Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LOC728392_chr17_5494427_5506006	5497279	T T	TAGGATTA others(22): Show TAGGATTAAGTGTACACTTAATACTTAGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp1 HG00558.hp1 HG00609.hp1 others(35): Show HG00438.hp1 HG00558.hp1 HG00609.hp1 HG02040.hp1 HG02071.hp1 HG02071.hp2 HG02132.hp1 HG02145.hp2 HG02165.hp1 HG02572.hp2 HG02735.hp2 HG02922.hp1 HG03017.hp2 HG04115.hp1 HG04184.hp1 NA18747.hp1 NA18940.hp2 NA18942.hp2 NA18944.hp1 NA18949.hp1 NA18950.hp1 NA18953.hp2 NA18956.hp2 NA18957.hp2 NA18959.hp2 NA18963.hp1 NA18964.hp2 NA18968.hp1 NA18971.hp2 NA18984.hp2 NA18989.hp1 NA18995.hp2 NA18998.hp1 NA19003.hp1 NA19054.hp1 NA19081.hp1 NA19081.hp2 NA21309.hp2	a0003 a0006 a0003 a0006	a0003c0004 a0006c0008 a0003c0004 a0006c0008	a0003c0004t0004 a0003c0004t0009 a0003c0004t0012 others(1): Show a0003c0004t0004 a0003c0004t0009 a0003c0004t0012 a0006c0008t0004	a0003c0004t0004g0003 a0003c0004t0009g0017 a0003c0004t0012g0025 others(1): Show a0003c0004t0004g0003 a0003c0004t0009g0017 a0003c0004t0012g0025 a0006c0008t0004g0019	38	430	0.0884	29	c.32 others(40): Show c.3237_*3238insCACTAAGTATTAAGTGTACACTTAATCCT	LOC728392	ENSG00000286190.2	transcript	ENST00000568641.2	protein_coding		2147		chr17	TogoVar
LOC93622_chr4_6669075_6681047	6678064	G G	GTTTTTTT others(22): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18973.hp1 NA18988.hp1 NA19012.hp1 others(2): Show NA18973.hp1 NA18988.hp1 NA19012.hp1 NA19012.hp2 NA19054.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 a0001c0001t0001 a0001c0001t0004 a0001c0001t0008	a0001c0001t0001g0000 a0001c0001t0004g0000 a0001c0001t0008g0000 a0001c0001t0001g0000 a0001c0001t0004g0000 a0001c0001t0008g0000	5	462	0.0108	29	c.34 others(40): Show c.3492_*3493insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	LOC93622	ENSG00000170846.17	transcript	ENST00000635031.2	protein_coding		2018		chr4	TogoVar
LONP1_chr19_5686834_5725146	5691976	T T	TCAGTTCT others(22): Show TCAGTTCTGGCCCAGACAGGGCCTGACATC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00099.hp2 HG00323.hp1 HG00639.hp1 others(50): Show HG00099.hp2 HG00323.hp1 HG00639.hp1 HG00642.hp2 HG01069.hp1 HG01071.hp1 HG01106.hp1 HG01123.hp1 HG01192.hp1 HG01255.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp2 HG01346.hp2 HG01496.hp2 HG01515.hp2 HG01516.hp1 HG01516.hp2 HG01952.hp2 HG01975.hp2 HG02074.hp1 HG02080.hp1 HG02132.hp2 HG02135.hp2 HG02145.hp1 HG02257.hp1 HG02293.hp2 HG02300.hp2 HG02523.hp1 HG02602.hp1 HG02738.hp2 HG03017.hp1 HG03195.hp1 HG03239.hp2 HG03490.hp1 HG03492.hp2 HG03654.hp1 HG03704.hp1 HG03834.hp2 HG03927.hp2 HG04204.hp2 NA18941.hp1 NA18947.hp2 NA18954.hp2 NA18960.hp1 NA18979.hp2 NA18982.hp1 NA19009.hp2 NA19066.hp1 NA19074.hp1 NA19082.hp2 NA20752.hp2 NA20805.hp1	a0001 a0010 a0022 a0001 a0010 a0022	a0001c0001 a0001c0009 a0010c0016 others(1): Show a0001c0001 a0001c0009 a0010c0016 a0022c0013	a0001c0001t0002 a0001c0001t0004 a0001c0009t0002 others(2): Show a0001c0001t0002 a0001c0001t0004 a0001c0009t0002 a0010c0016t0002 a0022c0013t0002	a0001c0001t0002g0001 a0001c0001t0002g0019 a0001c0001t0002g0020 others(48): Show a0001c0001t0002g0001 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0031 a0001c0001t0002g0035 a0001c0001t0002g0049 a0001c0001t0002g0072 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0002g0079 a0001c0001t0002g0080 a0001c0001t0002g0081 a0001c0001t0002g0083 a0001c0001t0002g0084 a0001c0001t0002g0085 a0001c0001t0002g0086 a0001c0001t0002g0087 a0001c0001t0002g0088 a0001c0001t0002g0089 a0001c0001t0002g0090 a0001c0001t0002g0091 a0001c0001t0002g0092 