Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
WDSUB1_chr2_159230798_159291703	159250088	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02717.hp1 HG02895.hp1 HG02109.hp1 HG02717.hp1 HG02895.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0117 a0003c0003t0002g0125 a0003c0003t0002g0127 a0003c0003t0002g0117 a0003c0003t0002g0125 a0003c0003t0002g0127	3	252	0.0119	29	c.113 others(48): Show c.1133-1577_1133-1576insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	WDSUB1	ENSG00000196151.11	transcript	ENST00000359774.9	protein_coding	9/10			chr2	TogoVar
WDSUB1_chr2_159230798_159291703	159280690	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0002 a0002c0007t0002	a0002c0007t0002g0080 a0002c0007t0002g0080	1	252	0.0040	29	c.399 others(44): Show c.399-746_399-745insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	WDSUB1	ENSG00000196151.11	transcript	ENST00000359774.9	protein_coding	2/10			chr2	TogoVar
WFDC1_chr16_84289878_84334844	84296422	T T	TAGCACGG others(22): Show TAGCACGGGATGCGTGTGCAGCTCTTCCCC	intron_variant intron_variant	MODIFIER	NA18991.hp1 NA18991.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0423 a0001c0001t0006g0423	1	472	0.0021	29	c.144 others(46): Show c.144+1310_144+1338dupCACGGGATGCGTGTGCAGCTCTTCCCCA G	WFDC1	ENSG00000103175.11	transcript	ENST00000219454.10	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr16	TogoVar
WFDC1_chr16_84289878_84334844	84322160	C C	CTGTGTGT others(22): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	NA18989.hp2 NA18989.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0266 a0002c0002t0002g0266	1	472	0.0021	29	c.563 others(46): Show c.563-2259_563-2258insTGTGTGTGTGTGTGTGTGTGTGTGTGTG T	WFDC1	ENSG00000103175.11	transcript	ENST00000219454.10	protein_coding	4/6			chr16	TogoVar
WIPF2_chr17_40214304_40289136	40277723	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02155.hp1 HG02280.hp1 HG02155.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0114 a0001c0001t0019 a0001c0001t0114	a0001c0001t0019g0014 a0001c0001t0114g0020 a0001c0001t0019g0014 a0001c0001t0114g0020	2	314	0.0064	29	c.128 others(46): Show c.1283-443_1283-442insTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	WIPF2	ENSG00000171475.14	transcript	ENST00000323571.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr17	TogoVar
WLS_chr1_68120360_68237523	68187189	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00621.hp2 HG00597.hp1 HG00621.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0251 a0001c0002t0002g0265 a0001c0001t0001g0251 a0001c0002t0002g0265	2	334	0.0060	29	c.379 others(46): Show c.379+6765_379+6766insTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	WLS	ENSG00000116729.14	transcript	ENST00000262348.9	protein_coding	2/11			chr1	TogoVar
WNK2_chr9_93179139_93325569	93272738	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03486.hp2 NA18906.hp2 HG03486.hp2 NA18906.hp2	a0005 a0016 a0005 a0016	a0005c0012 a0016c0037 a0005c0012 a0016c0037	a0005c0012t0001 a0016c0037t0001 a0005c0012t0001 a0016c0037t0001	a0005c0012t0001g0194 a0016c0037t0001g0195 a0005c0012t0001g0194 a0016c0037t0001g0195	2	316	0.0063	29	c.403 others(48): Show c.4033+4010_4033+4011insAAAAAAAAAAAAAAAAAAAAAAAAAA AAA	WNK2	ENSG00000165238.17	transcript	ENST00000427277.7	protein_coding	19/29		INFO_REALIGN_3_PRIME	chr9	TogoVar
