Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TPK1_chr7_144446941_144841053	144805105	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02897.hp2 NA18612.hp2 HG02897.hp2 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0068 a0001c0001t0001g0014 a0001c0001t0001g0068	2	118	0.0170	29	c.43+ others(46): Show c.43+30454_43+30455insTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	TPK1	ENSG00000196511.15	transcript	ENST00000360057.7	protein_coding	2/8			chr7	TogoVar
TPO_chr2_1408463_1548673	1480744	G G	GCTGCATC others(22): Show GCTGCATCCGTCCACACCACCTCCCTCCTC	intron_variant intron_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0030	1	130	0.0077	29	c.133 others(48): Show c.1338+3162_1338+3190dupCCCTCCTCCTGCATCCGTCCACACCA CCT	TPO	ENSG00000115705.22	transcript	ENST00000329066.9	protein_coding	8/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
TPO_chr2_1408463_1548673	1480815	A A	ACACCACG others(22): Show ACACCACGTCCCTGCTGCTGCGTCTGTCCT	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00609.hp2 HG00544.hp1 HG00609.hp2	a0007 a0017 a0007 a0017	a0007c0022 a0017c0033 a0007c0022 a0017c0033	a0007c0022t0002 a0017c0033t0001 a0007c0022t0002 a0017c0033t0001	a0007c0022t0002g0034 a0017c0033t0001g0101 a0007c0022t0002g0034 a0017c0033t0001g0101	2	130	0.0154	29	c.133 others(48): Show c.1338+3217_1338+3245dupCGTCCCTGCTGCTGCGTCTGTCCTCA CCA	TPO	ENSG00000115705.22	transcript	ENST00000329066.9	protein_coding	8/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
TPO_chr2_1408463_1548673	1511315	C C	CAGCCCTG others(22): Show CAGCCCTGCAGACTGGGGGTGCCACAGCAA	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0019 a0019	a0019c0024 a0019c0024	a0019c0024t0005 a0019c0024t0005	a0019c0024t0005g0009 a0019c0024t0005g0009	1	130	0.0077	29	c.251 others(48): Show c.2519-5541_2519-5540insAAAGCCCTGCAGACTGGGGGTGCCAC AGC	TPO	ENSG00000115705.22	transcript	ENST00000329066.9	protein_coding	14/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
TPO_chr2_1408463_1548673	1511517	G G	GCAGCCCT others(22): Show GCAGCCCTGCAGACTGGGGGTGCCACAGCA	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG02080.hp1 HG02145.hp1 others(4): Show HG00408.hp2 HG02080.hp1 HG02145.hp1 HG02257.hp1 HG02615.hp1 HG03453.hp1 HG04204.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0001c0004 a0002c0002 others(1): Show a0001c0001 a0001c0004 a0002c0002 a0006c0009	a0001c0001t0002 a0001c0001t0005 a0001c0004t0001 others(3): Show a0001c0001t0002 a0001c0001t0005 a0001c0004t0001 a0002c0002t0002 a0002c0002t0003 a0006c0009t0001	a0001c0001t0002g0021 a0001c0001t0002g0036 a0001c0001t0005g0073 others(4): Show a0001c0001t0002g0021 a0001c0001t0002g0036 a0001c0001t0005g0073 a0001c0004t0001g0113 a0002c0002t0002g0004 a0002c0002t0003g0127 a0006c0009t0001g0123	7	130	0.0539	29	c.251 others(48): Show c.2519-5349_2519-5348insGGTGCCACAGCACAGCCCTGCAGACT GGG	TPO	ENSG00000115705.22	transcript	ENST00000329066.9	protein_coding	14/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
TPO_chr2_1408463_1548673	1533343	T T	TGCAACCT others(22): Show TGCAACCTCCCGAAATCGCCCCCACTGTGA	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0019 a0019	a0019c0024 a0019c0024	a0019c0024t0005 a0019c0024t0005	a0019c0024t0005g0009 a0019c0024t0005g0009	1	130	0.0077	29	c.261 others(48): Show c.2619-7244_2619-7243insCCCGAAATCGCCCCCACTGTGAGCAA CCT	TPO	ENSG00000115705.22	transcript	ENST00000329066.9	protein_coding	15/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
