Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FER1L6_chr8_123846987_124125061	123856240	C C	CATATGTG others(22): Show CATATGTGTATGAGATATATGTATATACAT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0003 a0003	a0003c0013 a0003c0013	a0003c0013t0002 a0003c0013t0002	a0003c0013t0002g0183 a0003c0013t0002g0183	1	196	0.0051	29	c.-8+ others(44): Show c.-8+4057_-8+4058insATGTGTATGAGATATATGTATATACATAT	FER1L6	ENSG00000214814.7	transcript	ENST00000522917.5	protein_coding	1/40		INFO_REALIGN_3_PRIME	chr8	TogoVar
FER1L6_chr8_123846987_124125061	123974659	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02129.hp2 HG02155.hp1 others(5): Show HG01261.hp1 HG02129.hp2 HG02155.hp1 HG02698.hp1 HG02886.hp1 NA18954.hp2 NA18969.hp2 NA19064.hp2	a0001 a0002 a0001 a0002	a0001c0004 a0001c0009 a0001c0014 others(3): Show a0001c0004 a0001c0009 a0001c0014 a0001c0024 a0002c0003 a0002c0010	a0001c0004t0001 a0001c0004t0003 a0001c0009t0001 others(5): Show a0001c0004t0001 a0001c0004t0003 a0001c0009t0001 a0001c0009t0002 a0001c0014t0003 a0001c0024t0002 a0002c0003t0001 a0002c0010t0001	a0001c0004t0001g0118 a0001c0004t0003g0054 a0001c0009t0001g0009 others(5): Show a0001c0004t0001g0118 a0001c0004t0003g0054 a0001c0009t0001g0009 a0001c0009t0002g0127 a0001c0014t0003g0032 a0001c0024t0002g0122 a0002c0003t0001g0187 a0002c0010t0001g0144	8	196	0.0408	29	c.527 others(44): Show c.527-468_527-467insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	FER1L6	ENSG00000214814.7	transcript	ENST00000522917.5	protein_coding	7/40		INFO_REALIGN_3_PRIME	chr8	TogoVar
FERMT2_chr14_52852273_52956050	52902868	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02293.hp2 NA18959.hp1 NA21309.hp1 HG02293.hp2 NA18959.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0001 a0001c0001t0001 a0001c0004t0001	a0001c0001t0001g0017 a0001c0001t0001g0221 a0001c0004t0001g0203 a0001c0001t0001g0017 a0001c0001t0001g0221 a0001c0004t0001g0203	3	288	0.0104	29	c.392 others(46): Show c.392-9442_392-9441insTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	FERMT2	ENSG00000073712.15	transcript	ENST00000341590.8	protein_coding	3/14			chr14	TogoVar
FERMT2_chr14_52852273_52956050	52943208	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0069	1	288	0.0035	29	c.157 others(46): Show c.157+7203_157+7204insTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	FERMT2	ENSG00000073712.15	transcript	ENST00000341590.8	protein_coding	2/14			chr14	TogoVar
FER_chr5_108742897_109201841	108879701	A A	AAAAATAT others(22): Show AAAAATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0038 a0001c0010t0038	a0001c0010t0038g0133 a0001c0010t0038g0133	1	138	0.0073	29	c.924 others(46): Show c.924-3694_924-3693insAAATATATATATATATATATATATATAT A	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	8/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FER_chr5_108742897_109201841	108879701	A A	AAATATAT others(22): Show AAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0082 a0001c0001t0009g0082	1	138	0.0073	29	c.924 others(46): Show c.924-3694_924-3693insATATATATATATATATATATATATATAT A	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	8/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FER_chr5_108742897_109201841	108879701	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0023 a0001c0004t0023	a0001c0004t0023g0083 a0001c0004t0023g0083	1	138	0.0073	29	c.924 others(46): Show c.924-3695_924-3694insTATATATATATATATATATATATATATA T	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	8/19			chr5	TogoVar