WNK3_chrX_54187823_54363046	54213553	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0108 a0001c0001t0001g0108	1	156	0.0064	29	c.487 others(50): Show c.4871-11361_4871-11360insTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	WNK3	ENSG00000196632.12	transcript	ENST00000354646.7	protein_coding	22/23			chrX	TogoVar
WNT3_chr17_46757506_46823692	46822993	T T	TATAATAT others(22): Show TATAATATATAATATATAATATATGTGTTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0025 a0001c0001t0002g0025	1	281	0.0036	29	c.-43 others(40): Show c.-4397_-4396insTAACACATATATTATATATTATATATTAT	WNT3	ENSG00000108379.11	transcript	ENST00000225512.6	protein_coding		4302		chr17	TogoVar
WNT7A_chr3_13811258_13885071	13818351	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00099.hp2 HG03490.hp1 NA19085.hp2 HG00099.hp2 HG03490.hp1 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0262 a0001c0001t0263 a0001c0001t0264 a0001c0001t0262 a0001c0001t0263 a0001c0001t0264	a0001c0001t0262g0122 a0001c0001t0263g0193 a0001c0001t0264g0123 a0001c0001t0262g0122 a0001c0001t0263g0193 a0001c0001t0264g0123	3	354	0.0085	29	c.59 others(38): Show c.592_*593insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	WNT7A	ENSG00000154764.6	transcript	ENST00000285018.5	protein_coding	4/4	592		chr3	TogoVar
WRN_chr8_31028810_31181138	31174795	C C	CCTTTCCC others(22): Show CCTTTCCCTTCCTTCCTTCCTTCCTTCCTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0015 a0001c0015	a0001c0015t0047 a0001c0015t0047	a0001c0015t0047g0234 a0001c0015t0047g0234	1	264	0.0038	29	c.16 others(40): Show c.1694_*1695insTTTCCCTTCCTTCCTTCCTTCCTTCCTTC	WRN	ENSG00000165392.11	transcript	ENST00000298139.7	protein_coding	35/35	1695	INFO_REALIGN_3_PRIME	chr8	TogoVar
WSCD2_chr12_108124288_108255537	108128515	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp2 HG02622.hp2 HG01074.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0037 a0001c0001t0001 a0001c0001t0037	a0001c0001t0001g0149 a0001c0001t0037g0062 a0001c0001t0001g0149 a0001c0001t0037g0062	2	284	0.0070	29	c.-19 others(40): Show c.-1963_-1962insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	WSCD2	ENSG00000075035.10	transcript	ENST00000547525.6	protein_coding		772		chr12	TogoVar
WSCD2_chr12_108124288_108255537	108166761	T T	TTTCTTTC others(22): Show TTTCTTTCTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp2 HG02895.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0005 a0001c0001t0027g0005	2	284	0.0070	29	c.-55 others(50): Show c.-551-28519_-551-28518insCTTTCTCTTTCTTTCTTTCTTTCT TTCTT	WSCD2	ENSG00000075035.10	transcript	ENST00000547525.6	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr12	TogoVar
WSCD2_chr12_108124288_108255537	108166761	T T	TTTTTCTT others(22): Show TTTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02615.hp1 HG03098.hp2 others(1): Show HG02451.hp1 HG02615.hp1 HG03098.hp2 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0003 a0005c0006 a0001c0001 a0001c0003 a0005c0006	a0001c0001t0016 a0001c0003t0021 a0001c0003t0031 others(1): Show a0001c0001t0016 a0001c0003t0021 a0001c0003t0031 a0005c0006t0016	a0001c0001t0016g0278 a0001c0003t0021g0245 a0001c0003t0031g0050 others(1): Show a0001c0001t0016g0278 a0001c0003t0021g0245 a0001c0003t0031g0050 a0005c0006t0016g0046	4	284	0.0141	29	c.-55 others(50): Show c.-551-28518_-551-28517insTCTTTCTTTCTTTCTTTCTTTCTT TCTTT	WSCD2	ENSG00000075035.10	transcript	ENST00000547525.6	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr12	TogoVar