TPO_chr2_1408463_1548673	1535420	G G	GTGTGCAA others(22): Show GTGTGCAACCTCCCCAAATCCCCCCCACTC	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG03209.hp2 HG02145.hp2 HG03209.hp2	a0000 a0007 a0000 a0007	a0000c0019 a0007c0020 a0000c0019 a0007c0020	a0000c0019t0004 a0007c0020t0004 a0000c0019t0004 a0007c0020t0004	a0000c0019t0004g0007 a0007c0020t0004g0018 a0000c0019t0004g0007 a0007c0020t0004g0018	2	130	0.0154	29	c.261 others(48): Show c.2619-5154_2619-5126dupCCCCCCACTCTGTGCAACCTCCCCAA ATC	TPO	ENSG00000115705.22	transcript	ENST00000329066.9	protein_coding	15/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
TPR_chr1_186306652_186380253	186327286	T T	TATATAAA others(22): Show TATATAAATATATTATATATTTATATATAA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01167.hp1 HG01169.hp2 HG00140.hp2 HG01167.hp1 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0034 a0001c0001t0002g0150 a0001c0001t0002g0034 a0001c0001t0002g0150	3	408	0.0074	29	c.588 others(46): Show c.5889+173_5889+174insTTATATATAAATATATAATATATTTATA T	TPR	ENSG00000047410.14	transcript	ENST00000367478.9	protein_coding	40/50			chr1	TogoVar
TPST2_chr22_26516996_26595132	26570717	C C	CCAGCATA others(22): Show CCAGCATACCCCACCTGCAGCTGGTAGCAG	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02109.hp2 HG02145.hp1 others(3): Show HG02055.hp2 HG02109.hp2 HG02145.hp1 HG02970.hp1 HG03209.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0012 a0002c0002t0001 a0002c0002t0012 a0001c0001t0012 a0002c0002t0001 a0002c0002t0012	a0001c0001t0012g0009 a0001c0001t0012g0010 a0001c0001t0012g0013 others(3): Show a0001c0001t0012g0009 a0001c0001t0012g0010 a0001c0001t0012g0013 a0001c0001t0012g0014 a0002c0002t0001g0012 a0002c0002t0012g0011	6	400	0.0150	29	c.-16 others(50): Show c.-161+19307_-161+19335dupCTGCTACCAGCTGCAGGTGGGGTA TGCTG	TPST2	ENSG00000128294.16	transcript	ENST00000338754.9	protein_coding	1/6			chr22	TogoVar
TPTE2_chr13_19417877_19566532	19565207	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0007 a0007	a0007c0010 a0007c0010	a0007c0010t0001 a0007c0010t0001	a0007c0010t0001g0136 a0007c0010t0001g0136	1	222	0.0045	29	c.-40 others(40): Show c.-4023_-4022insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	TPTE2	ENSG00000132958.19	transcript	ENST00000697147.1	protein_coding		3676		chr13	TogoVar
TRA2A_chr7_23499780_23536981	23517503	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0323 a0001c0001t0001g0323	1	399	0.0025	29	c.171 others(44): Show c.171-976_171-975insCTTTTTTTTTTTTTTTTTTTTTTTTTTTT	TRA2A	ENSG00000164548.12	transcript	ENST00000297071.9	protein_coding	2/7			chr7	TogoVar
TRABD2B_chr1_47755528_48002385	47803929	G G	GCAGACAC others(22): Show GCAGACACATTTAGTGGCAGGGTACTTGGA	intron_variant intron_variant	MODIFIER	NA18955.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0191 a0001c0001t0003g0191	1	244	0.0041	29	c.667 others(46): Show c.667-2311_667-2310insTCCAAGTACCCTGCCACTAAATGTGTCT G	TRABD2B	ENSG00000269113.4	transcript	ENST00000606738.3	protein_coding	2/6			chr1	TogoVar
TRAF3IP3_chr1_209751053_209787310	209765227	G G	GAGAGGAG others(22): Show GAGAGGAGAGAGAGAGAGAGGAAGGAAGGA	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0255 a0001c0002t0002g0255	1	444	0.0023	29	c.702 others(46): Show c.702+1642_702+1643insAGGAGAGAGAGAGAGAGGAAGGAAGGAA G	TRAF3IP3	ENSG00000009790.15	transcript	ENST00000367025.8	protein_coding	8/16		INFO_REALIGN_3_PRIME	chr1	TogoVar
