Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
THNSL2_chr2_88165346_88191627	88182369	A A	ACATCTTT others(22): Show ACATCTTTTCATGTGCTCATTGGCCATCTG	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0051 a0002c0002t0001g0051	1	54	0.0185	29	c.803 others(44): Show c.803-329_803-301dupCATCTTTTCATGTGCTCATTGGCCATCTG	THNSL2	ENSG00000144115.18	transcript	ENST00000674334.2	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr2	TogoVar
THOP1_chr19_2780503_2820807	2817871	G G	GACTAAGA others(22): Show GACTAAGAACAGAGCAGGTGACCAAGGATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp1 HG01891.hp2 HG02145.hp1 others(15): Show HG01243.hp1 HG01891.hp2 HG02145.hp1 HG02258.hp2 HG02622.hp2 HG02647.hp2 HG02809.hp2 HG02896.hp1 HG02922.hp2 HG02970.hp1 HG03098.hp1 HG03130.hp2 HG03453.hp2 HG03540.hp1 NA18522.hp1 NA18906.hp2 NA19030.hp2 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0006 others(1): Show a0001c0001 a0002c0002 a0003c0006 a0003c0007	a0001c0001t0004 a0001c0001t0032 a0002c0002t0004 others(5): Show a0001c0001t0004 a0001c0001t0032 a0002c0002t0004 a0002c0002t0008 a0002c0002t0011 a0003c0006t0008 a0003c0007t0008 a0003c0007t0022	a0001c0001t0004g0022 a0001c0001t0004g0055 a0001c0001t0004g0058 others(12): Show a0001c0001t0004g0022 a0001c0001t0004g0055 a0001c0001t0004g0058 a0001c0001t0004g0059 a0001c0001t0032g0057 a0002c0002t0004g0015 a0002c0002t0004g0074 a0002c0002t0008g0014 a0002c0002t0011g0063 a0002c0002t0011g0064 a0002c0002t0011g0066 a0003c0006t0008g0061 a0003c0006t0008g0062 a0003c0007t0008g0065 a0003c0007t0022g0056	18	370	0.0487	29	c.45 others(40): Show c.4595_*4596insACTAAGAACAGAGCAGGTGACCAAGGATA	THOP1	ENSG00000172009.15	transcript	ENST00000307741.11	protein_coding		2065		chr19	TogoVar
THOP1_chr19_2780503_2820807	2818014	G G	GACTAAGG others(22): Show GACTAAGGTCAGAGCAGGTGACCAAGGATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp1 HG02809.hp2 HG03540.hp1 HG02145.hp1 HG02809.hp2 HG03540.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0011 a0002c0002t0011	a0002c0002t0011g0063 a0002c0002t0011g0064 a0002c0002t0011g0066 a0002c0002t0011g0063 a0002c0002t0011g0064 a0002c0002t0011g0066	3	370	0.0081	29	c.47 others(40): Show c.4738_*4739insACTAAGGTCAGAGCAGGTGACCAAGGATA	THOP1	ENSG00000172009.15	transcript	ENST00000307741.11	protein_coding		2208		chr19	TogoVar
THOP1_chr19_2780503_2820807	2820684	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0210 a0001c0001t0002g0210	1	370	0.0027	29	c.74 others(40): Show c.7408_*7409insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	THOP1	ENSG00000172009.15	transcript	ENST00000307741.11	protein_coding		4878		chr19	TogoVar
THRAP3_chr1_36219443_36310357	36253760	A A	ATTTTTTT others(22): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02683.hp2 HG02004.hp1 HG02683.hp2	a0001 a0002 a0001 a0002	a0001c0006 a0002c0003 a0001c0006 a0002c0003	a0001c0006t0001 a0002c0003t0003 a0001c0006t0001 a0002c0003t0003	a0001c0006t0001g0189 a0002c0003t0003g0237 a0001c0006t0001g0189 a0002c0003t0003g0237	2	252	0.0079	29	c.-13 others(48): Show c.-134-5603_-134-5602insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	THRAP3	ENSG00000054118.15	transcript	ENST00000354618.10	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr1	TogoVar