FER_chr5_108742897_109201841	108927252	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18952.hp2 NA18952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0029 a0001c0001t0002g0029	1	138	0.0073	29	c.123 others(50): Show c.1237-18859_1237-18858insTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	10/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FEZ1_chr11_125437881_125501265	125449441	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG02132.hp2 HG02647.hp2 HG02132.hp2 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0031 a0001c0001t0003g0324 a0001c0001t0003g0031 a0001c0001t0003g0324	2	356	0.0056	29	c.109 others(46): Show c.1097-875_1097-874insCTTTTTTTTTTTTTTTTTTTTTTTTTTT T	FEZ1	ENSG00000149557.14	transcript	ENST00000278919.8	protein_coding	8/9			chr11	TogoVar
FGD4_chr12_32394558_32651050	32422288	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01070.hp2 HG00099.hp2 HG01070.hp2	a0002 a0002	a0002c0005 a0002c0006 a0002c0005 a0002c0006	a0002c0005t0005 a0002c0006t0007 a0002c0005t0005 a0002c0006t0007	a0002c0005t0005g0069 a0002c0006t0007g0200 a0002c0005t0005g0069 a0002c0006t0007g0200	2	232	0.0086	29	c.166 others(48): Show c.166+22357_166+22358insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD4_chr12_32394558_32651050	32599494	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01192.hp1 NA19004.hp2 HG01192.hp1 NA19004.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0063 a0001c0004t0002 a0001c0004t0063	a0001c0004t0002g0127 a0001c0004t0063g0072 a0001c0004t0002g0127 a0001c0004t0063g0072	2	232	0.0086	29	c.110 others(46): Show c.1101+922_1101+923insAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	5/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD5_chr3_14813962_14939571	14844217	A A	AAAAAAAA others(22): Show AAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0152 a0001c0001t0001g0152	1	342	0.0029	29	c.252 others(50): Show c.2526-19910_2526-19909insAAAAAAATATATATATATATATAT ATATA	FGD5	ENSG00000154783.12	transcript	ENST00000285046.10	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr3	TogoVar
FGD6_chr12_95071749_95222467	95083012	A A	AAAAAAAA others(22): Show AAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01993.hp1 HG02300.hp2 others(1): Show HG01243.hp2 HG01993.hp1 HG02300.hp2 HG04184.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0220 a0002c0002t0003g0261 a0002c0002t0003g0271 others(1): Show a0002c0002t0003g0220 a0002c0002t0003g0261 a0002c0002t0003g0271 a0002c0002t0003g0275	4	384	0.0104	29	c.425 others(48): Show c.4257-1457_4257-1456insATATATATATATATATATATATTTTT TTT	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	20/20			chr12	TogoVar
FGF14_chr13_101705804_101921945	101816269	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG02135.hp1 HG02300.hp2 HG01993.hp2 HG02135.hp1 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0114 a0001c0001t0003 a0001c0001t0004 a0001c0001t0114	a0001c0001t0003g0106 a0001c0001t0004g0057 a0001c0001t0114g0186 a0001c0001t0003g0106 a0001c0001t0004g0057 a0001c0001t0114g0186	3	266	0.0113	29	c.408 others(48): Show c.408+52455_408+52456insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	FGF14	ENSG00000102466.17	transcript	ENST00000376143.5	protein_coding	3/4			chr13	TogoVar
FGF18_chr5_171414647_171462626	171461605	T T	TTTTCTTT others(22): Show TTTTCTTTTCTTTCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	388	0.0026	29	c.48 others(40): Show c.4800_*4801insTTTCTTTTCTTTCTTTCTTTCTTTCTTTC	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		3980		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(22): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0356 a0001c0001t0001g0356	1	388	0.0026	29	c.48 others(40): Show c.4824_*4825insTTTCTTTCTTTCTTTCTTTCTTTCTTCTT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(22): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01074.hp2 HG01099.hp2 HG01243.hp2 others(9): Show