TRAP1_chr16_3653037_3722524	3653806	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02293.hp2 HG02293.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0196 a0001c0001t0001g0196	1	412	0.0024	29	c.42 others(40): Show c.4294_*4322dupTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	TRAP1	ENSG00000126602.11	transcript	ENST00000246957.10	protein_coding		4230		chr16	TogoVar
TRAPPC2_chrX_13707245_13739620	13722208	C C	CAGCAAAA others(22): Show CAGCAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG03831.hp1 NA18981.hp1 others(1): Show HG01346.hp1 HG03831.hp1 NA18981.hp1 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0003 a0001c0001t0007	a0001c0001t0003g0050 a0001c0001t0003g0066 a0001c0001t0003g0068 others(1): Show a0001c0001t0003g0050 a0001c0001t0003g0066 a0001c0001t0003g0068 a0001c0001t0007g0067	4	326	0.0123	29	c.-19 others(46): Show c.-19-2227_-19-2226insTTTTTTTTTTTTTTTTTTTTTTTTTTGC T	TRAPPC2	ENSG00000196459.15	transcript	ENST00000380579.6	protein_coding	2/5			chrX	TogoVar
TRAPPC3L_chr6_116489989_116550684	116494961	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0273 a0001c0001t0001g0273	1	360	0.0028	29	c.19 others(40): Show c.1992_*1993insAAATATATATATATATATATATATATATA	TRAPPC3L	ENSG00000173626.10	transcript	ENST00000368602.4	protein_coding		27		chr6	TogoVar
TRAPPC3L_chr6_116489989_116550684	116494961	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0256 a0001c0001t0001g0256	1	360	0.0028	29	c.19 others(40): Show c.1992_*1993insAAAAATATATATATATATATATATATATA	TRAPPC3L	ENSG00000173626.10	transcript	ENST00000368602.4	protein_coding		27		chr6	TogoVar
TRAPPC3L_chr6_116489989_116550684	116494961	A A	ATATATAT others(22): Show ATATATATATATATATATATATATTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02083.hp1 HG02083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0261 a0001c0001t0001g0261	1	360	0.0028	29	c.19 others(40): Show c.1992_*1993insAAAAAAATATATATATATATATATATATA	TRAPPC3L	ENSG00000173626.10	transcript	ENST00000368602.4	protein_coding		27		chr6	TogoVar
TRAPPC3L_chr6_116489989_116550684	116494961	A A	ATATATAT others(22): Show ATATATATATATATATATATATTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19043.hp1 NA21309.hp1 NA19043.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0001 a0001c0001t0010	a0001c0001t0001g0279 a0001c0001t0010g0255 a0001c0001t0001g0279 a0001c0001t0010g0255	2	360	0.0056	29	c.19 others(40): Show c.1992_*1993insAAAAAAAAATATATATATATATATATATA	TRAPPC3L	ENSG00000173626.10	transcript	ENST00000368602.4	protein_coding		27		chr6	TogoVar
TRAPPC8_chr18_31824197_31948128	31935548	T T	TGAAAAAA others(22): Show TGAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0323 a0001c0001t0003g0323	1	350	0.0029	29	c.158 others(46): Show c.158-4026_158-4025insTTTTTTTTTTTTTTTTTTTTTTTTTTTT C	TRAPPC8	ENSG00000153339.15	transcript	ENST00000283351.10	protein_coding	1/28			chr18	TogoVar
TRAPPC9_chr8_139722725_140462744	140018324	A A	ATTTTTTC others(22): Show ATTTTTTCTTTTTTTTTTTTTTTTTTTCTT	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0022 a0001c0002t0007g0022	1	98	0.0102	29	c.269 others(48): Show c.2699+5612_2699+5613insAAGAAAAAAAAAAAAAAAAAAAGAAA AAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	18/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140018324	A A	ATTTTTTC others(22): Show ATTTTTTCTTTTTTTTTTTTTTTTTTTTCT	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0010 a0001c0004t0010	a0001c0004t0010g0089 a0001c0004t0010g0089	1	98	0.0102	29	c.269 others(48): Show c.2699+5612_2699+5613insAGAAAAAAAAAAAAAAAAAAAAGAAA AAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	