Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
VAV3_chr1_107566161_107970180	107952468	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0098 a0001c0001t0007g0098	1	210	0.0048	29	c.204 others(48): Show c.204+12197_204+12198insTATATATATATATATATATATATATA TAT	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	1/26			chr1	TogoVar
VCX2_chrX_8164944_8176267	8169117	T T	TCTCCCCA others(22): Show TCTCCCCACACACCTCCTCTTCCTCCCTCC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19005.hp1 NA19005.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0002 a0003c0003t0001g0002	1	115	0.0087	29	c.91 others(38): Show c.914_*915insGGAGGGAGGAAGAGGAGGTGTGTGGGGAG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding		826		chrX	TogoVar
VCX2_chrX_8164944_8176267	8169207	C C	CCCTCCCT others(22): Show CCCTCCCTCCCTCCCCACACACCACCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01099.hp1 HG02293.hp2 HG02886.hp2 HG01099.hp1 HG02293.hp2 HG02886.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0003 a0004c0004t0003	a0004c0004t0003g0009 a0004c0004t0003g0058 a0004c0004t0003g0060 a0004c0004t0003g0009 a0004c0004t0003g0058 a0004c0004t0003g0060	3	115	0.0261	29	c.82 others(38): Show c.824_*825insAAGAGGTGGTGTGTGGGGAGGGAGGGAGG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding		736		chrX	TogoVar
VCX2_chrX_8164944_8176267	8169296	A A	ACCTCTTC others(22): Show ACCTCTTCCTCCCTCCCTCCCCACACACCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0001 a0006c0005t0001	a0006c0005t0001g0006 a0006c0005t0001g0006	1	115	0.0087	29	c.73 others(38): Show c.735_*736insAGGTGTGTGGGGAGGGAGGGAGGAAGAGG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding		647		chrX	TogoVar
VCX2_chrX_8164944_8176267	8169628	C C	CCCTCCCT others(22): Show CCCTCCCTCCCTCCCCACACACCACCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp1 HG00621.hp1	a0018 a0018	a0018c0017 a0018c0017	a0018c0017t0002 a0018c0017t0002	a0018c0017t0002g0042 a0018c0017t0002g0042	1	115	0.0087	29	c.40 others(38): Show c.403_*404insAAGAGGTGGTGTGTGGGGAGGGAGGGAGG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding		315		chrX	TogoVar
VCX2_chrX_8164944_8176267	8169722	T T	TCCCTCCC others(22): Show TCCCTCCCTCCCCACACACCACCTCTTCCC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18995.hp1 NA18995.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0001 a0001c0002t0001g0001	1	115	0.0087	29	c.30 others(38): Show c.309_*310insGGGAAGAGGTGGTGTGTGGGGAGGGAGGG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding		221		chrX	TogoVar
VCX2_chrX_8164944_8176267	8169723	C C	CCCTCCCT others(22): Show CCCTCCCTCCCTCCCCACACACCTCCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02300.hp1 HG02300.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0001 a0005c0006t0001	a0005c0006t0001g0018 a0005c0006t0001g0018	1	115	0.0087	29	c.30 others(38): Show c.308_*309insAAGAGGAGGTGTGTGGGGAGGGAGGGAGG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding		220		chrX	TogoVar
VCX2_chrX_8164944_8176267	8169895	C C	CCCCTCCC others(22): Show CCCCTCCCTCCCCACACACCACCTCTTCCT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18986.hp1 NA18986.