Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FRS2_chr12_69465388_69584793	69485091	A A	ACACACAC others(21): Show ACACACACACACACACACACACACGCGCG	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG02074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0288 a0001c0001t0002g0288	1	342	0.0029	28	c.-26 others(49): Show c.-261+14584_-261+14585insGCGCGCACACACACACACACACAC ACAC	FRS2	ENSG00000166225.9	transcript	ENST00000549921.6	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr12	TogoVar
FRS2_chr12_69465388_69584793	69485134	C C	CACACACA others(21): Show CACACACACACACACACACACACACACAT	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0172 a0001c0002t0001g0172	1	342	0.0029	28	c.-26 others(49): Show c.-261+14606_-261+14607insACACACACACACACACACACACAC ATAC	FRS2	ENSG00000166225.9	transcript	ENST00000549921.6	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr12	TogoVar
FRS2_chr12_69465388_69584793	69538197	T T	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01361.hp2 HG02056.hp2 others(8): Show HG01361.hp1 HG01361.hp2 HG02056.hp2 HG02735.hp1 HG02965.hp1 HG03130.hp1 NA18947.hp2 NA18959.hp1 NA19055.hp2 NA19090.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0005 a0001c0001t0013 a0001c0001t0025 others(2): Show a0001c0001t0005 a0001c0001t0013 a0001c0001t0025 a0001c0002t0001 a0001c0002t0011	a0001c0001t0005g0015 a0001c0001t0013g0189 a0001c0001t0025g0013 others(8): Show a0001c0001t0005g0015 a0001c0001t0013g0189 a0001c0001t0025g0013 a0001c0002t0001g0139 a0001c0002t0001g0141 a0001c0002t0001g0150 a0001c0002t0001g0194 a0001c0002t0001g0200 a0001c0002t0001g0215 a0001c0002t0001g0251 a0001c0002t0011g0111	11	342	0.0322	28	c.-12 others(47): Show c.-122+6167_-122+6168insTATATATATATATATATATATATATA TA	FRS2	ENSG00000166225.9	transcript	ENST00000549921.6	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr12	TogoVar
FRYL_chr4_48492357_48785279	48592082	T T	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01975.hp2 HG02523.hp1 others(2): Show HG01074.hp2 HG01975.hp2 HG02523.hp1 NA18978.hp2 NA19003.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0100 others(2): Show a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0100 a0001c0002t0001g0106 a0001c0002t0001g0193	5	282	0.0177	28	c.133 others(47): Show c.1336-1280_1336-1253dupTATATATATATATATATATATATATA TA	FRYL	ENSG00000075539.15	transcript	ENST00000358350.9	protein_coding	16/63			chr4	TogoVar
FRYL_chr4_48492357_48785279	48645122	T T	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0183 a0001c0001t0001g0183	1	282	0.0036	28	c.-80 others(47): Show c.-80-10633_-80-10632insTATATATATATATATATATATATATA TA	FRYL	ENSG00000075539.15	transcript	ENST00000358350.9	protein_coding	3/63			chr4	TogoVar
FRYL_chr4_48492357_48785279	48645124	T T	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01192.hp1 HG01358.hp2 others(9): Show HG01070.hp1 HG01192.hp1 HG01358.hp2 HG01361.hp1 HG01943.hp1 HG01978.hp2 HG02258.hp1 HG02451.hp1 NA18991.hp2 NA19003.hp2 NA19085.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0022 a0001c0001 a0001c0022	a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 a0001c0022t0003	a0001c0001t0001g0122 a0001c0001t0001g0130 a0001c0001t0001g0131 others(9): Show a0001c0001t0001g0122 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0140 a0001c0001t0001g0185 a0001c0001t0001g0187 a0001c0001t0001g0199 a0001c0001t0001g0205 a0001c0001t0002g0276 a0001c0001t0002g0278 a0001c0001t0010g0141 a0001c0022t0003g0002	12	282	0.0426	28	c.-80 others(47): Show c.-80-10662_-80-10635dupTATATATATATATATATATATATATA TA	FRYL	ENSG00000075539.15	transcript	ENST00000358350.9	protein_coding	3/63			chr4	TogoVar