WSCD2_chr12_108124288_108255537	108253835	A A	AGAGAGAG others(22): Show AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0038 a0002c0002t0038	a0002c0002t0038g0074 a0002c0002t0038g0074	1	284	0.0035	29	c.54 others(40): Show c.5492_*5493insGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	WSCD2	ENSG00000075035.10	transcript	ENST00000547525.6	protein_coding		3299		chr12	TogoVar
WT1_chr11_32382775_32440539	32430432	C C	CAGAGAGA others(22): Show CAGAGAGAGAGAGAGAGGGAGGGGGGAGAG	intron_variant intron_variant	MODIFIER	NA18961.hp2 NA18961.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0009 a0001c0006t0009	a0001c0006t0009g0178 a0001c0006t0009g0178	1	328	0.0031	29	c.662 others(46): Show c.662-1814_662-1813insCTCTCCCCCCTCCCTCTCTCTCTCTCTC T	WT1	ENSG00000184937.16	transcript	ENST00000452863.10	protein_coding	1/9			chr11	TogoVar
WT1_chr11_32382775_32440539	32430455	G G	GAGAGAGA others(22): Show GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0004 a0001c0004t0004	a0001c0004t0004g0298 a0001c0004t0004g0298	1	328	0.0031	29	c.662 others(46): Show c.662-1837_662-1836insTCTCTCTCTCTCTCTCTCTCTCTCTCTC T	WT1	ENSG00000184937.16	transcript	ENST00000452863.10	protein_coding	1/9			chr11	TogoVar
WTIP_chr19_34476758_34517304	34477303	A A	AAAAAAAT others(22): Show AAAAAAATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0081 a0001c0002t0081	a0001c0002t0081g0112 a0001c0002t0081g0112	1	396	0.0025	29	c.-46 others(40): Show c.-4672_-4671insAAAAAATATATATATATATATATATATAT	WTIP	ENSG00000142279.13	transcript	ENST00000590071.7	protein_coding		4454		chr19	TogoVar
WTIP_chr19_34476758_34517304	34492689	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAAAAAAGATTCATTC	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0005 a0005	a0005c0011 a0005c0011	a0005c0011t0168 a0005c0011t0168	a0005c0011t0168g0215 a0005c0011t0168g0215	1	396	0.0025	29	c.770 others(44): Show c.770-330_770-329insAAGATTCATTCAAAAAAAAAAAAAAAAAA	WTIP	ENSG00000142279.13	transcript	ENST00000590071.7	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr19	TogoVar
WWC2_chr4_183094257_183325777	183247623	C C	CTATATAT others(22): Show CTATATATACTATATATAGTATATATACTA	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG02257.hp2 HG03139.hp2 HG01975.hp2 HG02257.hp2 HG03139.hp2	a0008 a0008	a0008c0010 a0008c0010	a0008c0010t0017 a0008c0010t0017	a0008c0010t0017g0003 a0008c0010t0017g0004 a0008c0010t0017g0005 a0008c0010t0017g0003 a0008c0010t0017g0004 a0008c0010t0017g0005	3	242	0.0124	29	c.733 others(46): Show c.733-1085_733-1084insTACTATATATAGTATATATACTATATAT A	WWC2	ENSG00000151718.16	transcript	ENST00000403733.8	protein_coding	6/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
WWOX_chr16_78094654_79217667	78385134	A A	ACACACAC others(22): Show ACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	142	0.0070	29	c.517 others(46): Show c.517-1726_517-1725insCACACACACACACACACACACACACACA C	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	5/8			chr16	TogoVar
WWOX_chr16_78094654_79217667	78527991	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0130 a0004c0006t0001g0130	1	142	0.0070	29	c.105 others(50): Show c.1056+95264_1056+95265insTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78720314	T T	TGAATTAT others(22): Show TGAATTATTTTTCTTTCTTTTCACAAGAAA	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02818.hp2 HG03453.hp2 others(4): Show HG02559.hp2 HG02818.hp2 HG03453.hp2 HG03486.hp1 HG03579.hp2 NA18522.hp2 NA19240.