a0001c0001t0002g0095 a0001c0001t0002g0098 a0001c0001t0002g0099 a0001c0001t0002g0100 a0001c0001t0002g0101 a0001c0001t0002g0102 a0001c0001t0002g0103 a0001c0001t0002g0104 a0001c0001t0002g0108 a0001c0001t0002g0109 a0001c0001t0002g0111 a0001c0001t0002g0112 a0001c0001t0002g0113 a0001c0001t0002g0114 a0001c0001t0002g0115 a0001c0001t0002g0116 a0001c0001t0002g0117 a0001c0001t0002g0208 a0001c0001t0002g0224 a0001c0001t0004g0094 a0001c0009t0002g0068 a0001c0009t0002g0119 a0010c0016t0002g0120 a0022c0013t0002g0013	53	386	0.1373	29	c.27 others(36): Show c.27_*55dupGATGTCAGGCCCTGTCTGGGCCAGAACTG	LONP1	ENSG00000196365.12	transcript	ENST00000360614.8	protein_coding	18/18	55		chr19	TogoVar
LOXHD1_chr18_46472273_46662220	46545627	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0001 a0006c0006t0001	a0006c0006t0001g0151 a0006c0006t0001g0151	1	270	0.0037	29	c.351 others(46): Show c.3515-207_3515-206insAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	LOXHD1	ENSG00000167210.17	transcript	ENST00000642948.1	protein_coding	22/40			chr18	TogoVar
LOXL2_chr8_23291897_23409120	23295150	T T	TGGGCACA others(22): Show TGGGCACAGGGAAAAGCTTGGTCCTTCTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00099.hp2	a0001 a0001	a0001c0020 a0001c0020	a0001c0020t0001 a0001c0020t0001	a0001c0020t0001g0126 a0001c0020t0001g0126	1	348	0.0029	29	c.28 others(40): Show c.2864_*2892dupGAAGAAGGACCAAGCTTTTCCCTGTGCCC	LOXL2	ENSG00000134013.16	transcript	ENST00000389131.8	protein_coding		1746		chr8	TogoVar
LOXL4_chr10_98242690_98273194	98268404	C C	CGGGGGGC others(22): Show CGGGGGGCGGGGGGGAGCGGGGGGGGGGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18940.hp2 NA18940.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0110 a0001c0004t0001g0110	1	438	0.0023	29	c.-30 others(38): Show c.-306_-305insCCCCCCCCCCCCGCTCCCCCCCGCCCCCC	LOXL4	ENSG00000138131.4	transcript	ENST00000260702.4	protein_coding		211		chr10	TogoVar
LPCAT2_chr16_55504072_55591666	55509991	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp1 HG02896.hp2 HG02897.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0036 a0001c0002t0036	a0001c0002t0036g0011 a0001c0002t0036g0011	2	314	0.0064	29	c.171 others(44): Show c.171+656_171+657insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	LPCAT2	ENSG00000087253.13	transcript	ENST00000262134.10	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
LPIN2_chr18_2911999_3018144	2944333	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0086 a0001c0001t0086	a0001c0001t0086g0134 a0001c0001t0086g0134	1	380	0.0026	29	c.591 others(46): Show c.591-3650_591-3622dupAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	LPIN2	ENSG00000101577.11	transcript	ENST00000677752.1	protein_coding	4/19			chr18	TogoVar
LPP_chr3_188149157_188895671	188485796	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0003 a0003	a0003c0009 a0003c0009	a0003c0009t0015 a0003c0009t0015	a0003c0009t0015g0066 a0003c0009t0015g0066	1	76	0.0132	29	c.306 others(46): Show c.306+1110_306+1111insAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188495082	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0005 a0005	a0005c0016 a0005c0016	a0005c0016t0043 a0005c0016t0043	a0005c0016t0043g0058 a0005c0016t0043g0058	1	76	0.0132	29	c.306 others(48): Show c.306+10379_306+10380insATATATATATATATATATATATATAT ATT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188495083	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01256.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0051 a0001c0001t0051	a0001c0001t0051g0019 a0001c0001t0051g0019	1	76	0.0132	29	c.306 others(48): Show c.306+10379_306+10380insATATATATATATATATATATATATAT ATA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	5/11			chr3	TogoVar