FRYL_chr4_48492357_48785279	48645154	A A	ATATATAT others(21): Show ATATATATATATATATATATATATATATC	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0133 a0001c0001t0001g0133	1	282	0.0036	28	c.-80 others(47): Show c.-80-10665_-80-10664insGATATATATATATATATATATATATA TA	FRYL	ENSG00000075539.15	transcript	ENST00000358350.9	protein_coding	3/63			chr4	TogoVar
FRY_chr13_32026774_32304125	32268505	A A	AAAAAAAA others(21): Show AAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0011 a0011	a0011c0035 a0011c0035	a0011c0035t0003 a0011c0035t0003	a0011c0035t0003g0032 a0011c0035t0003g0032	1	236	0.0042	28	c.813 others(47): Show c.8136+1147_8136+1148insAAAAAATATATATATATATATATATA TA	FRY	ENSG00000073910.23	transcript	ENST00000542859.6	protein_coding	55/60		INFO_REALIGN_3_PRIME	chr13	TogoVar
FSD1L_chr9_105443034_105557433	105481141	C C	CTGTGTGT others(21): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0190 a0001c0001t0009g0190	1	380	0.0026	28	c.464 others(45): Show c.464+1776_464+1803dupTGTGTGTGTGTGTGTGTGTGTGTGTGTG	FSD1L	ENSG00000106701.13	transcript	ENST00000481272.6	protein_coding	6/13		INFO_REALIGN_3_PRIME	chr9	TogoVar
FSD1L_chr9_105443034_105557433	105533416	C C	CTTTTTTT others(21): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG03130.hp2 HG02970.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0007 a0001c0001t0005 a0001c0001t0007	a0001c0001t0005g0177 a0001c0001t0007g0202 a0001c0001t0005g0177 a0001c0001t0007g0202	2	380	0.0053	28	c.102 others(47): Show c.1026-1053_1026-1052insTTTTTTTTTTTTTTTTTTTTTTTTTT TT	FSD1L	ENSG00000106701.13	transcript	ENST00000481272.6	protein_coding	10/13		INFO_REALIGN_3_PRIME	chr9	TogoVar
FSHR_chr2_48957157_49159515	49021863	C C	CTCTCTCT others(21): Show CTCTCTCTCTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02015.hp1 NA18978.hp2 HG02015.hp1 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0181 a0001c0001t0002g0035 a0001c0001t0001g0181 a0001c0001t0002g0035	2	350	0.0057	28	c.225 others(45): Show c.225-1704_225-1703insTATATATATATATATATATAGAGAGAGA	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021863	C C	CTCTCTCT others(21): Show CTCTCTCTCTCTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0046 a0001c0001t0002g0046	1	350	0.0029	28	c.225 others(45): Show c.225-1704_225-1703insTATATATATATATATATAGAGAGAGAGA	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021863	C C	CTCTCTCT others(21): Show CTCTCTCTCTCTCTATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19091.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0070 a0001c0001t0002g0070	1	350	0.0029	28	c.225 others(45): Show c.225-1704_225-1703insTATATATATATATATAGAGAGAGAGAGA	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021863	C C	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0075 a0001c0001t0002g0075	1	350	0.0029	28	c.225 others(45): Show c.225-1704_225-1703insTATATATATATATAGAGAGAGAGAGAGA	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021863	C C	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTATATATATATA	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0343 a0003c0003t0003g0343	1	350	0.0029	28	c.225 others(45): Show c.225-1704_225-1703insTATATATATATAGAGAGAGAGAGAGAGA	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021863	C C	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTCTCTATATATA	intron_variant intron_variant	