THRB_chr3_24112153_24499850	24188858	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0039	a0001c0001t0039g0132 a0001c0001t0039g0132	1	178	0.0056	29	c.283 others(46): Show c.283+1215_283+1216insATATATATATATATATATATATATATAT A	THRB	ENSG00000151090.20	transcript	ENST00000646209.2	protein_coding	5/10			chr3	TogoVar
THSD4_chr15_71110471_71788383	71172700	T T	TATATATA others(22): Show TATATATATATATATATATATATATGTGAC	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0007 a0001c0006t0007	a0001c0006t0007g0030 a0001c0006t0007g0030	1	116	0.0086	29	c.99+ others(46): Show c.99+17792_99+17793insGTGACATATATATATATATATATATATA T	THSD4	ENSG00000187720.15	transcript	ENST00000261862.8	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr15	TogoVar
THSD4_chr15_71110471_71788383	71326700	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18981.hp2 NA18981.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0012 a0001c0002t0002g0012	1	116	0.0086	29	c.101 others(50): Show c.1015+69986_1015+69987insAAAAAAAAAAAAATATATATATAT ATATA	THSD4	ENSG00000187720.15	transcript	ENST00000261862.8	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr15	TogoVar
THSD4_chr15_71110471_71788383	71326700	A A	AAAAATAT others(22): Show AAAAATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0019 a0001c0019	a0001c0019t0003 a0001c0019t0003	a0001c0019t0003g0093 a0001c0019t0003g0093	1	116	0.0086	29	c.101 others(50): Show c.1015+69986_1015+69987insAAATATATATATATATATATATAT ATATA	THSD4	ENSG00000187720.15	transcript	ENST00000261862.8	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr15	TogoVar
THSD4_chr15_71110471_71788383	71698624	A A	AATATATA others(22): Show AATATATACATGCATGTATATATTTCATGT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00099.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0017 a0001c0004t0017	a0001c0004t0017g0032 a0001c0004t0017g0032	1	116	0.0086	29	c.135 others(50): Show c.1358-29903_1358-29902insTTCATGTATATATACATGCATGTA TATAT	THSD4	ENSG00000187720.15	transcript	ENST00000261862.8	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr15	TogoVar
THSD4_chr15_71110471_71788383	71698653	A A	AATATATA others(22): Show AATATATACATGCATGTATATATTTCATGT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0007 a0001c0008t0007	a0001c0008t0007g0081 a0001c0008t0007g0081	1	116	0.0086	29	c.135 others(50): Show c.1358-29870_1358-29869insTGTATATATACATGCATGTATATA TTTCA	THSD4	ENSG00000187720.15	transcript	ENST00000261862.8	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr15	TogoVar
THSD4_chr15_71110471_71788383	71724288	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18981.hp1 NA18981.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0066 a0001c0002t0006g0066	1	116	0.0086	29	c.135 others(48): Show c.1358-4261_1358-4260insATATATATATATATATATATATATAT ATA	THSD4	ENSG00000187720.15	transcript	ENST00000261862.8	protein_coding	8/17			chr15	TogoVar
THSD7A_chr7_11365365_11837198	11509821	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02055.hp1 NA18906.hp2 others(2): Show HG01261.hp2 HG02055.hp1 NA18906.hp2 NA19043.hp1 NA19063.hp2	a0001 a0003 a0001 a0003	a0001c0003 a0001c0045 a0003c0004 a0001c0003 a0001c0045 a0003c0004	a0001c0003t0003 a0001c0003t0056 a0001c0045t0051 others(1): Show a0001c0003t0003 a0001c0003t0056 a0001c0045t0051 a0003c0004t0002	a0001c0003t0003g0078 a0001c0003t0003g0088 a0001c0003t0056g0162 others(2): Show a0001c0003t0003g0078 a0001c0003t0003g0088 a0001c0003t0056g0162 a0001c0045t0051g0150 a0003c0004t0002g0126	5	180	0.0278	29	c.182 others(50): Show c.1823-27840_1823-27839insTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	THSD7A	ENSG00000005108.17	transcript	ENST00000423059.9	protein_coding	6/27			chr7	TogoVar