LPP_chr3_188149157_188895671	188843786	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0003 a0003	a0003c0009 a0003c0009	a0003c0009t0062 a0003c0009t0062	a0003c0009t0062g0017 a0003c0009t0062g0017	1	76	0.0132	29	c.141 others(50): Show c.1411-22402_1411-22401insAAAAAAAAAAAAAAAAAAAAAAAA AAAAA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRBA_chr4_150259435_151020284	150346757	C C	CCAAAAAA others(22): Show CCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0021	1	180	0.0056	29	c.736 others(48): Show c.7362+3234_7362+3235insTTTTTTTTTTTTTTTTTTTTTTTTTT TTG	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	48/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150592144	G G	GTTTTTTT others(22): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG02074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0043 a0001c0001t0002g0043	1	180	0.0056	29	c.604 others(48): Show c.6047-1286_6047-1285insAAAAAAAAAAAAAAAAAAAAAAAAAA AAA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	38/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150648158	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01167.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0088 a0001c0001t0001g0088	1	180	0.0056	29	c.592 others(50): Show c.5921+35392_5921+35393insTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150694462	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18970.hp1 NA18970.hp1	a0013 a0013	a0013c0027 a0013c0027	a0013c0027t0002 a0013c0027t0002	a0013c0027t0002g0102 a0013c0027t0002g0102	1	180	0.0056	29	c.575 others(50): Show c.5755-10746_5755-10745insTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	36/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150697351	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0003 a0003	a0003c0042 a0003c0042	a0003c0042t0003 a0003c0042t0003	a0003c0042t0003g0180 a0003c0042t0003g0180	1	180	0.0056	29	c.575 others(50): Show c.5755-13635_5755-13634insGTTTTTTTTTTTTTTTTTTTTTTT TTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	36/56			chr4	TogoVar
LRCH1_chr13_46548170_46749898	46558572	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0123 a0001c0002t0002g0123	1	274	0.0037	29	c.307 others(46): Show c.307+4895_307+4896insAAAAAAAAAAAAAAAAAAAAAAAAAAAA A	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46573866	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03669.hp1 HG02818.hp2 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0068 a0001c0001t0006g0171 a0001c0001t0003g0068 a0001c0001t0006g0171	2	274	0.0073	29	c.307 others(48): Show c.307+20164_307+20165insATATATATATATATATATATATATAT TTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46573866	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG03834.hp1 HG01106.hp2 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0017 a0001c0001t0003 a0001c0001t0017	a0001c0001t0003g0078 a0001c0001t0017g0059 a0001c0001t0003g0078 a0001c0001t0017g0059	2	274	0.0073	29	c.307 others(48): Show c.307+20164_307+20165insATATATATATATATATATATATATTT TTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH3_chr3_197786254_197893436	197792577	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01515.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0091 a0001c0001t0007g0091	1	292	0.0034	29	c.262 others(46): Show c.262+1037_262+1038insATATATATATATATATATATATATATAT A	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	1/20			chr3	TogoVar