MODIFIER	NA19057.hp1 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0045 a0001c0001t0002g0045	1	350	0.0029	28	c.225 others(45): Show c.225-1704_225-1703insTATATATAGAGAGAGAGAGAGAGAGAGA	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021863	C C	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTCTCTCTCTATA	intron_variant intron_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0329 a0002c0002t0001g0329	1	350	0.0029	28	c.225 others(45): Show c.225-1704_225-1703insTATAGAGAGAGAGAGAGAGAGAGAGAGA	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021886	T T	TATATATA others(21): Show TATATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0197 a0002c0002t0001g0197	1	350	0.0029	28	c.225 others(45): Show c.225-1727_225-1726insCTCTCTCTCTCTCTCTATATATATATAT	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021886	T T	TATATATA others(21): Show TATATATATATATATATATAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02602.hp1 NA18977.hp2 HG02602.hp1 NA18977.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0044 a0002c0002t0002g0094 a0002c0002t0002g0044 a0002c0002t0002g0094	2	350	0.0057	28	c.225 others(45): Show c.225-1727_225-1726insCTCTCTCTCTATATATATATATATATAT	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021886	T T	TATATATA others(21): Show TATATATATATATATATATATAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0024 a0001c0001t0002g0024	1	350	0.0029	28	c.225 others(45): Show c.225-1727_225-1726insCTCTCTCTATATATATATATATATATAT	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSHR_chr2_48957157_49159515	49021886	T T	TATATATA others(21): Show TATATATATATATATATATATATAGAGAG	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0043 a0002c0002t0004g0043	1	350	0.0029	28	c.225 others(45): Show c.225-1727_225-1726insCTCTCTATATATATATATATATATATAT	FSHR	ENSG00000170820.12	transcript	ENST00000406846.7	protein_coding	2/9			chr2	TogoVar
FSIP1_chr15_39595031_39787841	39776216	G G	GGGAGGGA others(21): Show GGGAGGGAGGGAGGGAGGGAGGGAGGGAA	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00609.hp1 HG01099.hp2 others(31): Show HG00544.hp1 HG00609.hp1 HG01099.hp2 HG01109.hp2 HG01123.hp2 HG01168.hp2 HG01496.hp2 HG01975.hp2 HG01978.hp2 HG02132.hp1 HG02165.hp2 HG02293.hp1 HG02523.hp1 HG03017.hp1 HG04204.hp2 NA18947.hp1 NA18960.hp1 NA18966.hp1 NA18969.hp1 NA18971.hp1 NA18981.hp1 NA18984.hp2 NA18989.hp2 NA18998.hp1 NA18999.hp2 NA19003.hp1 NA19004.hp2 NA19005.hp2 NA19063.hp1 NA19074.hp2 NA19076.hp1 NA19081.hp1 NA19084.hp2 NA19087.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0003c0003t0001 a0001c0001t0001 a0002c0002t0001 a0003c0003t0001	a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0208 others(31): Show a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0219 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0227 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0002c0002t0001g0218 a0002c0002t0001g0220 a0002c0002t0001g0224 a0002c0002t0001g0228 a0002c0002t0001g0237 a0002c0002t0001g0238 a0002c0002t0001g0239 a0002c0002t0001g0240 a0002c0002t0001g0241 a0002c0002t0001g0242 a0002c0002t0001g0243 a0002c0002t0001g0244 a0002c0002t0001g0245 a0002c0002t0001g0246 a0003c0003t0001g0136	34	254	0.1339	28	c.126 others(43): Show c.126+182_126+183insTTCCCTCCCTCCCTCCCTCCCTCCCTCC	FSIP1	ENSG00000150667.8	transcript	ENST00000350221.4	protein_coding	2/11			chr15	TogoVar