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0010	a0001c0001 a0003c0004 a0004c0006 others(1): Show a0001c0001 a0003c0004 a0004c0006 a0010c0025	a0001c0001t0001 a0001c0001t0004 a0003c0004t0003 others(3): Show a0001c0001t0001 a0001c0001t0004 a0003c0004t0003 a0003c0004t0004 a0004c0006t0001 a0010c0025t0001	a0001c0001t0001g0012 a0001c0001t0004g0053 a0001c0001t0004g0084 others(4): Show a0001c0001t0001g0012 a0001c0001t0004g0053 a0001c0001t0004g0084 a0003c0004t0003g0101 a0003c0004t0004g0013 a0004c0006t0001g0130 a0010c0025t0001g0007	7	142	0.0493	29	c.105 others(52): Show c.1056+287592_1056+287620dupGAATTATTTTTCTTTCTTTTCA CAAGAAA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWTR1_chr3_149512235_149663025	149622498	G G	GAAGAAAG others(22): Show GAAGAAAGAAAGAAAGAAAGAAAAGAAAGA	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0203 a0001c0001t0004g0203	1	334	0.0030	29	c.431 others(48): Show c.431+34377_431+34378insTCTTTCTTTTCTTTCTTTCTTTCTTT CTT	WWTR1	ENSG00000018408.15	transcript	ENST00000360632.8	protein_coding	2/6			chr3	TogoVar
WWTR1_chr3_149512235_149663025	149659331	A A	ATTTTTTT others(22): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG02109.hp2 HG02615.hp1 others(1): Show HG01891.hp1 HG02109.hp2 HG02615.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0009 a0001c0001t0016 a0001c0001t0006 a0001c0001t0009 a0001c0001t0016	a0001c0001t0006g0291 a0001c0001t0006g0294 a0001c0001t0009g0328 others(1): Show a0001c0001t0006g0291 a0001c0001t0006g0294 a0001c0001t0009g0328 a0001c0001t0016g0288	4	334	0.0120	29	c.-15 others(40): Show c.-1571_-1570insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	WWTR1	ENSG00000018408.15	transcript	ENST00000360632.8	protein_coding		1307		chr3	TogoVar
XAGE1A_chrX_52490808_52505812	52492351	T T	TCTTCCTC others(22): Show TCTTCCTCTTCTTCCTTCCTTCCTTCCTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18951.hp2 NA18951.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	241	0.0042	29	c.-36 others(40): Show c.-3605_-3604insCTTCCTCTTCTTCCTTCCTTCCTTCCTTC	XAGE1A	ENSG00000204379.11	transcript	ENST00000375602.2	protein_coding		3456		chrX	TogoVar
XAGE1A_chrX_52490808_52505812	52492351	T T	TCTTCTCT others(22): Show TCTTCTCTTCCTTCCTTCCTTCCTTCCTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	241	0.0042	29	c.-36 others(40): Show c.-3605_-3604insCTTCTCTTCCTTCCTTCCTTCCTTCCTTC	XAGE1A	ENSG00000204379.11	transcript	ENST00000375602.2	protein_coding		3456		chrX	TogoVar
XDH_chr2_31329321_31419742	31382219	G G	GAAAATAC others(22): Show GAAAATACAATTCTTCCTGGAAATAGATTT	intron_variant intron_variant	MODIFIER	NA19059.hp1 NA19059.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0126 a0001c0002t0001g0126	1	370	0.0027	29	c.103 others(46): Show c.1039-522_1039-494dupAAATCTATTTCCAGGAAGAATTGTATTT T	XDH	ENSG00000158125.10	transcript	ENST00000379416.4	protein_coding	11/35			chr2	TogoVar
XIAP_chrX_123855053_123918972	123869362	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00673.hp1 HG00408.hp2 HG00673.hp1	a0002 a0002	a0002c0002 a0002c0004 a0002c0002 a0002c0004	a0002c0002t0003 a0002c0004t0019 a0002c0002t0003 a0002c0004t0019	a0002c0002t0003g0220 a0002c0004t0019g0280 a0002c0002t0003g0220 a0002c0004t0019g0280	2	286	0.0070	29	c.-33 others(46): Show c.-33+9091_-33+9092insAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	XIAP	ENSG00000101966.14	transcript	ENST00000371199.8	protein_coding	1/6		INFO_REALIGN_3_PRIME	chrX	TogoVar