LRCH3_chr3_197786254_197893436	197792605	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0207 a0001c0001t0034g0207	1	292	0.0034	29	c.262 others(46): Show c.262+1065_262+1066insTATATATATATATATATATATATATATA T	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	1/20			chr3	TogoVar
LRCH3_chr3_197786254_197893436	197817328	A A	ACGTGTGT others(22): Show ACGTGTGTGTGTGTATTTTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG01978.hp1 HG02273.hp1 others(11): Show HG00558.hp2 HG01978.hp1 HG02273.hp1 HG02602.hp1 HG02886.hp2 HG03704.hp2 NA18612.hp1 NA18943.hp2 NA18953.hp2 NA18964.hp1 NA18966.hp2 NA18984.hp2 NA18988.hp1 NA19009.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0007 others(1): Show a0001c0001 a0001c0002 a0001c0007 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 a0001c0001t0033 a0001c0002t0001 a0001c0002t0005 a0001c0002t0010 a0001c0002t0071 a0001c0007t0001 a0002c0003t0055	a0001c0001t0001g0010 a0001c0001t0001g0018 a0001c0001t0002g0020 others(11): Show a0001c0001t0001g0010 a0001c0001t0001g0018 a0001c0001t0002g0020 a0001c0001t0010g0012 a0001c0001t0010g0015 a0001c0001t0033g0019 a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0014 a0001c0002t0005g0016 a0001c0002t0010g0017 a0001c0002t0071g0011 a0001c0007t0001g0005 a0002c0003t0055g0009	14	292	0.0480	29	c.534 others(42): Show c.534+27_534+28insGTGTGTGTGTGTATTTTGTGTGTGTGTGC	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197879599	T T	TTGCGCCA others(22): Show TTGCGCCACTGCACTCCAGCCTGGGCGACA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0037 a0001c0001t0037	a0001c0001t0037g0092 a0001c0001t0037g0092	1	292	0.0034	29	c.220 others(48): Show c.2208+3824_2208+3825insTGCGCCACTGCACTCCAGCCTGGGCG ACA	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	20/20			chr3	TogoVar
LRFN5_chr14_41601876_41909549	41610661	T T	TAAAAAAA others(22): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG02055.hp2 HG03491.hp1 HG01167.hp2 HG02055.hp2 HG03491.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0001 a0001c0002t0002	a0001c0002t0001g0052 a0001c0002t0002g0024 a0001c0002t0002g0051 a0001c0002t0001g0052 a0001c0002t0002g0024 a0001c0002t0002g0051	3	280	0.0107	29	c.-19 others(48): Show c.-197+2121_-197+2122insAAAAAAAAAAAAAAAAAAAAAAAAAA AAA	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41856675	A A	ATTATTAT others(22): Show ATTATTATTATTATTATTATTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA18522.hp2 NA18983.hp1 HG03579.hp2 NA18522.hp2 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0003 a0001c0001t0004 a0001c0002t0003	a0001c0001t0004g0035 a0001c0001t0004g0125 a0001c0002t0003g0255 a0001c0001t0004g0035 a0001c0001t0004g0125 a0001c0002t0003g0255	3	280	0.0107	29	c.-20 others(48): Show c.-20-29929_-20-29928insATTATTATTATTATTATTTTTTTTTT TTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41856675	A A	ATTATTAT others(22): Show ATTATTATTATTATTATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0140 a0001c0001t0009g0140	1	280	0.0036	29	c.-20 others(48): Show c.-20-29929_-20-29928insATTATTATTATTATTTTTTTTTTTTT TTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41856675	A A	ATTATTAT others(22): Show ATTATTATTATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18964.hp1 NA18964.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0149 a0001c0002t0001g0149	1	280	0.0036	29	c.-20 others(48): Show c.-20-29929_-20-29928insATTATTATTTTTTTTTTTTTTTTTTT TTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRIF1_chr1_110942190_110968922	110957470	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02083.hp2 NA18953.hp2 NA18961.hp1 others(1): Show HG02083.hp2 NA18953.hp2 NA18961.hp1 NA18984.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0054 a0001c0001t0004g0181 a0001c0001t0004g0195 others(1): Show a0001c0001t0004g0054 a0001c0001t0004g0181 a0001c0001t0004g0195 a0001c0001t0004g0224	4	446	0.0090	29	c.69- others(44): Show c.69-4656_69-4655insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	LRIF1	ENSG00000121931.16	transcript	ENST00000369763.5	protein_coding	1/3			chr1	TogoVar