FSIP1_chr15_39595031_39787841	39784805	T T	TACACACA others(21): Show TACACACACACACACACACACACACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp1 HG02976.hp2 HG03041.hp1 others(2): Show HG02630.hp1 HG02976.hp2 HG03041.hp1 NA18906.hp1 NA21309.hp1	a0003 a0004 a0005 a0003 a0004 a0005	a0003c0003 a0004c0004 a0005c0005 a0003c0003 a0004c0004 a0005c0005	a0003c0003t0006 a0003c0003t0011 a0004c0004t0006 others(1): Show a0003c0003t0006 a0003c0003t0011 a0004c0004t0006 a0005c0005t0005	a0003c0003t0006g0005 a0003c0003t0011g0006 a0004c0004t0006g0008 others(2): Show a0003c0003t0006g0005 a0003c0003t0011g0006 a0004c0004t0006g0008 a0004c0004t0006g0009 a0005c0005t0005g0007	5	254	0.0197	28	c.-21 others(39): Show c.-2186_-2185insGTGTGTGTGTGTGTGTGTGTGTGTGTGT	FSIP1	ENSG00000150667.8	transcript	ENST00000350221.4	protein_coding		1965		chr15	TogoVar
FSTL4_chr5_133191455_133617541	133372245	C C	CTATGTAT others(21): Show CTATGTATCTATGTATGTATGTATGTATG	intron_variant intron_variant	MODIFIER	HG03491.hp2 HG03688.hp1 NA18994.hp1 others(1): Show HG03491.hp2 HG03688.hp1 NA18994.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0016 a0001c0001 a0002c0002 a0004c0016	a0001c0001t0021 a0002c0002t0002 a0002c0002t0005 others(1): Show a0001c0001t0021 a0002c0002t0002 a0002c0002t0005 a0004c0016t0001	a0001c0001t0021g0008 a0002c0002t0002g0042 a0002c0002t0005g0005 others(1): Show a0001c0001t0021g0008 a0002c0002t0002g0042 a0002c0002t0005g0005 a0004c0016t0001g0045	4	176	0.0227	28	c.409 others(47): Show c.409+28492_409+28493insCATACATACATACATACATAGATACA TA	FSTL4	ENSG00000053108.18	transcript	ENST00000265342.12	protein_coding	4/15			chr5	TogoVar
FSTL4_chr5_133191455_133617541	133375291	C C	CATATATA others(21): Show CATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG02071.hp1 HG02145.hp1 others(5): Show HG01070.hp2 HG02071.hp1 HG02145.hp1 HG02559.hp2 HG02738.hp1 HG04115.hp1 HG04204.hp1 NA18991.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0005 a0001c0001 a0005c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0005c0005t0004	a0001c0001t0001g0002 a0001c0001t0001g0075 a0001c0001t0001g0162 others(5): Show a0001c0001t0001g0002 a0001c0001t0001g0075 a0001c0001t0001g0162 a0001c0001t0003g0033 a0001c0001t0003g0068 a0001c0001t0004g0037 a0001c0001t0004g0055 a0005c0005t0004g0034	8	176	0.0455	28	c.409 others(47): Show c.409+25446_409+25447insATATATATATATATATATATATATAT AT	FSTL4	ENSG00000053108.18	transcript	ENST00000265342.12	protein_coding	4/15			chr5	TogoVar
FSTL4_chr5_133191455_133617541	133517447	A A	AAAAAAAA others(21): Show AAAAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0020	1	176	0.0057	28	c.160 others(47): Show c.160+49738_160+49739insATATATATATATATTTTTTTTTTTTT TT	FSTL4	ENSG00000053108.18	transcript	ENST00000265342.12	protein_coding	3/15			chr5	TogoVar
FSTL4_chr5_133191455_133617541	133517447	A A	AAAAAAAA others(21): Show AAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00609.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0032 a0002c0002t0002g0032	1	176	0.0057	28	c.160 others(47): Show c.160+49738_160+49739insATATATATATATATATTTTTTTTTTT TT	FSTL4	ENSG00000053108.18	transcript	ENST00000265342.12	protein_coding	3/15			chr5	TogoVar
FSTL4_chr5_133191455_133617541	133517447	A A	AAAAAAAA others(21): Show AAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02145.hp1 HG00438.hp1 HG02145.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0002 a0001c0001t0004 a0002c0002t0002	a0001c0001t0004g0055 a0002c0002t0002g0073 a0001c0001t0004g0055 a0002c0002t0002g0073	2	176	0.0114	28	c.160 others(47): Show c.160+49738_160+49739insATATATATATATATATATTTTTTTTT TT	FSTL4	ENSG00000053108.18	transcript	ENST00000265342.12	protein_coding	3/15			chr5	TogoVar