HG01074.hp2 HG01099.hp2 HG01243.hp2 HG02165.hp2 HG02572.hp1 HG02976.hp1 NA18954.hp1 NA18979.hp1 NA18984.hp1 NA18989.hp2 NA18991.hp1 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0035 a0001c0001t0001g0096 a0001c0001t0001g0101 others(9): Show a0001c0001t0001g0035 a0001c0001t0001g0096 a0001c0001t0001g0101 a0001c0001t0001g0112 a0001c0001t0001g0116 a0001c0001t0001g0140 a0001c0001t0001g0185 a0001c0001t0001g0198 a0001c0001t0001g0253 a0001c0001t0001g0332 a0001c0001t0001g0353 a0001c0001t0002g0326	12	388	0.0309	29	c.48 others(40): Show c.4824_*4825insTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(22): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18995.hp1 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	388	0.0026	29	c.48 others(40): Show c.4824_*4825insTTTCTTTCTTTCTTTCTTTCTTTCTTTTT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461632	T T	TCTTTCTT others(22): Show TCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0208 a0001c0002t0001g0208	1	388	0.0026	29	c.48 others(40): Show c.4827_*4828insCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4007		chr5	TogoVar
FGF2_chr4_122821831_122903236	122899044	A A	ATTTTTTT others(22): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0142 a0001c0001t0002g0142	1	256	0.0039	29	c.66 others(40): Show c.6648_*6649insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	FGF2	ENSG00000138685.18	transcript	ENST00000644866.2	protein_coding		809		chr4	TogoVar
FGFR2_chr10_121473332_121603444	121548245	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0167 a0001c0002t0005g0167	1	240	0.0042	29	c.624 others(46): Show c.624+3016_624+3044dupAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	5/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577158	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19088.hp2 NA19030.hp2 NA19088.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0006 a0001c0001 a0002c0006	a0001c0001t0001 a0002c0006t0006 a0001c0001t0001 a0002c0006t0006	a0001c0001t0001g0116 a0002c0006t0006g0193 a0001c0001t0001g0116 a0002c0006t0006g0193	2	240	0.0083	29	c.110 others(48): Show c.110-11455_110-11454insATATATATATATATTTTTTTTTTTTT TTT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577158	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02071.hp2 HG00438.hp1 HG02071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0144 a0001c0001t0007g0146 a0001c0001t0007g0144 a0001c0001t0007g0146	2	240	0.0083	29	c.110 others(48): Show c.110-11455_110-11454insATATATATATATATATTTTTTTTTTT TTT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577158	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19070.hp1 NA19070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0143 a0001c0001t0007g0143	1	240	0.0042	29	c.110 others(48): Show c.110-11455_110-11454insATATATATATATATATATTTTTTTTT TTT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGGY_chr1_59292094_59767730	59721337	G G	GTTTTTTT others(22): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02723.hp2 HG01109.hp1 HG02723.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0004 a0002c0004t0002 a0001c0001t0004 a0002c0004t0002	a0001c0001t0004g0003 a0002c0004t0002g0116 a0001c0001t0004g0003 a0002c0004t0002g0116	2	166	0.0121	29	c.151 others(50): Show c.1513-36575_1513-36574insTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHAD1_chr1_15242223_15403328	15389447	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0004 a0002c0003t0004	a0002c0003t0004g0017 a0002c0003t0004g0017	1	294	0.0034	29	c.426 others(48): Show c.4269+1337_4269+1338insAAAAAAAAAAAAAAAAAAAAAAAAAA AAA	FHAD1	ENSG00000142621.21	transcript	ENST00000688493.1	protein_coding	32/33		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHIP1A_chr4_151404176_151675503	151445873	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0008 a0001c0002t0008	a0001c0002t0008g0084 a0001c0002t0008g0084	1	252	0.0040	29	c.-35 others(48): Show c.-355-8828_-355-8827insATATATATATATATATATATATATAT ATA	FHIP1A	ENSG00000164142.16	transcript	ENST00000435205.6	protein_coding	1/13			chr4	TogoVar