18/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140137370	T T	TCTCATCA others(22): Show TCTCATCATAGAGATGACTGTCCAAGATCA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0001 a0001c0012t0001	a0001c0012t0001g0092 a0001c0012t0001g0092	1	98	0.0102	29	c.255 others(50): Show c.2556+84060_2556+84088dupTGATCTTGGACAGTCATCTCTATG ATGAG	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140393032	T T	TTTTTTTT others(22): Show TTTTTTTTTATTTTATTTTATTTTATTTTA	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0006 a0001c0002t0003g0006	1	98	0.0102	29	c.113 others(48): Show c.1134+4587_1134+4588insTAAAATAAAATAAAATAAAATAAAAA AAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	7/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140393032	T T	TTTTTTTT others(22): Show TTTTTTTTTATTTTATTTTTTTTTATTTTA	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0022 a0001c0002t0022	a0001c0002t0022g0009 a0001c0002t0022g0009	1	98	0.0102	29	c.113 others(48): Show c.1134+4587_1134+4588insTAAAATAAAAAAAAATAAAATAAAAA AAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	7/22			chr8	TogoVar
TRARG1_chr17_1274662_1305978	1275531	G G	GGGTGAGT others(22): Show GGGTGAGTGTGTGTGGGTGAGTGTGTGAGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02258.hp2 HG02922.hp1 others(7): Show HG02145.hp2 HG02258.hp2 HG02922.hp1 HG02970.hp1 HG02970.hp2 HG03195.hp1 HG03195.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 others(3): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0016 a0001c0001t0028 a0003c0003t0025	a0001c0001t0004g0062 a0001c0001t0005g0204 a0001c0001t0008g0282 others(7): Show a0001c0001t0004g0062 a0001c0001t0005g0204 a0001c0001t0008g0282 a0001c0001t0008g0295 a0001c0001t0016g0103 a0001c0001t0016g0292 a0001c0001t0016g0293 a0001c0001t0028g0294 a0001c0001t0028g0307 a0003c0003t0025g0107	10	402	0.0249	29	c.-44 others(40): Show c.-4471_-4470insGGTGAGTGTGTGTGGGTGAGTGTGTGAGT	TRARG1	ENSG00000184811.4	transcript	ENST00000333813.4	protein_coding		4130		chr17	TogoVar
TRDN_chr6_123211339_123641950	123266643	A A	ATATAATA others(22): Show ATATAATATATATATTATAATATGTATTAT	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0008 a0002c0004t0008	a0002c0004t0008g0150 a0002c0004t0008g0150	1	152	0.0066	29	c.178 others(48): Show c.1783+1063_1783+1064insATAATACATATTATAATATATATATT ATA	TRDN	ENSG00000186439.15	transcript	ENST00000334268.9	protein_coding	32/40			chr6	TogoVar
TRDN_chr6_123211339_123641950	123499719	A A	AAAAAAAA others(22): Show AAAAAAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18999.hp1 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0124 a0001c0001t0001g0124	1	152	0.0066	29	c.794 others(46): Show c.794-2468_794-2467insATATATATATATATATATATTTTTTTTT T	TRDN	ENSG00000186439.15	transcript	ENST00000334268.9	protein_coding	8/40			chr6	TogoVar
TREM2_chr6_41153508_41168116	41155375	T T	TCTCTCTC others(22): Show TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0008 a0008	a0008c0009 a0008c0009	a0008c0009t0001 a0008c0009t0001	a0008c0009t0001g0043 a0008c0009t0001g0043	1	324	0.0031	29	c.33 others(40): Show c.3388_*3389insGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	TREM2	ENSG00000095970.17	transcript	ENST00000373113.8	protein_coding		3132		chr6	TogoVar
TREML1_chr6_41144337_41159347	41155375	T T	TCTCTCTC others(22): Show TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0022 a0001c0001t0001g0022	1	292	0.0034	29	c.-10 others(40): Show c.-1088_-1087insGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	TREML1	ENSG00000161911.12	transcript	ENST00000426005.7	protein_coding		1029		chr6	TogoVar
