365	T T	TATATATA others(21): Show TATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA19030.hp2 NA18522.hp1 NA19030.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0112 a0001c0006t0001g0213 a0001c0006t0001g0112 a0001c0006t0001g0213	2	217	0.0092	28	c.55+ others(45): Show c.55+12305_55+12306insTATATATATATATATATATATATACATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1280459	A A	ATTTTTTT others(21): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0130 a0001c0007t0001g0130	1	41	0.0244	28	c.454 others(45): Show c.454+1974_454+1975insTTTTTTTTTTTTTTTTTTTTTTTTTTTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	5/22	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTNAP2_chr7_146111801_148425998	146352750	G G	GTTGTTTT others(21): Show GTTGTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0021 a0001c0002t0001g0021	1	10	0.1000	28	c.97+ others(47): Show c.97+235779_97+235780insGTTTTTTTTTTTTTTTTTTTTTTTTT TT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146451880	C C	CATACGTG others(21): Show CATACGTGTATGTATATATACGTATATAT	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0023 a0001c0003t0023	a0001c0003t0023g0030 a0001c0003t0023g0030	1	39	0.0256	28	c.98- others(47): Show c.98-322390_98-322389insTACGTGTATGTATATATACGTATATA TA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146638476	C C	CTTTTTTT others(21): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0014 a0001c0006t0014	a0001c0006t0014g0033 a0001c0006t0014g0033	1	26	0.0385	28	c.98- others(47): Show c.98-135773_98-135772insTTTTTTTTTTTTTTTTTTTTTTTTTT TT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146721889	A A	ATATATAT others(21): Show ATATATATATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0023 a0001c0003t0011g0023	1	14	0.0714	28	c.98- others(45): Show c.98-52381_98-52380insATATATATTTTTTTTTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146735687	G G	GTATGTGC others(21): Show GTATGTGCATATATATACATATGCATATA	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02486.hp1 NA18522.hp1 others(1): Show HG00735.hp2 HG02486.hp1 NA18522.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0013 others(1): Show a0001c0001 a0001c0003 a0001c0013 a0001c0019	a0001c0001t0007 a0001c0003t0023 a0001c0013t0003 others(1): Show a0001c0001t0007 a0001c0003t0023 a0001c0013t0003 a0001c0019t0006	a0001c0001t0007g0020 a0001c0003t0023g0030 a0001c0013t0003g0039 others(1): Show a0001c0001t0007g0020 a0001c0003t0023g0030 a0001c0013t0003g0039 a0001c0019t0006g0015	4	32	0.1250	28	c.98- others(45): Show c.98-38577_98-38550dupCATATATATACATATGCATATATATGTG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147347461	T T	TATATATA others(21): Show TATATATATATGCATATATATATATATGC	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0029 a0001c0003t0004g0029	1	33	0.0303	28	c.149 others(49): Show c.1498+47181_1498+47182insGCATATATATATATATGCATATAT ATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	9/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147422105	A A	ATATATAT others(21): Show ATATATATATATAGTATGTATATATACAG	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02886.hp2 HG02896.hp1 others(3): Show HG02717.hp2 HG02886.hp2 HG02896.hp1 HG03139.hp2 NA19030.hp1 NA21309.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0005 a0001c0010 others(2): Show a0001c0001 a0001c0005 a0001c0010 a0001c0011 a0004c0020	a0001c0001t0001 a0001c0005t0008 a0001c0005t0022 others(3): Show a0001c0001t0001 a0001c0005t0008 a0001c0005t0022 a0001c0010t0002 a0001c0011t0016 a0004c0020t0005	a0001c0001t0001g0038 a0001c0005t0008g0005 a0001c0005t0022g0032 others(3): Show a0001c0001t0001g0038 a0001c0005t0008g0005 a0001c0005t0022g0032 a0001c0010t0002g0014 a0001c0011t0016g0019 a0004c0020t0005g0016	6	37	0.1622	28	c.167 others(49): Show c.1670+26364_1670+26391dupTAGTATGTATATATACAGTATATA TATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	10/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147560168	C C	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0004 a0001c0012t0004	a0001c0012t0004g0026 a0001c0012t0004g0026	1	8	0.1250	28	c.177 others(47): Show c.1778-1947_1778-1946insAAAAAAAAAAAAAAAAAAAAAAAAAA AA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	11/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147784381	C C	CATATATA others(21): Show CATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0004 a0001c0012t0004	a0001c0012t0004g0026 a0001c0012t0004g0026	1	7	0.1429	28	c.209 others(51): Show c.2099-119158_2099-119157insATATATATATATATATATATAT ATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147919459	