FHIP2B_chr8_22084150_22109911	22106419	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0069 a0001c0001t0002g0069	1	394	0.0025	29	c.34 others(40): Show c.3488_*3489insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	FHIP2B	ENSG00000158863.22	transcript	ENST00000289921.8	protein_coding		1509		chr8	TogoVar
FHIT_chr3_59742277_61256452	60130784	G G	GTATATAC others(22): Show GTATATACACACATATATGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	46	0.0217	29	c.104 others(50): Show c.104-116633_104-116632insACACACACACACATATATGTGTGT ATATA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60130784	G G	GTGTGTAT others(22): Show GTGTGTATATACACACATATGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02257.hp2 HG02280.hp2 others(2): Show HG00735.hp2 HG02257.hp2 HG02280.hp2 NA18522.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0010 a0001c0001t0014 others(2): Show a0001c0001t0002 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0001c0002t0001	a0001c0001t0002g0027 a0001c0001t0010g0018 a0001c0001t0014g0017 others(2): Show a0001c0001t0002g0027 a0001c0001t0010g0018 a0001c0001t0014g0017 a0001c0001t0015g0010 a0001c0002t0001g0023	5	46	0.1087	29	c.104 others(50): Show c.104-116633_104-116632insACACACACACATATGTGTGTATAT ACACA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60173918	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0041 a0001c0002t0006g0041	1	46	0.0217	29	c.104 others(50): Show c.104-159767_104-159766insCATATATATATATATATATATATA TATAT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FIS1_chr7_101234472_101250081	101248891	A A	AAAAAAAA others(22): Show AAAAAAAAATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0016 a0001c0002t0001g0016	1	416	0.0024	29	c.-38 others(40): Show c.-3888_-3887insATATATATATATATATATATATTTTTTTT	FIS1	ENSG00000214253.9	transcript	ENST00000223136.5	protein_coding		3811		chr7	TogoVar
FITM2_chr20_44297840_44316202	44315912	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0048 a0001c0001t0021g0048	1	424	0.0024	29	c.-47 others(40): Show c.-4765_-4764insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	FITM2	ENSG00000197296.6	transcript	ENST00000396825.4	protein_coding		4711		chr20	TogoVar
FKBP8_chr19_18526763_18548573	18537488	C C	CAACGGAG others(22): Show CAACGGAGGAGGAGGGAAAAGAGAGAGATA	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0103 a0001c0001t0001g0103	1	390	0.0026	29	c.945 others(44): Show c.945+112_945+113insTATCTCTCTCTTTTCCCTCCTCCTCCGTT	FKBP8	ENSG00000105701.16	transcript	ENST00000608443.6	protein_coding	6/8			chr19	TogoVar
FLACC1_chr2_201283271_201362345	201323784	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0005 a0003c0004t0005	a0003c0004t0005g0312 a0003c0004t0005g0312	1	370	0.0027	29	c.675 others(46): Show c.675+6685_675+6686insTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	FLACC1	ENSG00000155749.13	transcript	ENST00000392257.8	protein_coding	9/14			chr2	TogoVar
FLNA_chrX_154343531_154379634	154361052	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAAAAAAAAAAGAAAT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0103 a0001c0002t0002g0103	1	279	0.0036	29	c.320 others(46): Show c.3207+255_3207+256insATTTCTTTTTTTTTTTTTTTTTTTTTTT T	FLNA	ENSG00000196924.19	transcript	ENST00000369850.10	protein_coding	21/47			chrX	TogoVar