THSD7A_chr7_11365365_11837198	11769153	A A	ATATATAT others(22): Show ATATATATATATATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0054 a0001c0011t0054	a0001c0011t0054g0137 a0001c0011t0054g0137	1	180	0.0056	29	c.190 others(48): Show c.190+62603_190+62604insAAAAAAAAAAAAAAAAATATATATAT ATA	THSD7A	ENSG00000005108.17	transcript	ENST00000423059.9	protein_coding	1/27			chr7	TogoVar
TH_chr11_2158929_2176815	2160209	C C	CTTCCCCC others(22): Show CTTCCCCCGCCCCGGGGCAGCGTCACAGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0002 a0002c0001t0001g0002	1	388	0.0026	29	c.39 others(40): Show c.3995_*4023dupCACTGTGACGCTGCCCCGGGGCGGGGGAA	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		3719		chr11	TogoVar
TH_chr11_2158929_2176815	2161579	G G	GACCCCTG others(22): Show GACCCCTGTCCCCAGGACCCCTGTCCCCAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01074.hp2 HG03453.hp2 HG01074.hp2 HG03453.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0007 a0001c0002t0001g0039 a0001c0002t0001g0007 a0001c0002t0001g0039	2	388	0.0052	29	c.26 others(40): Show c.2653_*2654insGTGGGGACAGGGGTCCTGGGGACAGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2349		chr11	TogoVar
TH_chr11_2158929_2176815	2161607	C C	CACCCCTG others(22): Show CACCCCTGTCCCCACACCCCTGTCCCCGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0014 a0001c0003t0001g0014	1	388	0.0026	29	c.26 others(40): Show c.2625_*2626insCCCGGGGACAGGGGTGTGGGGACAGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2321		chr11	TogoVar
TH_chr11_2158929_2176815	2161664	C C	CACCCCTG others(22): Show CACCCCTGTCCCCACACCCCTGTCCCCGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0007 a0001c0002t0001g0007	1	388	0.0026	29	c.25 others(40): Show c.2568_*2569insCCCGGGGACAGGGGTGTGGGGACAGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2264		chr11	TogoVar
TH_chr11_2158929_2176815	2161677	A A	ACACCCCT others(22): Show ACACCCCTGTCCCCACACCCCTGTCCCCGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0020 a0001c0004t0001g0020	1	388	0.0026	29	c.25 others(40): Show c.2555_*2556insCCGGGGACAGGGGTGTGGGGACAGGGGTG	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2251		chr11	TogoVar
TH_chr11_2158929_2176815	2161678	G G	GGACCCCT others(22): Show GGACCCCTGTCCTCAGACCCCCGTCCCCAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0015 a0001c0002t0001g0015	1	388	0.0026	29	c.25 others(40): Show c.2554_*2555insGTGGGGACGGGGGTCTGAGGACAGGGGTC	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2250		chr11	TogoVar
TH_chr11_2158929_2176815	2161692	C C	CACCCCTA others(22): Show CACCCCTATCCCCAGACCCCTGTCCCCAGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01074.hp2 HG01074.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0007 a0001c0002t0001g0007	1	388	0.0026	29	c.25 others(40): Show c.2540_*2541insCCTGGGGACAGGGGTCTGGGGATAGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2236		chr11	TogoVar