C C	CTTTCTTT others(21): Show CTTTCTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0034 a0001c0001t0012g0034	1	9	0.1111	28	c.225 others(49): Show c.2255+15741_2255+15742insCTTTTTTTTTTTTTTTTTTTTTTT TTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	14/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148106493	G G	GATAGATA others(21): Show GATAGATAGATAGATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0016 a0001c0011t0016	a0001c0011t0016g0019 a0001c0011t0016g0019	1	6	0.1667	28	c.238 others(49): Show c.2384-11622_2384-11621insGATAGATAGATATATATATATATA TATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	15/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148136017	A A	AAGGAAGG others(21): Show AAGGAAGGAAGGAAGGAAGGAAGGGAGGG	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	20	0.0500	28	c.255 others(49): Show c.2555-11471_2555-11470insAAGGAAGGAAGGAAGGAAGGGAGG GAGG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	16/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148136017	A A	AAGGAAGG others(21): Show AAGGAAGGAAGGAAGGAAGGGAGGGAGGG	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0029 a0001c0003t0004g0029	1	20	0.0500	28	c.255 others(49): Show c.2555-11471_2555-11470insAAGGAAGGAAGGAAGGGAGGGAGG GAGG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	16/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148137671	A A	AGGAAGGA others(21): Show AGGAAGGAAGGAAGGAAGGAAGGAAGGAT	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0003 a0001c0013t0003	a0001c0013t0003g0039 a0001c0013t0003g0039	1	40	0.0250	28	c.255 others(47): Show c.2555-9793_2555-9792insTGGAAGGAAGGAAGGAAGGAAGGAAG GA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	16/23	INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP3B_chr9_41885536_42134426	41979666	T T	TTTTTAAA others(21): Show TTTTTAAAAATATTTTATATATATATATA	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0031 a0031	a0031c0035 a0031c0035	a0031c0035t0007 a0031c0035t0007	a0031c0035t0007g0023 a0031c0035t0007g0023	1	93	0.0108	28	c.147 others(47): Show c.1477+6501_1477+6502insTATATATATATATAAAATATTTTTAA AA	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding	9/23		chr9	TogoVar
CNTNAP3B_chr9_41885536_42134426	42030750	C C	CAGAGAGA others(21): Show CAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0014 a0014	a0014c0022 a0014c0022	a0014c0022t0001 a0014c0022t0001	a0014c0022t0001g0055 a0014c0022t0001g0055	1	17	0.0588	28	c.391 others(47): Show c.391-17253_391-17226dupCTCTCTCTCTCTCTCTCTCTCTCTCT CT	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding	3/23		chr9	TogoVar
CNTNAP3B_chr9_41885536_42134426	42034186	G G	GTATCTAT others(21): Show GTATCTATCTATCTATCTATCTATCTATC	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG03831.hp2 HG00280.hp1 HG03831.hp2	a0001 a0010 a0001 a0010	a0001c0001 a0010c0013 a0001c0001 a0010c0013	a0001c0001t0003 a0010c0013t0003 a0001c0001t0003 a0010c0013t0003	a0001c0001t0003g0096 a0010c0013t0003g0108 a0001c0001t0003g0096 a0010c0013t0003g0108	2	65	0.0308	28	c.391 others(47): Show c.391-20662_391-20661insGATAGATAGATAGATAGATAGATAGA TA	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding	3/23		chr9	TogoVar
CNTNAP4_chr16_76272401_76565757	76460773	A A	AAAAAAAA others(21): Show AAAAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	NA18962.hp1 NA18962.hp1	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0005 a0002c0011t0005	a0002c0011t0005g0139 a0002c0011t0005g0139	1	104	0.0096	28	c.133 others(47): Show c.1334-1182_1334-1181insAAAAAAAAAAAAAAAATATATATATA TA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	8/23	INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76460773	A A	AAAAAAAA others(21): Show AAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0017 a0017	a0017c0045 a0017c0045	a0017c0045t0014 a0017c0045t0014	a0017c0045t0014g0075 a0017c0045t0014g0075	1	104	0.0096	28	c.133 others(47): Show c.1334-1182_1334-1181insAAAAAAAAAATATATATATATATATA TA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	8/23	INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76470482	A A	AATATATA others(21): Show AATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0006 a0006	a0006c0009 a0006c0009	a0006c0009t0001 a0006c0009t0001	a0006c0009t0001g0023 a0006c0009t0001g0023	1	98	0.0102	28	c.165 others(47): Show c.1655+2974_1655+2975insTATATATATATATATATATATATATA TA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	10/23	INFO_REALIGN_3_PRIME	chr16	TogoVar

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