FLNB_chr3_58003422_58177251	58100373	A A	AAAAAAAA others(22): Show AAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0005 a0005	a0005c0011 a0005c0011	a0005c0011t0003 a0005c0011t0003	a0005c0011t0003g0011 a0005c0011t0003g0011	1	180	0.0056	29	c.134 others(48): Show c.1345+1466_1345+1467insAAAAAAATATATATATATATATATAT ATA	FLNB	ENSG00000136068.16	transcript	ENST00000295956.9	protein_coding	8/45		INFO_REALIGN_3_PRIME	chr3	TogoVar
FLNB_chr3_58003422_58177251	58100373	A A	AAATATAT others(22): Show AAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG03579.hp1 HG02559.hp2 HG03579.hp1	a0005 a0010 a0005 a0010	a0005c0010 a0010c0057 a0005c0010 a0010c0057	a0005c0010t0002 a0010c0057t0001 a0005c0010t0002 a0010c0057t0001	a0005c0010t0002g0013 a0010c0057t0001g0046 a0005c0010t0002g0013 a0010c0057t0001g0046	2	180	0.0111	29	c.134 others(48): Show c.1345+1466_1345+1467insATATATATATATATATATATATATAT ATA	FLNB	ENSG00000136068.16	transcript	ENST00000295956.9	protein_coding	8/45		INFO_REALIGN_3_PRIME	chr3	TogoVar
FLNB_chr3_58003422_58177251	58100373	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0004 a0004	a0004c0021 a0004c0021	a0004c0021t0001 a0004c0021t0001	a0004c0021t0001g0121 a0004c0021t0001g0121	1	180	0.0056	29	c.134 others(48): Show c.1345+1465_1345+1466insTATATATATATATATATATATATATA TAT	FLNB	ENSG00000136068.16	transcript	ENST00000295956.9	protein_coding	8/45			chr3	TogoVar
FLRT3_chr20_14317985_14342612	14322173	G G	GTATATAT others(22): Show GTATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0082 a0001c0002t0005g0082	1	430	0.0023	29	c.33 others(40): Show c.3383_*3384insATATATATATATATATATATATATATATA	FLRT3	ENSG00000125848.10	transcript	ENST00000341420.5	protein_coding		811		chr20	TogoVar
FLT1_chr13_28295346_28500128	28412350	C C	CTTTCTTT others(22): Show CTTTCTTTCTTTTCTTTCTTTCTTTTTCTT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0009 a0001c0002t0009	a0001c0002t0009g0072 a0001c0002t0009g0072	1	228	0.0044	29	c.143 others(48): Show c.1437-6457_1437-6456insAAGAAAAAGAAAGAAAGAAAAGAAAG AAA	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	10/29			chr13	TogoVar
FLT1_chr13_28295346_28500128	28412350	C C	CTTTTCTT others(22): Show CTTTTCTTTCTTTCTTTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01109.hp1 HG02683.hp2 others(5): Show HG00140.hp1 HG01109.hp1 HG02683.hp2 HG02735.hp2 HG03453.hp1 HG03704.hp1 NA18939.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0042 a0001c0002t0008 a0001c0003t0001	a0001c0001t0001g0066 a0001c0001t0001g0147 a0001c0001t0001g0174 others(5): Show a0001c0001t0001g0066 a0001c0001t0001g0147 a0001c0001t0001g0174 a0001c0001t0002g0209 a0001c0001t0003g0177 a0001c0001t0042g0102 a0001c0002t0008g0015 a0001c0003t0001g0161	8	228	0.0351	29	c.143 others(48): Show c.1437-6457_1437-6456insAAGAAAGAAAGAAAAAGAAAGAAAGA AAA	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	10/29			chr13	TogoVar
FLT3_chr13_27998274_28105576	27998773	T T	TATGTTAT others(22): Show TATGTTATATTTATATATATTTATATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp2 HG02559.hp1 HG03139.hp1 others(1): Show HG02145.hp2 HG02559.hp1 HG03139.hp1 HG03579.hp1	a0005 a0010 a0011 a0005 a0010 a0011	a0005c0007 a0010c0016 a0011c0039 a0005c0007 a0010c0016 a0011c0039	a0005c0007t0002 a0010c0016t0002 a0011c0039t0001 a0005c0007t0002 a0010c0016t0002 a0011c0039t0001	a0005c0007t0002g0228 a0010c0016t0002g0117 a0010c0016t0002g0174 others(1): Show a0005c0007t0002g0228 a0010c0016t0002g0117 a0010c0016t0002g0174 a0011c0039t0001g0250	4	292	0.0137	29	c.52 others(40): Show c.5278_*5279insTTATATATAAATATATATAAATATAACAT	FLT3	ENSG00000122025.15	transcript	ENST00000241453.12	protein_coding		4500		chr13	TogoVar