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0004 a0002c0001t0001g0004	1	115	0.0087	29	c.13 others(38): Show c.136_*137insAGGAAGAGGTGGTGTGTGGGGAGGGAGGG	VCX2	ENSG00000177504.10	transcript	ENST00000317103.5	protein_coding		48		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6532792	C C	CCCTCCCT others(22): Show CCCTCCCTCCCTCCCCACACACCACCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0004 a0003c0004t0001g0004	1	74	0.0135	29	c.95 others(38): Show c.952_*953insAAGAGGTGGTGTGTGGGGAGGGAGGGAGG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		825		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6532851	C C	CCCTCCCT others(22): Show CCCTCCCTCCCTCCCCACACACCACCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp1 HG03516.hp2 HG03139.hp1 HG03516.hp2	a0007 a0028 a0007 a0028	a0007c0008 a0028c0029 a0007c0008 a0028c0029	a0007c0008t0001 a0028c0029t0001 a0007c0008t0001 a0028c0029t0001	a0007c0008t0001g0007 a0028c0029t0001g0017 a0007c0008t0001g0007 a0028c0029t0001g0017	2	74	0.0270	29	c.89 others(38): Show c.893_*894insAAGAGGTGGTGTGTGGGGAGGGAGGGAGG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		766		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6532869	A A	ACACTTCT others(22): Show ACACTTCTTCCTCCCTCCCTCCCCACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0004 a0003c0004t0001g0004	1	74	0.0135	29	c.87 others(38): Show c.875_*876insGTGTGTGGGGAGGGAGGGAGGAAGAAGTG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		748		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6532904	A A	ACCTCTTC others(22): Show ACCTCTTCCTCCCTCCCTCCCCACACACCT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0002 a0004c0005t0002	a0004c0005t0002g0049 a0004c0005t0002g0049	1	74	0.0135	29	c.84 others(38): Show c.840_*841insAGGTGTGTGGGGAGGGAGGGAGGAAGAGG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		713		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6533095	C C	CCCTCCCT others(22): Show CCCTCCCTCCCTCCCCACACACCACCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	74	0.0135	29	c.64 others(38): Show c.649_*650insAAGAGGTGGTGTGTGGGGAGGGAGGGAGG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		522		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6533146	A A	ACACCTCT others(22): Show ACACCTCTTCCTCCCTCCCTCCCCACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0027 a0027	a0027c0030 a0027c0030	a0027c0030t0001 a0027c0030t0001	a0027c0030t0001g0020 a0027c0030t0001g0020	1	74	0.0135	29	c.59 others(38): Show c.598_*599insGTGTGTGGGGAGGGAGGGAGGAAGAGGTG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		471		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6533146	A A	ACACCTCT others(22): Show ACACCTCTTCCTCCCTCCCTCCTCACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19056.hp1 NA19056.hp1	a0025 a0025	a0025c0019 a0025c0019	a0025c0019t0002 a0025c0019t0002	a0025c0019t0002g0040 a0025c0019t0002g0040	1	74	0.0135	29	c.59 others(38): Show c.598_*599insGTGTGTGAGGAGGGAGGGAGGAAGAGGTG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		471		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6533158	C C	CCCTCCCT others(22): Show CCCTCCCTCCCTCCCCACACACCACCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0015 a0006c0007t0015	a0006c0007t0015g0045 a0006c0007t0015g0045	1	74	0.0135	29	c.58 others(38): Show c.586_*587insAAGAGGTGGTGTGTGGGGAGGGAGGGAGG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		459		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6533254	C C	CCCTCCCT others(22): Show CCCTCCCTCCCTCCCCACACACCACCTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0010 a0010	a0010c0014 a0010c0014	a0010c0014t0005 a0010c0014t0005	a0010c0014t0005g0038 a0010c0014t0005g0038	1	74	0.0135	29	c.49 others(38): Show c.490_*491insAAGAGGTGGTGTGTGGGGAGGGAGGGAGG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		363		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6533272	A A	ACACCTCT others(22): Show ACACCTCTTCCTCCCTCCCTCCCCACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03516.hp2 NA19240.hp2 HG03516.hp2 NA19240.hp2	a0001 a0028 a0001 a0028	a0001c0001 a0028c0029 a0001c0001 a0028c0029	a0001c0001t0001 a0028c0029t0001 a0001c0001t0001 a0028c0029t0001	a0001c0001t0001g0014 a0028c0029t0001g0017 a0001c0001t0001g0014 a0028c0029t0001g0017	2	74	0.0270	29	c.47 others(38): Show c.472_*473insGTGTGTGGGGAGGGAGGGAGGAAGAGGTG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		345		chrX	TogoVar