FSTL4_chr5_133191455_133617541	133517447	A A	AAAAAATA others(21): Show AAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0068 a0001c0001t0003g0068	1	176	0.0057	28	c.160 others(47): Show c.160+49738_160+49739insATATATATATATATATATATATATTT TT	FSTL4	ENSG00000053108.18	transcript	ENST00000265342.12	protein_coding	3/15			chr5	TogoVar
FSTL4_chr5_133191455_133617541	133517447	A A	AAAATATA others(21): Show AAAATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0058 a0001c0001t0001g0058	1	176	0.0057	28	c.160 others(47): Show c.160+49738_160+49739insATATATATATATATATATATATATAT TT	FSTL4	ENSG00000053108.18	transcript	ENST00000265342.12	protein_coding	3/15			chr5	TogoVar
FSTL4_chr5_133191455_133617541	133590093	C C	CTTTATTT others(21): Show CTTTATTTATTTATTTATTTATTTATTTA	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0063 a0001c0001t0001g0063	1	176	0.0057	28	c.126 others(47): Show c.126+13737_126+13764dupTAAATAAATAAATAAATAAATAAATA AA	FSTL4	ENSG00000053108.18	transcript	ENST00000265342.12	protein_coding	2/15			chr5	TogoVar
FSTL5_chr4_161378897_162169000	161437565	C C	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG03225.hp1 NA18612.hp1 HG02074.hp2 HG03225.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0086 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0086	3	142	0.0211	28	c.184 others(49): Show c.1841+17438_1841+17439insTTTTTTTTTTTTTTTTTTTTTTTT TTTT	FSTL5	ENSG00000168843.14	transcript	ENST00000306100.10	protein_coding	15/15			chr4	TogoVar
FSTL5_chr4_161378897_162169000	161929681	G G	GTGTGTGT others(21): Show GTGTGTGTGTGTGTGTGTGTGTGTGTATA	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0002 a0004c0006t0002	a0004c0006t0002g0001 a0004c0006t0002g0001	1	142	0.0070	28	c.161 others(45): Show c.161-9030_161-9029insTATACACACACACACACACACACACACA	FSTL5	ENSG00000168843.14	transcript	ENST00000306100.10	protein_coding	3/15			chr4	TogoVar
FSTL5_chr4_161378897_162169000	162160087	T T	TATATATG others(21): Show TATATATGTGTATATACATATATGTGTAA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG02040.hp1 HG02109.hp1 others(15): Show HG00140.hp2 HG02040.hp1 HG02109.hp1 HG02257.hp1 HG02280.hp2 HG02559.hp2 HG02572.hp1 HG02818.hp1 HG03098.hp1 HG03130.hp1 HG03486.hp1 HG04228.hp1 HG06807.hp1 NA18945.hp2 NA18964.hp1 NA18990.hp1 NA19064.hp1 NA19065.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0003 a0001c0010 others(3): Show a0001c0001 a0001c0003 a0001c0010 a0002c0004 a0003c0005 a0004c0006	a0001c0001t0002 a0001c0001t0011 a0001c0003t0002 others(4): Show a0001c0001t0002 a0001c0001t0011 a0001c0003t0002 a0001c0010t0002 a0002c0004t0002 a0003c0005t0010 a0004c0006t0002	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0007 others(15): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0012 a0001c0001t0002g0014 a0001c0001t0002g0016 a0001c0001t0002g0017 a0001c0001t0002g0019 a0001c0001t0011g0005 a0001c0001t0011g0006 a0001c0003t0002g0003 a0001c0003t0002g0008 a0001c0010t0002g0011 a0002c0004t0002g0013 a0003c0005t0010g0015 a0004c0006t0002g0001	18	142	0.1268	28	c.-17 others(45): Show c.-17+3500_-17+3527dupTTACACATATATGTATATACACATATAT	FSTL5	ENSG00000168843.14	transcript	ENST00000306100.10	protein_coding	1/15			chr4	TogoVar
FSTL5_chr4_161378897_162169000	162160110	G G	GTGTAAAT others(21): Show GTGTAAATATATATATTTACACATATATA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0010 a0003c0005t0010	a0003c0005t0010g0018 a0003c0005t0010g0018	1	142	0.0070	28	c.-17 others(45): Show c.-17+3504_-17+3505insTATATATGTGTAAATATATATATTTACA	FSTL5	ENSG00000168843.14	transcript	ENST00000306100.10	protein_coding	1/15			chr4	TogoVar