FLT4_chr5_180596506_180654600	180635321	C C	CATGGATG others(22): Show CATGGATGGATGGAAGTATGGGGTGGGTGG	intron_variant intron_variant	MODIFIER	NA19074.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0306 a0001c0001t0002g0306	1	388	0.0026	29	c.59- others(44): Show c.59-3544_59-3543insCCACCCACCCCATACTTCCATCCATCCAT	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	1/29			chr5	TogoVar
FMN1_chr15_32760544_33199714	33048644	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAACAAAAACAAAAAC	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0003 a0005c0005t0003	a0005c0005t0003g0188 a0005c0005t0003g0188	1	196	0.0051	29	c.216 others(50): Show c.2161+16312_2161+16313insGTTTTTGTTTTTGTTTTTTTTTTT TTTTT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	6/20			chr15	TogoVar
FMN2_chr1_240086883_240480187	240184928	A A	ACTTTCTC others(22): Show ACTTTCTCCCTCCTACACCTTCCCCCTTCT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0108 a0001c0108	a0001c0108t0001 a0001c0108t0001	a0001c0108t0001g0075 a0001c0108t0001g0075	1	174	0.0058	29	c.193 others(48): Show c.1931-3265_1931-3264insCACCTTCCCCCTTCTCTTTCTCCCTC CTA	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240184928	A A	ACTTTCTC others(22): Show ACTTTCTCCCTCCTATACCTTCCCCCTTCT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02165.hp1 HG03688.hp1 HG01978.hp2 HG02165.hp1 HG03688.hp1	a0007 a0020 a0033 a0007 a0020 a0033	a0007c0121 a0020c0125 a0033c0084 a0007c0121 a0020c0125 a0033c0084	a0007c0121t0003 a0020c0125t0003 a0033c0084t0002 a0007c0121t0003 a0020c0125t0003 a0033c0084t0002	a0007c0121t0003g0121 a0020c0125t0003g0126 a0033c0084t0002g0097 a0007c0121t0003g0121 a0020c0125t0003g0126 a0033c0084t0002g0097	3	174	0.0172	29	c.193 others(48): Show c.1931-3255_1931-3254insCTTCTCTTTCTCCCTCCTATACCTTC CCC	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240184945	C C	CCTTCCCC others(22): Show CCTTCCCCCTTCTCTTTCTCCCTCCTATAA	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG03516.hp2 HG03579.hp1 HG01106.hp2 HG03516.hp2 HG03579.hp1	a0008 a0016 a0072 a0008 a0016 a0072	a0008c0110 a0016c0011 a0072c0056 a0008c0110 a0016c0011 a0072c0056	a0008c0110t0003 a0016c0011t0007 a0072c0056t0001 a0008c0110t0003 a0016c0011t0007 a0072c0056t0001	a0008c0110t0003g0170 a0016c0011t0007g0158 a0072c0056t0001g0144 a0008c0110t0003g0170 a0016c0011t0007g0158 a0072c0056t0001g0144	3	174	0.0172	29	c.193 others(48): Show c.1931-3255_1931-3254insCTTCTCTTTCTCCCTCCTATAACTTC CCC	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240184946	C C	CTTCCCCT others(22): Show CTTCCCCTTGTCTTTCTCCCTCCTATACCT	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0045 a0045	a0045c0124 a0045c0124	a0045c0124t0001 a0045c0124t0001	a0045c0124t0001g0161 a0045c0124t0001g0161	1	174	0.0058	29	c.193 others(48): Show c.1931-3253_1931-3252insGTCTTTCTCCCTCCTATACCTTTCCC CTT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240184948	T T	TCCCCTTC others(22): Show TCCCCTTCTCTTTCTCCCTCCTATACCTTC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG02602.hp1 HG02647.hp1 others(3): Show HG00639.hp1 HG02602.hp1 HG02647.hp1 HG02976.hp2 NA18960.hp2 NA21309.hp2	a0009 a0014 a0046 others(2): Show a0009 a0014 a0046 a0074 a0088	a0009c0004 a0014c0035 a0046c0132 others(2): Show a0009c0004 a0014c0035 a0046c0132 a0074c0058 a0088c0045	a0009c0004t0003 a0014c0035t0001 a0046c0132t0005 others(2): Show a0009c0004t0003 a0014c0035t0001 a0046c0132t0005 a0074c0058t0001 a0088c0045t0001	a0009c0004t0003g0043 a0009c0004t0003g0048 a0014c0035t0001g0044 others(3): Show a0009c0004t0003g0043 a0009c0004t0003g0048 a0014c0035t0001g0044 a0046c0132t0005g0147 a0074c0058t0001g0143 a0088c0045t0001g0005	6	174	0.0345	29	c.193 others(48): Show c.1931-3255_1931-3227dupCTTCTCTTTCTCCCTCCTATACCTTC CCC	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr1	TogoVar

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