TRERF1_chr6_42219931_42456926	42277905	G G	GAGGAAGA others(22): Show GAGGAAGAGGAAGAGGAAGAGGAAGAGGAA	intron_variant intron_variant	MODIFIER	NA19083.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	180	0.0056	29	c.-25 others(48): Show c.-258-8058_-258-8057insTTCCTCTTCCTCTTCCTCTTCCTCTT CCT	TRERF1	ENSG00000124496.13	transcript	ENST00000695948.1	protein_coding	4/17			chr6	TogoVar
TRIM15_chr6_30158546_30177693	30167427	G G	GAACATGA others(22): Show GAACATGACACAAAGCAGTGTTCTGATTCC	intron_variant intron_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0013 a0013	a0013c0019 a0013c0019	a0013c0019t0007 a0013c0019t0007	a0013c0019t0007g0035 a0013c0019t0007g0035	1	461	0.0022	29	c.477 others(44): Show c.477+157_477+158insACATGACACAAAGCAGTGTTCTGATTCCA	TRIM15	ENSG00000204610.14	transcript	ENST00000376694.9	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr6	TogoVar
TRIM22_chr11_5684790_5715863	5699530	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18939.hp2 NA18939.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0307 a0004c0004t0001g0307	1	480	0.0021	29	c.750 others(45): Show c.750+996_750+1024dupAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	TRIM22	ENSG00000132274.17	transcript	ENST00000379965.8	protein_coding	4/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
TRIM24_chr7_138455259_138594996	138508700	C C	CGGCGAGC others(22): Show CGGCGAGCGCGCGCGCGTGTGTGCGTGTGT	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01256.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	312	0.0032	29	c.483 others(46): Show c.483+4293_483+4294insGCGAGCGCGCGCGCGTGTGTGCGTGTGT G	TRIM24	ENSG00000122779.18	transcript	ENST00000343526.9	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr7	TogoVar
TRIM2_chr4_153199443_153344317	153273270	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0078 a0001c0001t0010g0078	1	268	0.0037	29	c.216 others(46): Show c.216-2600_216-2599insTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	TRIM2	ENSG00000109654.16	transcript	ENST00000338700.10	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
TRIM37_chr17_58993202_59111880	59042447	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG03831.hp1 NA18979.hp2 others(1): Show HG01978.hp2 HG03831.hp1 NA18979.hp2 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0003 a0001c0008t0003 a0001c0001t0003 a0001c0008t0003	a0001c0001t0003g0003 a0001c0001t0003g0004 a0001c0001t0003g0053 others(1): Show a0001c0001t0003g0003 a0001c0001t0003g0004 a0001c0001t0003g0053 a0001c0008t0003g0039	4	342	0.0117	29	c.166 others(46): Show c.1668-550_1668-549insATATATATATATATATATATATATATAT A	TRIM37	ENSG00000108395.14	transcript	ENST00000262294.12	protein_coding	16/23			chr17	TogoVar
TRIM37_chr17_58993202_59111880	59042449	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0071 a0001c0001t0003g0071	1	342	0.0029	29	c.166 others(46): Show c.1668-552_1668-551insATATATATATATATATATATATATATAT A	TRIM37	ENSG00000108395.14	transcript	ENST00000262294.12	protein_coding	16/23			chr17	TogoVar
TRIM67_chr1_231157058_231226565	231167319	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0338 a0001c0001t0017g0338	1	354	0.0028	29	c.104 others(48): Show c.1044+3327_1044+3328insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	TRIM67	ENSG00000119283.16	transcript	ENST00000366653.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