VCX3A_chrX_6528618_6540118	6533482	T T	TCCCCACA others(22): Show TCCCCACACACCACCTCTTCCTCCCTCCCC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02886.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1 HG02886.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0004 a0021 a0004 a0021	a0004c0005 a0021c0024 a0004c0005 a0021c0024	a0004c0005t0002 a0021c0024t0006 a0004c0005t0002 a0021c0024t0006	a0004c0005t0002g0013 a0004c0005t0002g0049 a0021c0024t0006g0048 a0004c0005t0002g0013 a0004c0005t0002g0049 a0021c0024t0006g0048	3	74	0.0405	29	c.26 others(38): Show c.262_*263insGGGGAGGGAGGAAGAGGTGGTGTGTGGGG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		135		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8466638	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0014 a0014	a0014c0020 a0014c0020	a0014c0020t0016 a0014c0020t0016	a0014c0020t0016g0001 a0014c0020t0016g0001	1	271	0.0037	29	c.25 others(38): Show c.255_*256insGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		129		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8466846	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0003 a0002c0002t0002g0003	1	271	0.0037	29	c.46 others(38): Show c.463_*464insGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		337		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8466939	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGGGGAAGAGGAGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	271	0.0037	29	c.55 others(38): Show c.556_*557insGGGAGGGAGGGGGGAAGAGGAGGTGTGTG	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		430		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8466993	T T	TGGTGTGT others(22): Show TGGTGTGTGGGGAGGGAGGGAGGAAGAGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19066.hp1 NA19066.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0006 a0002c0002t0002g0006	1	271	0.0037	29	c.61 others(38): Show c.610_*611insGGTGTGTGGGGAGGGAGGGAGGAAGAGGA	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		484		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467005	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01515.hp1 HG01517.hp2 HG01515.hp1 HG01517.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0003 a0002c0002t0002g0043 a0002c0002t0002g0003 a0002c0002t0002g0043	2	271	0.0074	29	c.62 others(38): Show c.622_*623insGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		496		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467180	T T	TGTGGGGA others(22): Show TGTGGGGAGGGAGGGAGGGAGGAAGAGGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01175.hp2 NA18951.hp1 NA19091.hp1 HG01175.hp2 NA18951.hp1 NA19091.hp1	a0000 a0002 a0012 a0000 a0002 a0012	a0000c0038 a0002c0002 a0012c0012 a0000c0038 a0002c0002 a0012c0012	a0000c0038t0002 a0002c0002t0002 a0012c0012t0003 a0000c0038t0002 a0002c0002t0002 a0012c0012t0003	a0000c0038t0002g0006 a0002c0002t0002g0006 a0012c0012t0003g0010 a0000c0038t0002g0006 a0002c0002t0002g0006 a0012c0012t0003g0010	3	271	0.0111	29	c.79 others(38): Show c.797_*798insGTGGGGAGGGAGGGAGGGAGGAAGAGGTG	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		671		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467242	G G	GGGAGGGA others(22): Show