XIRP2_chr2_166883480_167264753	167201270	G G	GAAGGAAG others(22): Show GAAGGAAGGAAGGAAAGAACGAAGGAAGGA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG03471.hp1 NA19030.hp2 HG02809.hp2 HG03471.hp1 NA19030.hp2	a0002 a0025 a0031 a0002 a0025 a0031	a0002c0002 a0025c0032 a0031c0043 a0002c0002 a0025c0032 a0031c0043	a0002c0002t0002 a0025c0032t0001 a0031c0043t0011 a0002c0002t0002 a0025c0032t0001 a0031c0043t0011	a0002c0002t0002g0164 a0025c0032t0001g0158 a0031c0043t0011g0061 a0002c0002t0002g0164 a0025c0032t0001g0158 a0031c0043t0011g0061	3	190	0.0158	29	c.563 others(46): Show c.563-9464_563-9463insAGGAAGGAAGGAAAGAACGAAGGAAGGA A	XIRP2	ENSG00000163092.22	transcript	ENST00000409195.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr2	TogoVar
XIRP2_chr2_166883480_167264753	167201270	G G	GAAGGAAG others(22): Show GAAGGAAGGAAGGAAAGAAGGAAGGAAGGA	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0007 a0007	a0007c0008 a0007c0008	a0007c0008t0007 a0007c0008t0007	a0007c0008t0007g0060 a0007c0008t0007g0060	1	190	0.0053	29	c.563 others(46): Show c.563-9464_563-9463insAGGAAGGAAGGAAAGAAGGAAGGAAGGA A	XIRP2	ENSG00000163092.22	transcript	ENST00000409195.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr2	TogoVar
XKR3_chr22_16778480_16830411	16799413	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00642.hp2 HG01099.hp2 others(11): Show HG00099.hp2 HG00642.hp2 HG01099.hp2 HG01257.hp2 HG02056.hp2 HG03491.hp1 HG03492.hp2 HG03688.hp1 NA18971.hp1 NA19056.hp1 NA19059.hp1 NA19060.hp2 NA20300.hp1 NA20805.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0002 a0002c0002t0001 a0002c0002t0002 others(2): Show a0001c0001t0002 a0002c0002t0001 a0002c0002t0002 a0003c0003t0001 a0003c0003t0002	a0001c0001t0002g0012 a0001c0001t0002g0268 a0001c0001t0002g0271 others(9): Show a0001c0001t0002g0012 a0001c0001t0002g0268 a0001c0001t0002g0271 a0001c0001t0002g0293 a0001c0001t0002g0318 a0001c0001t0002g0327 a0001c0001t0002g0350 a0001c0001t0002g0352 a0002c0002t0001g0170 a0002c0002t0002g0294 a0003c0003t0001g0169 a0003c0003t0002g0319	14	418	0.0335	29	c.589 others(44): Show c.589+357_589+358insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	XKR3	ENSG00000172967.8	transcript	ENST00000684488.1	protein_coding	3/3			chr22	TogoVar
XKR4_chr8_55097028_55547054	55247855	C C	CTTTCTTT others(22): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp2 HG00639.hp1 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0054 a0001c0001t0114 a0001c0001t0054 a0001c0001t0114	a0001c0001t0054g0168 a0001c0001t0114g0131 a0001c0001t0054g0168 a0001c0001t0114g0131	2	182	0.0110	29	c.807 others(50): Show c.807-109820_807-109819insCTTTCTTTCTTTCTTTCTTTCTTT CTTTT	XKR4	ENSG00000206579.10	transcript	ENST00000327381.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr8	TogoVar
XKR6_chr8_10891045_11206833	10912653	T T	TGAGTATA others(22): Show TGAGTATATATATGTAAAGAGAGAAAGAGG	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02897.hp2 HG02965.hp2 others(3): Show HG02896.hp1 HG02897.hp2 HG02965.hp2 HG03139.hp2 NA19030.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0017 a0001c0001t0024 others(1): Show a0001c0001t0007 a0001c0001t0017 a0001c0001t0024 a0001c0001t0042	a0001c0001t0007g0109 a0001c0001t0017g0176 a0001c0001t0017g0177 others(3): Show a0001c0001t0007g0109 a0001c0001t0017g0176 a0001c0001t0017g0177 a0001c0001t0017g0178 a0001c0001t0024g0174 a0001c0001t0042g0094	6	178	0.0337	29	c.961 others(48): Show c.961+11980_961+11981insCCTCTTTCTCTCTTTACATATATATA CTC	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	2/2			chr8	TogoVar