TRIO_chr5_14138342_14515204	14421227	A A	ATTTATTT others(22): Show ATTTATTTATTTTATTTTATTTTATTTTAT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0109 a0001c0001t0002g0109	1	198	0.0051	29	c.520 others(48): Show c.5203+1213_5203+1214insATTTTATTTTATTTTATTTTATTTTA TTT	TRIO	ENSG00000038382.23	transcript	ENST00000344204.9	protein_coding	34/56		INFO_REALIGN_3_PRIME	chr5	TogoVar
TRIP11_chr14_91960991_92045059	91967135	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01255.hp2 HG01255.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0038 a0001c0004t0038	a0001c0004t0038g0211 a0001c0004t0038g0211	1	364	0.0028	29	c.25 others(40): Show c.2537_*2538insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	TRIP11	ENSG00000100815.12	transcript	ENST00000267622.8	protein_coding	21/21	2537		chr14	TogoVar
TRIP4_chr15_64382836_64460303	64431847	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0029 a0001c0007t0001g0029	1	220	0.0046	29	c.157 others(48): Show c.1575+6217_1575+6218insATATATATATATATATATATATATTT TTT	TRIP4	ENSG00000103671.10	transcript	ENST00000261884.8	protein_coding	11/12		INFO_REALIGN_3_PRIME	chr15	TogoVar
TRMT10B_chr9_37748805_37783972	37767513	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02080.hp2 HG02572.hp1 others(8): Show HG02040.hp1 HG02080.hp2 HG02572.hp1 HG02572.hp2 HG02723.hp2 HG02895.hp1 HG03490.hp2 HG03492.hp1 NA18747.hp2 NA19005.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0021 a0001c0001t0001 a0001c0001t0006 a0001c0001t0021	a0001c0001t0001g0121 a0001c0001t0001g0264 a0001c0001t0001g0265 others(8): Show a0001c0001t0001g0121 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0293 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0001t0001g0311 a0001c0001t0006g0294 a0001c0001t0021g0292	11	388	0.0284	29	c.421 others(44): Show c.421-541_421-540insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	TRMT10B	ENSG00000165275.10	transcript	ENST00000297994.4	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
TRMT9B_chr8_12940673_13034777	13006331	G G	GCCAGGCA others(22): Show GCCAGGCAGCCTCATCGCTGACATAGGTAA	intron_variant intron_variant	MODIFIER	NA18972.hp1 NA19055.hp2 NA18972.hp1 NA19055.hp2	a0009 a0009	a0009c0017 a0009c0017	a0009c0017t0019 a0009c0017t0162 a0009c0017t0019 a0009c0017t0162	a0009c0017t0019g0085 a0009c0017t0162g0343 a0009c0017t0019g0085 a0009c0017t0162g0343	2	384	0.0052	29	c.154 others(43): Show c.154+77_154+105dupCGCTGACATAGGTAACCAGGCAGCCTCAT	TRMT9B	ENSG00000250305.9	transcript	ENST00000524591.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
TRPA1_chr8_72016250_72080584	72052997	G G	GTGTGTGT others(22): Show GTGTGTGTGTGTGTGTGTGATAGATAGAGA	intron_variant intron_variant	MODIFIER	NA18941.hp1 NA18941.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0060 a0001c0001t0001g0060	1	402	0.0025	29	c.164 others(46): Show c.1645-233_1645-232insTCTCTATCTATCACACACACACACACAC A	TRPA1	ENSG00000104321.11	transcript	ENST00000262209.5	protein_coding	13/26			chr8	TogoVar
TRPC4_chr13_37627063_37874772	37698167	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02622.hp2 HG02257.hp1 HG02622.hp2	a0001 a0001	a0001c0003 a0001c0011 a0001c0003 a0001c0011	a0001c0003t0027 a0001c0011t0002 a0001c0003t0027 a0001c0011t0002	a0001c0003t0027g0269 a0001c0011t0002g0087 a0001c0003t0027g0269 a0001c0011t0002g0087	2	286	0.0070	29	c.898 others(46): Show c.898-5833_898-5832insAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	TRPC4	ENSG00000133107.15	transcript	ENST00000379705.8	protein_coding	3/10			chr13	TogoVar