GGGAGGGAGGGAAGAGGAGGTGTGTGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0006 a0002c0002t0002g0006	1	271	0.0037	29	c.85 others(38): Show c.859_*860insGGAGGGAGGGAAGAGGAGGTGTGTGGGGA	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		733		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467295	T T	TGTGTGGG others(22): Show TGTGTGGGGTGGGAGGGAGGAGGTGGTGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02129.hp1 HG02129.hp1	a0031 a0031	a0031c0101 a0031c0101	a0031c0101t0003 a0031c0101t0003	a0031c0101t0003g0040 a0031c0101t0003g0040	1	271	0.0037	29	c.91 others(38): Show c.912_*913insGTGTGGGGTGGGAGGGAGGAGGTGGTGGG	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		786		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467304	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19005.hp1 NA19005.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	271	0.0037	29	c.92 others(38): Show c.921_*922insGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		795		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467320	G G	GGGAAGAG others(22): Show GGGAAGAGGAGGTGTGTGGGGAGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0063 a0063	a0063c0094 a0063c0094	a0063c0094t0001 a0063c0094t0001	a0063c0094t0001g0007 a0063c0094t0001g0007	1	271	0.0037	29	c.93 others(38): Show c.937_*938insGGAAGAGGAGGTGTGTGGGGAGGGAGGGA	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		811		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467358	T T	TGGTGTGT others(22): Show TGGTGTGTGAGTAGGGAGGGAGGAAGAGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0003 a0005c0005t0003	a0005c0005t0003g0053 a0005c0005t0003g0053	1	271	0.0037	29	c.97 others(38): Show c.975_*976insGGTGTGTGAGTAGGGAGGGAGGAAGAGGA	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		849		chrX	TogoVar
VCX_chrX_7838171_7849143	7842285	T T	TGAGATGG others(22): Show TGAGATGGAAAAGTTCTTTGATTGCATCCA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0003 a0002c0006t0003	a0002c0006t0003g0002 a0002c0006t0003g0002	1	341	0.0029	29	c.-91 others(38): Show c.-919_-918insGAGATGGAAAAGTTCTTTGATTGCATCCA	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		885		chrX	TogoVar
VCX_chrX_7838171_7849143	7844176	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGGGGAAGAGGTGGTGTGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0003 a0002c0006t0003	a0002c0006t0003g0002 a0002c0006t0003g0002	1	341	0.0029	29	c.16 others(38): Show c.160_*161insGGGAGGGAGGGGGGAAGAGGTGGTGTGAG	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		34		chrX	TogoVar
VCX_chrX_7838171_7849143	7844176	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGGGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18939.hp1 NA18939.hp1	a0010 a0010	a0010c0012 a0010c0012	a0010c0012t0003 a0010c0012t0003	a0010c0012t0003g0002 a0010c0012t0003g0002	1	341	0.0029	29	c.16 others(38): Show c.160_*161insGGGAGGGAGGGGGGAAGAGGTGGTGTGTG	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		34		chrX	TogoVar
VCX_chrX_7838171_7849143	7844337	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18980.hp1 NA19085.hp1 NA18980.hp1 NA19085.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0001 a0003c0003t0002g0001	2	341	0.0059	29	c.32 others(38): Show c.321_*322insGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		195		chrX	TogoVar