LRIT3_chr4_109843107_109877315	109850402	C C	CTTTCTTT others(22): Show CTTTCTTTCTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0009 a0001c0004t0009	a0001c0004t0009g0199 a0001c0004t0009g0199	1	332	0.0030	29	c.117 others(46): Show c.117-1102_117-1101insTTTCTTTCTCTTTCTTTCTTTCTTTCTT T	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCCTT others(22): Show CCTTCCTTCTTCTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0035 a0001c0002t0001g0035	1	332	0.0030	29	c.117 others(46): Show c.117-1079_117-1078insCCTTCTTCTTCTTTCTTTCTTTCTTTCT T	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG02056.hp1 HG02056.hp2 others(9): Show HG00738.hp2 HG02056.hp1 HG02056.hp2 HG03239.hp1 NA18940.hp2 NA18973.hp2 NA19002.hp2 NA19004.hp2 NA19007.hp2 NA19064.hp1 NA19087.hp1 NA19090.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0009 a0002c0002 a0001c0001 a0001c0009 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0009t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0009t0001 a0002c0002t0001	a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0184 others(7): Show a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0002g0182 a0001c0009t0001g0183 a0002c0002t0001g0069	12	334	0.0359	29	c.613 others(46): Show c.613+4011_613+4012insATATATATATATATATATATATATATAT A	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG01928.hp2 HG01934.hp2 HG01928.hp2 HG01934.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0166 a0001c0001t0001g0167 a0001c0001t0001g0166 a0001c0001t0001g0167	2	334	0.0060	29	c.613 others(46): Show c.613+4011_613+4012insAAATATATATATATATATATATATATAT A	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	NA19064.hp2 NA19064.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0065 a0002c0002t0001g0065	1	334	0.0030	29	c.613 others(46): Show c.613+4011_613+4012insAAAAATATATATATATATATATATATAT A	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(22): Show ATATATATATATATATATATATATTTTTTT	intron_variant intron_variant	MODIFIER	NA19003.hp2 NA19003.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0063 a0002c0002t0001g0063	1	334	0.0030	29	c.613 others(46): Show c.613+4011_613+4012insAAAAAAATATATATATATATATATATAT A	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(22): Show ATATATATATATATATATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0234 a0001c0001t0005g0234	1	334	0.0030	29	c.613 others(46): Show c.613+4011_613+4012insAAAAAAAAATATATATATATATATATAT A	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859397	T T	TATATATA others(22): Show TATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00642.hp1 NA19080.hp2 HG00423.hp1 HG00642.hp1 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0001 a0001c0006t0001 a0001c0001t0001 a0001c0006t0001	a0001c0001t0001g0204 a0001c0001t0001g0217 a0001c0006t0001g0205 a0001c0001t0001g0204 a0001c0001t0001g0217 a0001c0006t0001g0205	3	334	0.0090	29	c.613 others(46): Show c.613+4010_613+4011insTATATATATATATATATATATATATATA T	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP12_chr8_104484236_104594258	104547450	T T	TAATATAC others(22): Show TAATATACAATTCTGTTATATTTTGTATAC	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG04184.hp1 HG01081.hp2 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0193 a0001c0001t0001g0195 a0001c0001t0001g0193 a0001c0001t0001g0195	2	318	0.0063	29	c.80- others(46): Show c.80-15488_80-15487insGTATACAAAATATAACAGAATTGTATAT T	LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	1/6			chr8	TogoVar