TH_chr11_2158929_2176815	2161748	A A	AGACCCCT others(22): Show AGACCCCTGTCCCCACACCCCTGTCCCCGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp2 HG01346.hp2 HG01891.hp1 others(5): Show HG00558.hp2 HG01346.hp2 HG01891.hp1 HG02080.hp2 HG02135.hp1 NA18980.hp2 NA18998.hp2 NA19004.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0001 a0002c0001t0001g0001	8	388	0.0206	29	c.24 others(40): Show c.2484_*2485insCCGGGGACAGGGGTGTGGGGACAGGGGTC	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2180		chr11	TogoVar
TH_chr11_2158929_2176815	2161777	C C	CACCCCTG others(22): Show CACCCCTGTCCCCACACCCCTGTCCCCAGG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0014 a0001c0003t0001g0014	1	388	0.0026	29	c.24 others(40): Show c.2455_*2456insCCTGGGGACAGGGGTGTGGGGACAGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2151		chr11	TogoVar
TH_chr11_2158929_2176815	2161791	C C	CACCCCTG others(22): Show CACCCCTGTCCCCACACCCCTGTCCCCGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0007 a0001c0002t0001g0007	1	388	0.0026	29	c.24 others(40): Show c.2441_*2442insCCCGGGGACAGGGGTGTGGGGACAGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2137		chr11	TogoVar
TH_chr11_2158929_2176815	2161791	C C	CACCCCTG others(22): Show CACCCCTGTCCCCGGACCCCTGTCCCCGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02970.hp2 HG03195.hp1 HG02970.hp2 HG03195.hp1	a0001 a0001	a0001c0002 a0001c0011 a0001c0002 a0001c0011	a0001c0002t0002 a0001c0011t0002 a0001c0002t0002 a0001c0011t0002	a0001c0002t0002g0048 a0001c0011t0002g0087 a0001c0002t0002g0048 a0001c0011t0002g0087	2	388	0.0052	29	c.24 others(40): Show c.2441_*2442insCCCGGGGACAGGGGTCCGGGGACAGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2137		chr11	TogoVar
TH_chr11_2158929_2176815	2161876	C C	CACCCCTG others(22): Show CACCCCTGTCCCCACACCCCTGTCCCCGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp1 HG02148.hp1 HG02622.hp2 others(2): Show HG01257.hp1 HG02148.hp1 HG02622.hp2 HG04199.hp1 NA18977.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0002 a0002c0001 a0003c0010 others(1): Show a0001c0002 a0002c0001 a0003c0010 a0005c0014	a0001c0002t0001 a0002c0001t0001 a0003c0010t0001 others(1): Show a0001c0002t0001 a0002c0001t0001 a0003c0010t0001 a0005c0014t0001	a0001c0002t0001g0003 a0002c0001t0001g0001 a0002c0001t0001g0077 others(2): Show a0001c0002t0001g0003 a0002c0001t0001g0001 a0002c0001t0001g0077 a0003c0010t0001g0036 a0005c0014t0001g0068	5	388	0.0129	29	c.23 others(40): Show c.2356_*2357insCCCGGGGACAGGGGTGTGGGGACAGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2052		chr11	TogoVar
TH_chr11_2158929_2176815	2161916	C C	CCACACCC others(22): Show CCACACCCCTGTCCCCGGGACCCCTGTCCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00544.hp2 HG00609.hp1 others(57): Show HG00323.hp2 HG00544.hp2 HG00609.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01081.hp2 HG01099.hp2 HG01106.hp2 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp2 HG01358.hp2 HG01361.hp2 HG01496.hp1 HG01516.hp1 HG01928.hp2 HG01943.hp1 HG01975.hp2 HG01978.hp1 HG01981.hp1 HG02040.hp2 HG02273.hp2 HG02300.hp1 HG02698.hp2 HG02735.hp2 HG03490.hp1 HG03492.hp1 HG03669.hp1 HG04115.hp2 HG04204.hp2 NA18612.hp2 NA18940.hp2 NA18942.hp1 NA18945.hp1 NA18956.hp1 NA18964.hp1 NA18965.hp1 NA18967.hp1 NA18969.hp1 NA18970.hp1 NA18971.hp2 NA18975.hp2 NA18983.hp1 NA18985.hp1 NA18994.hp2 NA19000.hp2 NA19004.hp1 NA19009.hp2 NA19057.hp1 NA19070.hp2 NA19080.hp2 NA19082.hp1 NA20805.