FST_chr5_53475629_53492134	53476035	T T	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00423.hp1 HG00544.hp1 HG01099.hp2 others(11): Show HG00423.hp1 HG00544.hp1 HG01099.hp2 HG02074.hp1 HG02074.hp2 HG02970.hp1 NA18612.hp1 NA18978.hp1 NA18990.hp2 NA18992.hp2 NA19043.hp1 NA19064.hp1 NA19068.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(7): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0068 a0001c0001t0001g0074 a0001c0001t0004g0014	14	462	0.0303	28	c.-47 others(39): Show c.-4757_-4756insTATATATATATATATATATATATATATA	FST	ENSG00000134363.12	transcript	ENST00000256759.8	protein_coding		4593		chr5	TogoVar
FST_chr5_53475629_53492134	53476035	T T	TTTTATAT others(21): Show TTTTATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp1 HG04199.hp2 NA18954.hp2 others(4): Show HG01074.hp1 HG04199.hp2 NA18954.hp2 NA18987.hp1 NA19011.hp2 NA19043.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0019 others(3): Show a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0001g0019 a0001c0001t0001g0031 a0001c0001t0001g0047 a0001c0002t0001g0050	7	462	0.0152	28	c.-47 others(39): Show c.-4757_-4756insTTTATATATATATATATATATATATATA	FST	ENSG00000134363.12	transcript	ENST00000256759.8	protein_coding		4593		chr5	TogoVar
FST_chr5_53475629_53492134	53476035	T T	TTTTATAT others(21): Show TTTTATATATATATATATATATATATATG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19086.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	462	0.0022	28	c.-47 others(39): Show c.-4757_-4756insTTTATATATATATATATATATATATATG	FST	ENSG00000134363.12	transcript	ENST00000256759.8	protein_coding		4593		chr5	TogoVar
FTCD_chr21_46131779_46160579	46135886	C C	CCCCTCCC others(21): Show CCCCTCCCCAGCCTCCCCTCCCCAGCGTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp2 HG02630.hp2 HG02717.hp1 others(5): Show HG01884.hp2 HG02630.hp2 HG02717.hp1 HG02922.hp2 HG03486.hp1 HG06807.hp1 NA19043.hp2 NA19240.hp1	a0001 a0003 a0009 a0001 a0003 a0009	a0001c0003 a0001c0010 a0003c0007 others(1): Show a0001c0003 a0001c0010 a0003c0007 a0009c0020	a0001c0003t0003 a0001c0010t0002 a0003c0007t0002 others(1): Show a0001c0003t0003 a0001c0010t0002 a0003c0007t0002 a0009c0020t0003	a0001c0003t0003g0106 a0001c0003t0003g0110 a0001c0010t0002g0199 others(5): Show a0001c0003t0003g0106 a0001c0003t0003g0110 a0001c0010t0002g0199 a0001c0010t0002g0200 a0003c0007t0002g0077 a0003c0007t0002g0078 a0003c0007t0002g0136 a0009c0020t0003g0130	8	230	0.0348	28	c.11 others(39): Show c.1100_*1101insAACGCTGGGGAGGGGAGGCTGGGGAGGG	FTCD	ENSG00000160282.15	transcript	ENST00000397746.8	protein_coding		892		chr21	TogoVar
FTHL17_chrX_31066233_31077041	31067022	C C	CACACACA others(21): Show CACACACATATGTGTATATACACACACAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19056.hp1 NA19062.hp1 NA19080.hp2 NA19056.hp1 NA19062.hp1 NA19080.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0000 a0001c0002t0001g0000	3	336	0.0089	28	c.43 others(39): Show c.4379_*4380insATGTGTGTGTATATACACATATGTGTGT	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		4210		chrX	TogoVar
FTHL17_chrX_31066233_31077041	31067102	C C	CACATACA others(21): Show CACATACACACATATACACACATATGTGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG02258.hp1 HG02451.hp1 others(2): Show HG02257.hp1 HG02258.hp1 HG02451.hp1 HG02723.hp1 HG03098.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0000 a0001c0002t0001g0000	5	336	0.0149	28	c.42 others(39): Show c.4299_*4300insCCACATATGTGTGTATATGTGTGTATGT	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		4130		chrX	TogoVar