VCX_chrX_7838171_7849143	7844370	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGAGGAAGAGGAGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01081.hp2 HG01099.hp1 HG01433.hp1 others(8): Show HG01081.hp2 HG01099.hp1 HG01433.hp1 HG02622.hp2 NA18965.hp1 NA18983.hp1 NA18991.hp2 NA18998.hp1 NA19004.hp1 NA19080.hp2 NA20805.hp1	a0005 a0009 a0011 others(1): Show a0005 a0009 a0011 a0070	a0005c0005 a0009c0011 a0011c0013 others(1): Show a0005c0005 a0009c0011 a0011c0013 a0070c0066	a0005c0005t0005 a0005c0005t0007 a0009c0011t0005 others(2): Show a0005c0005t0005 a0005c0005t0007 a0009c0011t0005 a0011c0013t0004 a0070c0066t0005	a0005c0005t0005g0003 a0005c0005t0007g0003 a0009c0011t0005g0002 others(2): Show a0005c0005t0005g0003 a0005c0005t0007g0003 a0009c0011t0005g0002 a0011c0013t0004g0005 a0070c0066t0005g0003	11	341	0.0323	29	c.35 others(38): Show c.354_*355insGGGAGGGAGGGAGGAAGAGGAGGTGTGTG	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		228		chrX	TogoVar
VCX_chrX_7838171_7849143	7844370	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp1 HG02280.hp1 NA19240.hp2 HG00733.hp1 HG02280.hp1 NA19240.hp2	a0002 a0032 a0002 a0032	a0002c0002 a0032c0029 a0002c0002 a0032c0029	a0002c0002t0002 a0032c0029t0006 a0002c0002t0002 a0032c0029t0006	a0002c0002t0002g0001 a0032c0029t0006g0004 a0002c0002t0002g0001 a0032c0029t0006g0004	3	341	0.0088	29	c.35 others(38): Show c.354_*355insGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		228		chrX	TogoVar
VCX_chrX_7838171_7849143	7844463	A A	AGGGAGGG others(22): Show AGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18979.hp2 NA19082.hp1 NA18979.hp2 NA19082.hp1	a0019 a0019	a0019c0017 a0019c0017	a0019c0017t0002 a0019c0017t0002	a0019c0017t0002g0001 a0019c0017t0002g0001	2	341	0.0059	29	c.44 others(38): Show c.447_*448insGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		321		chrX	TogoVar
VCY_chrY_13980772_13991473	13985230	G G	GACACACC others(22): Show GACACACCTCTTCTTCCTCCCTCCCTCCCC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	123	0.0081	29	c.64 others(38): Show c.640_*641insGGGGAGGGAGGGAGGAAGAAGAGGTGTGT	VCY	ENSG00000129864.7	transcript	ENST00000250825.5	protein_coding		541		chrY	TogoVar
VEPH1_chr3_157254742_157508416	157304019	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG04228.hp2 HG00558.hp1 HG04228.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0002 a0001c0001 a0003c0002	a0001c0001t0006 a0003c0002t0001 a0001c0001t0006 a0003c0002t0001	a0001c0001t0006g0193 a0003c0002t0001g0214 a0001c0001t0006g0193 a0003c0002t0001g0214	2	304	0.0066	29	c.201 others(48): Show c.2010+9601_2010+9602insTATATATATATATATATATATATATA TAT	VEPH1	ENSG00000197415.12	transcript	ENST00000362010.7	protein_coding	11/13			chr3	TogoVar
VEPH1_chr3_157254742_157508416	157481465	C C	CACACACA others(22): Show CACACACAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0084 a0001c0001t0002g0084	1	304	0.0033	29	c.139 others(48): Show c.139-10937_139-10936insTTTTTTTTTTTTTTTTTTTTTTTGTG TGT	VEPH1	ENSG00000197415.12	transcript	ENST00000362010.7	protein_coding	2/13			chr3	TogoVar
VGLL3_chr3_86932973_86996149	86962884	C C	CAAAATAG others(22): Show CAAAATAGGGAAGCCAGCCTTCACTATTCA	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0040 a0001c0001t0040	a0001c0001t0040g0181 a0001c0001t0040g0181	1	370	0.0027	29	c.937 others(46): Show c.937+5677_937+5705dupTGAATAGTGAAGGCTGGCTTCCCTATTT T	VGLL3	ENSG00000206538.9	transcript	ENST00000398399.7	protein_coding	3/3			chr3	TogoVar
VGLL3_chr3_86932973_86996149	86989706	G G	GTCTGAGG others(22): Show GTCTGAGGTGGACTCTATTTTGGTACAGCC	intron_variant intron_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0302 a0001c0001t0001g0302	1	370	0.0027	29	c.126 others(44): Show c.126+883_126+911dupGGCTGTACCAAAATAGAGTCCACCTCAGA	VGLL3	ENSG00000206538.9	transcript	ENST00000398399.7	protein_coding	1/3			chr3	TogoVar