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0001c0006 others(1): Show a0001c0002 a0001c0003 a0001c0006 a0002c0001	a0001c0002t0001 a0001c0003t0001 a0001c0006t0001 others(1): Show a0001c0002t0001 a0001c0003t0001 a0001c0006t0001 a0002c0001t0001	a0001c0002t0001g0003 a0001c0002t0001g0005 a0001c0002t0001g0028 others(15): Show a0001c0002t0001g0003 a0001c0002t0001g0005 a0001c0002t0001g0028 a0001c0002t0001g0030 a0001c0002t0001g0033 a0001c0002t0001g0040 a0001c0002t0001g0044 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0049 a0001c0002t0001g0053 a0001c0003t0001g0004 a0001c0006t0001g0022 a0002c0001t0001g0001 a0002c0001t0001g0002 a0002c0001t0001g0006 a0002c0001t0001g0080 a0002c0001t0001g0092	60	388	0.1546	29	c.23 others(40): Show c.2316_*2317insAGGACAGGGGTCCCGGGGACAGGGGTGTG	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		2012		chr11	TogoVar
TH_chr11_2158929_2176815	2161948	C C	CACCCCCT others(22): Show CACCCCCTGTCCCCAGGACCCTGTCCCCGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0001 a0002c0001t0001g0001	1	388	0.0026	29	c.22 others(40): Show c.2284_*2285insCCGGGGACAGGGTCCTGGGGACAGGGGGT	TH	ENSG00000180176.15	transcript	ENST00000352909.8	protein_coding		1980		chr11	TogoVar
TIAM1_chr21_31113418_31349261	31222707	A A	ATATATAT others(22): Show ATATATATATATATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0007 a0002c0003t0003g0007	1	212	0.0047	29	c.199 others(46): Show c.1995+698_1995+699insAAAAAAAAAAAAAAAAATATATATATAT A	TIAM1	ENSG00000156299.15	transcript	ENST00000541036.6	protein_coding	8/27			chr21	TogoVar
TIAM2_chr6_154990315_155262723	155027573	A A	AATATATG others(22): Show AATATATGTACTGTGTTACATATATACTAT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0008 a0001c0009t0008	a0001c0009t0008g0077 a0001c0009t0008g0077	1	230	0.0044	29	c.-20 others(50): Show c.-209+32087_-209+32115dupTGTACTGTGTTACATATATACTAT ATATA	TIAM2	ENSG00000146426.19	transcript	ENST00000682666.1	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr6	TogoVar
TIAM2_chr6_154990315_155262723	155028366	A A	AATATATA others(22): Show AATATATATACTGTGTTACATATATACTAC	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01074.hp2 HG01175.hp1 HG01071.hp1 HG01074.hp2 HG01175.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0003 a0001c0001 a0001c0004 a0002c0003	a0001c0001t0014 a0001c0004t0002 a0002c0003t0001 a0001c0001t0014 a0001c0004t0002 a0002c0003t0001	a0001c0001t0014g0228 a0001c0004t0002g0151 a0002c0003t0001g0012 a0001c0001t0014g0228 a0001c0004t0002g0151 a0002c0003t0001g0012	3	230	0.0130	29	c.-20 others(50): Show c.-209+32898_-209+32926dupTACTACATATATATACTGTGTTAC ATATA	TIAM2	ENSG00000146426.19	transcript	ENST00000682666.1	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr6	TogoVar