TRPC4_chr13_37627063_37874772	37812176	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG02717.hp2 NA18981.hp2 HG01106.hp1 HG02717.hp2 NA18981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0035 a0001c0001t0039 a0001c0001t0003 a0001c0001t0035 a0001c0001t0039	a0001c0001t0003g0045 a0001c0001t0035g0236 a0001c0001t0039g0128 a0001c0001t0003g0045 a0001c0001t0035g0236 a0001c0001t0039g0128	3	286	0.0105	29	c.-27 others(48): Show c.-27-28817_-27-28816insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	TRPC4	ENSG00000133107.15	transcript	ENST00000379705.8	protein_coding	1/10			chr13	TogoVar
TRPC5_chrX_111763011_112087776	111842132	G G	GTATATAT others(22): Show GTATATATATATATTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03471.hp1 HG03486.hp1 HG02965.hp1 HG03471.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0025 a0001c0001t0014 a0001c0001t0025	a0001c0001t0014g0156 a0001c0001t0014g0157 a0001c0001t0025g0022 a0001c0001t0014g0156 a0001c0001t0014g0157 a0001c0001t0025g0022	3	161	0.0186	29	c.170 others(48): Show c.1700+4981_1700+4982insTATATATATATATATAATATATATAT ATA	TRPC5	ENSG00000072315.4	transcript	ENST00000262839.3	protein_coding	6/10			chrX	TogoVar
TRPM2_chr21_44348621_44447644	44395669	G G	GAGGGGTG others(22): Show GAGGGGTGTGGAGGGGTGTGGAAGCTGTGA	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01884.hp1 HG02273.hp2 others(6): Show HG01081.hp2 HG01884.hp1 HG02273.hp2 HG03942.hp1 HG04199.hp1 HG04199.hp2 NA18966.hp2 NA19012.hp2 NA20805.hp1	a0001 a0004 a0006 others(1): Show a0001 a0004 a0006 a0007	a0001c0001 a0001c0003 a0004c0005 others(2): Show a0001c0001 a0001c0003 a0004c0005 a0006c0011 a0007c0013	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0003t0001 a0004c0005t0003 a0006c0011t0001 a0007c0013t0003	a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0002g0018 others(6): Show a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0002g0018 a0001c0001t0002g0039 a0001c0001t0006g0031 a0001c0003t0001g0041 a0004c0005t0003g0013 a0006c0011t0001g0010 a0007c0013t0003g0004	9	44	0.2046	29	c.193 others(46): Show c.1932+139_1932+140insAGCTGTGAAGGGGTGTGGAGGGGTGTGG A	TRPM2	ENSG00000142185.18	transcript	ENST00000397928.6	protein_coding	12/31		INFO_REALIGN_3_PRIME	chr21	TogoVar
TRPM2_chr21_44348621_44447644	44396016	C C	CTGGAGGG others(22): Show CTGGAGGGGTGTGGAGGCTGTGGAGGGGTG	intron_variant intron_variant	MODIFIER	HG02698.hp2 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0016 a0001c0001t0009g0016	1	44	0.0227	29	c.193 others(46): Show c.1932+481_1932+482insCTGTGGAGGGGTGTGGAGGGGTGTGGAG G	TRPM2	ENSG00000142185.18	transcript	ENST00000397928.6	protein_coding	12/31		INFO_REALIGN_3_PRIME	chr21	TogoVar
TRPM2_chr21_44348621_44447644	44396226	G G	GTGTAGAG others(22): Show GTGTAGAGGGGTGTAGAGGGTTGTGGAGGC	intron_variant intron_variant	MODIFIER	HG03942.hp1 HG04199.hp1 HG04199.hp2 others(1): Show HG03942.hp1 HG04199.hp1 HG04199.hp2 NA18945.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0016 a0006c0011 a0001c0001 a0001c0016 a0006c0011	a0001c0001t0001 a0001c0001t0006 a0001c0016t0002 others(1): Show a0001c0001t0001 a0001c0001t0006 a0001c0016t0002 a0006c0011t0001	a0001c0001t0001g0020 a0001c0001t0006g0031 a0001c0016t0002g0005 others(1): Show a0001c0001t0001g0020 a0001c0001t0006g0031 a0001c0016t0002g0005 a0006c0011t0001g0010	4	44	0.0909	29	c.193 others(46): Show c.1932+678_1932+679insAGAGGGGTGTAGAGGGTTGTGGAGGCTG T	TRPM2	ENSG00000142185.18	transcript	ENST00000397928.6	protein_coding	12/31		INFO_REALIGN_3_PRIME	chr21	TogoVar

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