XPO6_chr16_28092976_28216965	28186374	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0081 a0001c0001t0001g0081	1	308	0.0033	29	c.4-5 others(42): Show c.4-5344_4-5343insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	XPO6	ENSG00000169180.12	transcript	ENST00000304658.10	protein_coding	1/23			chr16	TogoVar
XPR1_chr1_180627022_180895279	180744650	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0011 a0001c0002t0011	a0001c0002t0011g0085 a0001c0002t0011g0085	1	330	0.0030	29	c.122 others(48): Show c.122-43100_122-43099insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	XPR1	ENSG00000143324.14	transcript	ENST00000367590.9	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
XRCC2_chr7_152639776_152681141	152646301	G G	GTGTGTGT others(22): Show GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0208 a0001c0001t0048g0208	1	394	0.0025	29	c.23 others(40): Show c.2340_*2341insACACACACACACACACACACACACACACA	XRCC2	ENSG00000196584.4	transcript	ENST00000359321.2	protein_coding	3/3	2340		chr7	TogoVar
XRCC4_chr5_83072547_83358760	83217358	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03579.hp2 HG03209.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0009 a0001c0001t0001 a0001c0002t0009	a0001c0001t0001g0002 a0001c0002t0009g0203 a0001c0001t0001g0002 a0001c0002t0009g0203	2	262	0.0076	29	c.745 others(48): Show c.745+12456_745+12457insAAAAAAAAAAAAAAAAAAAAAAAAAA AAA	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC4_chr5_83072547_83358760	83309296	A A	AAAAAAAT others(22): Show AAAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0005 a0005	a0005c0009 a0005c0009	a0005c0009t0001 a0005c0009t0001	a0005c0009t0001g0222 a0005c0009t0001g0222	1	262	0.0038	29	c.894 others(48): Show c.894-43834_894-43833insAAAAATATATATATATATATATATAT ATA	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC4_chr5_83072547_83358760	83309296	A A	AAAAATAT others(22): Show AAAAATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0121 a0001c0001t0002g0121	1	262	0.0038	29	c.894 others(48): Show c.894-43834_894-43833insAAATATATATATATATATATATATAT ATA	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC5_chr2_216104348_216211293	216195345	T T	TTTTCTTT others(22): Show TTTTCTTTTCTTTTCTTTTCTTTTCTTTTC	intron_variant intron_variant	MODIFIER	NA19004.hp2 NA19004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0146 a0001c0001t0001g0146	1	352	0.0028	29	c.210 others(46): Show c.2109+362_2109+363insCTTTTCTTTTCTTTTCTTTTCTTTTCTT T	XRCC5	ENSG00000079246.16	transcript	ENST00000392132.7	protein_coding	19/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
XRCC6_chr22_41616295_41669041	41651361	A A	ATTTTTTT others(22): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19083.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0077 a0001c0001t0002g0077	1	324	0.0031	29	c.112 others(46): Show c.1129+488_1129+516dupTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	XRCC6	ENSG00000196419.13	transcript	ENST00000360079.8	protein_coding	8/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
XRN2_chr20_21298331_21394825	21377264	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19078.hp2 NA19078.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0272 a0001c0001t0002g0272	1	278	0.0036	29	c.258 others(48): Show c.2585-4716_2585-4715insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	XRN2	ENSG00000088930.8	transcript	ENST00000377191.5	protein_coding	27/29		INFO_REALIGN_3_PRIME	chr20	TogoVar