TIAM2_chr6_154990315_155262723	155218998	G G	GCCGTGTT others(22): Show GCCGTGTTCTTGACCATCTCAGCCGCCCAC	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02895.hp1 HG02897.hp1 others(3): Show HG02647.hp2 HG02895.hp1 HG02897.hp1 HG02965.hp1 HG03139.hp2 NA19240.hp1	a0001 a0005 a0009 others(1): Show a0001 a0005 a0009 a0024	a0001c0004 a0001c0009 a0005c0062 others(2): Show a0001c0004 a0001c0009 a0005c0062 a0009c0019 a0024c0037	a0001c0004t0002 a0001c0009t0008 a0005c0062t0003 others(2): Show a0001c0004t0002 a0001c0009t0008 a0005c0062t0003 a0009c0019t0001 a0024c0037t0012	a0001c0004t0002g0115 a0001c0009t0008g0077 a0005c0062t0003g0175 others(3): Show a0001c0004t0002g0115 a0001c0009t0008g0077 a0005c0062t0003g0175 a0009c0019t0001g0073 a0009c0019t0001g0074 a0024c0037t0012g0184	6	230	0.0261	29	c.316 others(48): Show c.3168+7743_3168+7771dupCGCCCACCCGTGTTCTTGACCATCTC AGC	TIAM2	ENSG00000146426.19	transcript	ENST00000682666.1	protein_coding	15/26		INFO_REALIGN_3_PRIME	chr6	TogoVar
TIAM2_chr6_154990315_155262723	155219023	C C	CCCACCCG others(22): Show CCCACCCGTGTTCTTGACCATCTCAGCCAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02258.hp1 HG02572.hp1 others(1): Show HG02109.hp1 HG02258.hp1 HG02572.hp1 HG03225.hp1	a0001 a0026 a0027 a0001 a0026 a0027	a0001c0009 a0026c0061 a0027c0064 a0001c0009 a0026c0061 a0027c0064	a0001c0009t0012 a0001c0009t0013 a0026c0061t0031 others(1): Show a0001c0009t0012 a0001c0009t0013 a0026c0061t0031 a0027c0064t0034	a0001c0009t0012g0189 a0001c0009t0013g0203 a0026c0061t0031g0064 others(1): Show a0001c0009t0012g0189 a0001c0009t0013g0203 a0026c0061t0031g0064 a0027c0064t0034g0113	4	230	0.0174	29	c.316 others(48): Show c.3168+7743_3168+7744insATCCACCCGTGTTCTTGACCATCTCA GCC	TIAM2	ENSG00000146426.19	transcript	ENST00000682666.1	protein_coding	15/26		INFO_REALIGN_3_PRIME	chr6	TogoVar
TIAM2_chr6_154990315_155262723	155219023	C C	CCCACCCG others(22): Show CCCACCCGTGTTCTTGACCATCTCAGCCGT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0008 a0001c0009t0008	a0001c0009t0008g0077 a0001c0009t0008g0077	1	230	0.0044	29	c.316 others(48): Show c.3168+7744_3168+7745insTCCACCCGTGTTCTTGACCATCTCAG CCG	TIAM2	ENSG00000146426.19	transcript	ENST00000682666.1	protein_coding	15/26		INFO_REALIGN_3_PRIME	chr6	TogoVar
TIMELESS_chr12_56411363_56454426	56420029	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0192 a0001c0003t0002g0192	1	402	0.0025	29	c.322 others(46): Show c.3228+539_3228+540insATATATATATATATTTTTTTTTTTTTTT T	TIMELESS	ENSG00000111602.12	transcript	ENST00000553532.6	protein_coding	26/28			chr12	TogoVar
TIMELESS_chr12_56411363_56454426	56420029	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0358 a0001c0001t0002g0358	1	402	0.0025	29	c.322 others(46): Show c.3228+539_3228+540insATATATATATATATATATTTTTTTTTTT T	TIMELESS	ENSG00000111602.12	transcript	ENST00000553532.6	protein_coding	26/28			chr12	TogoVar
TIMELESS_chr12_56411363_56454426	56420029	A A	AAAAAAAA others(22): Show AAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18940.hp2 NA18940.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0149 a0001c0003t0002g0149	1	402	0.0025	29	c.322 others(46): Show c.3228+539_3228+540insATATATATATATATATATATATTTTTTT T	TIMELESS	ENSG00000111602.12	transcript	ENST00000553532.6	protein_coding	26/28			chr12	TogoVar
TIMM22_chr17_992129_1008671	993563	C C	CCCTCACA others(22): Show CCCTCACATAATCCACCCTCACATAATCCA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0011 a0001c0001t0009g0011	1	439	0.0023	29	c.-35 others(40): Show c.-3580_-3579insCCTCACATAATCCACCCTCACATAATCCA	TIMM22	ENSG00000177370.5	transcript	ENST00000327158.5	protein_coding		3565		chr17	TogoVar