VGLL3_chr3_86932973_86996149	86995540	A A	AATATATA others(22): Show AATATATATAATATATATTATATATATAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0223 a0001c0001t0002g0223	1	370	0.0027	29	c.-47 others(40): Show c.-4798_-4797insATTATATATATAATATATATTATATATAT	VGLL3	ENSG00000206538.9	transcript	ENST00000398399.7	protein_coding		4392		chr3	TogoVar
VIPR1_chr3_42497643_42542568	42522101	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0003 a0001c0014t0003	a0001c0014t0003g0268 a0001c0014t0003g0268	1	412	0.0024	29	c.292 others(46): Show c.292+2772_292+2773insATATATATATATATATATATATATATAT T	VIPR1	ENSG00000114812.13	transcript	ENST00000325123.5	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr3	TogoVar
VIRMA_chr8_94482689_94558469	94556368	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0221 a0001c0001t0001g0221	1	346	0.0029	29	c.-29 others(40): Show c.-2922_-2921insATATATATATATATATATATATATATATA	VIRMA	ENSG00000164944.12	transcript	ENST00000297591.10	protein_coding		2900		chr8	TogoVar
VMAC_chr19_5899872_5915853	5907610	T T	TAAAAAAA others(22): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG01123.hp1 others(2): Show HG00735.hp1 HG00735.hp2 HG01123.hp1 HG01255.hp1 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0026 a0001c0001t0001 a0001c0001t0026	a0001c0001t0001g0014 a0001c0001t0026g0014 a0001c0001t0001g0014 a0001c0001t0026g0014	5	386	0.0130	29	c.192 others(46): Show c.192-1188_192-1187insAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	VMAC	ENSG00000187650.4	transcript	ENST00000339485.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr19	TogoVar
VNN1_chr6_132675849_132719055	132717176	A A	AAAAAAAA others(22): Show AAAAAAAAAGAAAGAAAGAAAGAAAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0168 a0001c0001t0001g0168	1	418	0.0024	29	c.-31 others(40): Show c.-3142_-3141insCTTTCTTTCTTTCTTTCTTTCTTTTTTTT	VNN1	ENSG00000112299.8	transcript	ENST00000367928.5	protein_coding		3122		chr6	TogoVar
VPS13B_chr8_99008274_99882580	99270131	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0021 a0021	a0021c0034 a0021c0034	a0021c0034t0001 a0021c0034t0001	a0021c0034t0001g0106 a0021c0034t0001g0106	1	134	0.0075	29	c.251 others(48): Show c.2516-4041_2516-4040insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	VPS13B	ENSG00000132549.20	transcript	ENST00000357162.7	protein_coding	17/61		INFO_REALIGN_3_PRIME	chr8	TogoVar
VPS13B_chr8_99008274_99882580	99497165	A A	ATATTTAT others(22): Show ATATTTATATATTTAATATATAAATACATG	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0116 a0001c0001t0001g0116	1	134	0.0075	29	c.387 others(48): Show c.3871-4500_3871-4472dupAATACATGTATTTATATATTTAATAT ATA	VPS13B	ENSG00000132549.20	transcript	ENST00000357162.7	protein_coding	25/61		INFO_REALIGN_3_PRIME	chr8	TogoVar
VPS13B_chr8_99008274_99882580	99832341	A A	ATTTTTTT others(22): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTT	splice_acceptor_variant others(1): Show splice_acceptor_variant intron_variant	HIGH	HG01981.hp1 HG02040.hp2 NA19065.hp1 HG01981.hp1 HG02040.hp2 NA19065.hp1	a0002 a0008 a0002 a0008	a0002c0003 a0008c0029 a0002c0003 a0008c0029	a0002c0003t0003 a0008c0029t0003 a0002c0003t0003 a0008c0029t0003	a0002c0003t0003g0078 a0002c0003t0003g0084 a0008c0029t0003g0086 a0002c0003t0003g0078 a0002c0003t0003g0084 a0008c0029t0003g0086	3	134	0.0224	29	c.933 others(42): Show c.9331-3_9331-2insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	VPS13B	ENSG00000132549.20	transcript	ENST00000357162.7	protein_coding	51/61		INFO_REALIGN_3_PRIME	chr8	TogoVar

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