FTHL17_chrX_31066233_31077041	31067102	C C	CATATACA others(21): Show CATATACACACATATACACACATATGTGG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	336	0.0030	28	c.42 others(39): Show c.4299_*4300insCCACATATGTGTGTATATGTGTGTATAT	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		4130		chrX	TogoVar
FTHL17_chrX_31066233_31077041	31067102	C C	CATATACA others(21): Show CATATACACACATATACACACATATGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	336	0.0030	28	c.42 others(39): Show c.4299_*4300insACACATATGTGTGTATATGTGTGTATAT	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		4130		chrX	TogoVar
FTHL17_chrX_31066233_31077041	31067130	T T	TATATACA others(21): Show TATATACACACATATACACACATATGTGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03491.hp2 HG03688.hp1 HG04115.hp1 HG03491.hp2 HG03688.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	3	336	0.0089	28	c.42 others(39): Show c.4271_*4272insCCACATATGTGTGTATATGTGTGTATAT	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		4102		chrX	TogoVar
FTHL17_chrX_31066233_31077041	31067332	A A	ATATATAC others(21): Show ATATATACACATACACACATACACGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01123.hp1 HG01123.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	336	0.0030	28	c.40 others(39): Show c.4069_*4070insCACACGTGTATGTGTGTATGTGTATATA	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		3900		chrX	TogoVar
FTHL17_chrX_31066233_31077041	31067371	T T	TACACACA others(21): Show TACACACACGTGTGTATATACACATACGC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	336	0.0030	28	c.40 others(39): Show c.4030_*4031insGCGTATGTGTATATACACACGTGTGTGT	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		3861		chrX	TogoVar
FTHL17_chrX_31066233_31077041	31067371	T T	TACACACA others(21): Show TACACACACGTGTGTATATACACATATGC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00741.hp2 HG02056.hp1 HG03654.hp1 others(1): Show HG00741.hp2 HG02056.hp1 HG03654.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	4	336	0.0119	28	c.40 others(39): Show c.4030_*4031insGCATATGTGTATATACACACGTGTGTGT	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		3861		chrX	TogoVar
FTHL17_chrX_31066233_31077041	31067447	C C	CATGCACA others(21): Show CATGCACACACACGTGTGTATATACACAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	336	0.0030	28	c.39 others(39): Show c.3954_*3955insATGTGTATATACACACGTGTGTGTGCAT	FTHL17	ENSG00000132446.7	transcript	ENST00000359202.5	protein_coding		3785		chrX	TogoVar
FTO_chr16_53699156_54126941	53950155	T T	TAAAAAAA others(21): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0163 a0001c0001t0003g0163	1	194	0.0052	28	c.136 others(49): Show c.1364+16070_1364+16071insAAAAAAAAAAAAAAAAAAAAAAAA AAAA	FTO	ENSG00000140718.22	transcript	ENST00000471389.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
FTO_chr16_53699156_54126941	53950155	T T	TAAAAAAA others(21): Show TAAAAAAAAAAAAAAAAAACAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0108 a0001c0001t0005g0108	1	194	0.0052	28	c.136 others(49): Show c.1364+16064_1364+16065insCAAAAAAAAAAAAAAAAAAAAAAA AAAA	FTO	ENSG00000140718.22	transcript	ENST00000471389.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar

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