TIMM22_chr17_992129_1008671	994082	A A	ACCTCACA others(22): Show ACCTCACATAATCCACCTCACATAATCCAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0055 a0001c0001t0006g0055	1	439	0.0023	29	c.-30 others(40): Show c.-3061_-3060insCCTCACATAATCCACCTCACATAATCCAC	TIMM22	ENSG00000177370.5	transcript	ENST00000327158.5	protein_coding		3046		chr17	TogoVar
TIMM22_chr17_992129_1008671	994228	C C	CCCTCACA others(22): Show CCCTCACATAATCCACCCTCACATAATCCA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00140.hp2 HG00280.hp1 others(55): Show HG00099.hp1 HG00140.hp2 HG00280.hp1 HG00408.hp2 HG00438.hp2 HG00544.hp1 HG00597.hp2 HG01081.hp1 HG01168.hp1 HG01169.hp2 HG01243.hp1 HG01515.hp2 HG01978.hp1 HG02080.hp1 HG02129.hp1 HG02132.hp2 HG02135.hp1 HG02155.hp2 HG02698.hp2 HG02717.hp1 HG03453.hp2 HG03491.hp1 HG03704.hp2 HG03942.hp2 HG04199.hp1 NA18522.hp1 NA18940.hp2 NA18942.hp1 NA18943.hp1 NA18944.hp1 NA18952.hp2 NA18956.hp2 NA18959.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18967.hp2 NA18973.hp2 NA18979.hp2 NA18980.hp2 NA18982.hp2 NA18989.hp1 NA18994.hp1 NA18995.hp2 NA19002.hp2 NA19004.hp2 NA19055.hp1 NA19055.hp2 NA19057.hp2 NA19064.hp2 NA19065.hp2 NA19068.hp2 NA19080.hp2 NA19082.hp2 NA19088.hp2 NA19090.hp1 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0001t0013 a0001c0001t0023 a0001c0001t0025 a0001c0001t0026 a0001c0001t0037	a0001c0001t0001g0001 a0001c0001t0002g0025 a0001c0001t0002g0046 others(13): Show a0001c0001t0001g0001 a0001c0001t0002g0025 a0001c0001t0002g0046 a0001c0001t0002g0072 a0001c0001t0002g0074 a0001c0001t0003g0087 a0001c0001t0004g0001 a0001c0001t0004g0009 a0001c0001t0004g0059 a0001c0001t0004g0060 a0001c0001t0009g0001 a0001c0001t0013g0001 a0001c0001t0023g0001 a0001c0001t0025g0001 a0001c0001t0026g0001 a0001c0001t0037g0040	58	439	0.1321	29	c.-29 others(40): Show c.-2915_-2914insCCTCACATAATCCACCCTCACATAATCCA	TIMM22	ENSG00000177370.5	transcript	ENST00000327158.5	protein_coding		2900		chr17	TogoVar
TIMM22_chr17_992129_1008671	994273	C C	CCTCGCAT others(22): Show CCTCGCATAATCCACCCACCCTCACATAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0110 a0001c0001t0008g0110	1	439	0.0023	29	c.-28 others(40): Show c.-2870_-2869insCTCGCATAATCCACCCACCCTCACATAAT	TIMM22	ENSG00000177370.5	transcript	ENST00000327158.5	protein_coding		2855		chr17	TogoVar
TIMM9_chr14_58403495_58432531	58404119	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02080.hp2 NA18962.hp2 NA18964.hp1 others(2): Show HG02080.hp2 NA18962.hp2 NA18964.hp1 NA19057.hp1 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0022 a0001c0001t0001g0094 a0001c0001t0001g0212 others(2): Show a0001c0001t0001g0022 a0001c0001t0001g0094 a0001c0001t0001g0212 a0001c0001t0001g0226 a0001c0001t0003g0026	5	378	0.0132	29	c.49 others(40): Show c.4914_*4915insAAAAATATATATATATATATATATATATA	TIMM9	ENSG00000100575.14	transcript	ENST00000395159.7	protein_coding		4375		chr14	TogoVar
TIMM9_chr14_58403495_58432531	58404119	A A	ATATATAT others(22): Show ATATATATATATATATATATATATTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp1 HG01169.hp2 HG02970.hp2 others(2): Show HG00140.hp1 HG01169.hp2 HG02970.hp2 NA19066.hp1 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0023 a0001c0001t0001g0042 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0023 a0001c0001t0001g0042 a0001c0001t0001g0194 a0001c0001t0001g0234	5	378	0.0132	29	c.49 others(40): Show c.4914_*4915insAAAAAAATATATATATATATATATATATA	TIMM9	ENSG00000100575.14	transcript	ENST00000395159.7	protein_coding		4375		chr14	TogoVar