XYLB_chr3_38341785_38419985	38351171	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02004.hp1 NA18964.hp1 HG02004.hp1 NA18964.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0005 a0002c0002t0001 a0002c0002t0005	a0002c0002t0001g0072 a0002c0002t0005g0073 a0002c0002t0001g0072 a0002c0002t0005g0073	2	358	0.0056	29	c.140 others(46): Show c.140+2567_140+2568insAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	XYLB	ENSG00000093217.11	transcript	ENST00000207870.8	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr3	TogoVar
XYLT1_chr16_17096769_17475960	17300542	T T	TGCCTCCT others(22): Show TGCCTCCTGGGTTCAAGTGATTCTCCTGCC	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02723.hp1 HG02723.hp2 others(3): Show HG02647.hp2 HG02723.hp1 HG02723.hp2 HG03453.hp1 NA18522.hp1 NA20300.hp2	a0001 a0003 a0007 others(1): Show a0001 a0003 a0007 a0015	a0001c0004 a0001c0007 a0003c0010 others(3): Show a0001c0004 a0001c0007 a0003c0010 a0003c0034 a0007c0009 a0015c0045	a0001c0004t0089 a0001c0007t0088 a0003c0010t0066 others(3): Show a0001c0004t0089 a0001c0007t0088 a0003c0010t0066 a0003c0034t0063 a0007c0009t0076 a0015c0045t0064	a0001c0004t0089g0141 a0001c0007t0088g0140 a0003c0010t0066g0107 others(3): Show a0001c0004t0089g0141 a0001c0007t0088g0140 a0003c0010t0066g0107 a0003c0034t0063g0108 a0007c0009t0076g0120 a0015c0045t0064g0110	6	156	0.0385	29	c.403 others(48): Show c.403-41073_403-41045dupGGCAGGAGAATCACTTGAACCCAGGA GGC	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding	2/11			chr16	TogoVar
XYLT2_chr17_50341126_50366185	50362955	T T	TTTATTTA others(22): Show TTTATTTATTTATTTTATTTATTTATTTTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00741.hp1 HG02683.hp2 HG00741.hp1 HG02683.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0034 a0002c0002t0001g0001 a0002c0002t0001g0034	2	360	0.0056	29	c.26 others(40): Show c.2664_*2665insTTATTTATTTATTTTATTTATTTATTTTA	XYLT2	ENSG00000015532.10	transcript	ENST00000017003.7	protein_coding		1771		chr17	TogoVar
YAP1_chr11_102105447_102238424	102176745	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03195.hp1 NA19087.hp2 HG03195.hp1 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0259 a0001c0001t0003g0019 a0001c0001t0001g0259 a0001c0001t0003g0019	2	322	0.0062	29	c.689 others(46): Show c.689-9270_689-9242dupAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	YAP1	ENSG00000137693.14	transcript	ENST00000282441.10	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
YAP1_chr11_102105447_102238424	102176745	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAGAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0256 a0001c0001t0001g0256	1	322	0.0031	29	c.689 others(46): Show c.689-9260_689-9259insGAAAAAAAAAAAAAAAAAAAAAAAAAAA A	YAP1	ENSG00000137693.14	transcript	ENST00000282441.10	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
YBEY_chr21_46281342_46302751	46298434	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0066 a0001c0001t0001g0066	1	404	0.0025	29	c.80 others(38): Show c.800_*801insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	YBEY	ENSG00000182362.14	transcript	ENST00000397701.9	protein_coding		684		chr21	TogoVar
YJU2B_chr19_13742895_13768289	13767861	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp1 HG02145.hp1 HG01891.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0141 a0001c0001t0001g0201 a0001c0001t0001g0141 a0001c0001t0001g0201	2	432	0.0046	29	c.47 others(40): Show c.4793_*4794insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	YJU2B	ENSG00000104957.14	transcript	ENST00000221554.13	protein_coding		4573		chr19	TogoVar

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