TIMM9_chr14_58403495_58432531	58404119	A A	ATATATAT others(22): Show ATATATATATATATATATATATTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01346.hp2 HG01934.hp2 HG02027.hp2 others(5): Show HG01346.hp2 HG01934.hp2 HG02027.hp2 HG02071.hp1 HG04115.hp2 NA18956.hp2 NA18999.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0113 a0001c0001t0001g0135 others(5): Show a0001c0001t0001g0013 a0001c0001t0001g0113 a0001c0001t0001g0135 a0001c0001t0001g0160 a0001c0001t0001g0191 a0001c0001t0001g0195 a0001c0001t0001g0204 a0001c0001t0001g0207	8	378	0.0212	29	c.49 others(40): Show c.4914_*4915insAAAAAAAAATATATATATATATATATATA	TIMM9	ENSG00000100575.14	transcript	ENST00000395159.7	protein_coding		4375		chr14	TogoVar
TIMM9_chr14_58403495_58432531	58404119	A A	ATATATAT others(22): Show ATATATATATATATATATATTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19012.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0250 a0001c0001t0001g0250	1	378	0.0027	29	c.49 others(40): Show c.4914_*4915insAAAAAAAAAAATATATATATATATATATA	TIMM9	ENSG00000100575.14	transcript	ENST00000395159.7	protein_coding		4375		chr14	TogoVar
TIMM9_chr14_58403495_58432531	58404119	A A	ATATATAT others(22): Show ATATATATATATATATATTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01256.hp2 HG01256.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0129 a0001c0001t0001g0129	1	378	0.0027	29	c.49 others(40): Show c.4914_*4915insAAAAAAAAAAAAATATATATATATATATA	TIMM9	ENSG00000100575.14	transcript	ENST00000395159.7	protein_coding		4375		chr14	TogoVar
TIMM9_chr14_58403495_58432531	58404119	A A	ATATATAT others(22): Show ATATATATATATATATTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00597.hp2 NA19055.hp1 HG00597.hp2 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0110 a0001c0001t0001g0002 a0001c0001t0001g0110	2	378	0.0053	29	c.49 others(40): Show c.4914_*4915insAAAAAAAAAAAAAAATATATATATATATA	TIMM9	ENSG00000100575.14	transcript	ENST00000395159.7	protein_coding		4375		chr14	TogoVar
TIMM9_chr14_58403495_58432531	58404119	A A	ATATATAT others(22): Show ATATATATATATATTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0174 a0001c0001t0001g0174	1	378	0.0027	29	c.49 others(40): Show c.4914_*4915insAAAAAAAAAAAAAAAAATATATATATATA	TIMM9	ENSG00000100575.14	transcript	ENST00000395159.7	protein_coding		4375		chr14	TogoVar
TK2_chr16_66503003_66555122	66505213	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0013 a0001c0001t0004g0013	1	300	0.0033	29	c.67 others(40): Show c.6754_*6755insTATATATATATATATATATATATATATAT	TK2	ENSG00000166548.17	transcript	ENST00000544898.6	protein_coding		2789		chr16	TogoVar
TLDC2_chr20_36871138_36899235	36890398	C C	CTTTCTTT others(22): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG03704.hp1 HG03831.hp2 HG04199.hp1 others(1): Show HG03704.hp1 HG03831.hp2 HG04199.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 others(1): Show a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0155	4	384	0.0104	29	c.17 others(46): Show c.17+1018_*17+1019insCTTTCTTTTCTTTCTTTCTTTCTTTCTT T	TLDC2	ENSG00000101342.10	transcript	ENST00000217320.8	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr20	TogoVar

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