LRP12_chr8_104484236_104594258	104548353	A A	ATATATTA others(22): Show ATATATTATATATATATATATATAATAAAT	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0035 a0001c0001t0035g0035	1	318	0.0031	29	c.80- others(46): Show c.80-16391_80-16390insATTTATTATATATATATATATATAATAT A	LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	1/6			chr8	TogoVar
LRP1B_chr2_140226423_142136016	141544301	C C	CTTCTTCT others(22): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTT	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0026 a0001c0026	a0001c0026t0001 a0001c0026t0001	a0001c0026t0001g0025 a0001c0026t0001g0025	1	28	0.0357	29	c.206 others(48): Show c.206-63797_206-63769dupAAGAAGAAGAAGAAGAAGAAGAAGAA GAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP2_chr2_169122109_169367534	169326143	T T	TCCCCTCT others(22): Show TCCCCTCTCCCCTCTCCCCTCTCCCCTCTC	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG03704.hp1 HG00738.hp2 HG03704.hp1	a0002 a0002	a0002c0036 a0002c0036	a0002c0036t0001 a0002c0036t0001	a0002c0036t0001g0111 a0002c0036t0001g0118 a0002c0036t0001g0111 a0002c0036t0001g0118	2	250	0.0080	29	c.80- others(44): Show c.80-5260_80-5259insGAGAGGGGAGAGGGGAGAGGGGAGAGGGG	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	1/78			chr2	TogoVar
LRP2_chr2_169122109_169367534	169338404	G G	GAAAGAAA others(22): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	250	0.0040	29	c.80- others(46): Show c.80-17521_80-17520insTCTTTCTTTCTTTCTTTCTTTCTTTCTT T	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	1/78			chr2	TogoVar
LRP2_chr2_169122109_169367534	169360128	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG03130.hp1 HG01884.hp1 HG03130.hp1	a0014 a0014	a0014c0026 a0014c0072 a0014c0026 a0014c0072	a0014c0026t0005 a0014c0072t0004 a0014c0026t0005 a0014c0072t0004	a0014c0026t0005g0010 a0014c0072t0004g0009 a0014c0026t0005g0010 a0014c0072t0004g0009	2	250	0.0080	29	c.79+ others(44): Show c.79+2192_79+2193insTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	1/78			chr2	TogoVar
LRP5_chr11_68307591_68454275	68389156	A A	ATTTACCG others(22): Show ATTTACCGACACCGTTTACCAACACCGACG	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0020 a0001c0020	a0001c0020t0001 a0001c0020t0001	a0001c0020t0001g0164 a0001c0020t0001g0164	1	212	0.0047	29	c.141 others(46): Show c.1413-712_1413-711insTTTACCAACACCGACGTTTACCGACACC G	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	6/22		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRP5_chr11_68307591_68454275	68409073	A A	AAAAAAAA others(22): Show AAAAAAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0118 a0001c0005t0001g0118	1	212	0.0047	29	c.209 others(46): Show c.2092-840_2092-839insAAAAAAAAATATATATATATATATATAT A	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	9/22		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRP5_chr11_68307591_68454275	68409073	A A	AAAAAAAT others(22): Show AAAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0109 a0001c0005t0001g0109	1	212	0.0047	29	c.209 others(46): Show c.2092-840_2092-839insAAAAATATATATATATATATATATATAT A	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	9/22		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC25_chr19_18386137_18402622	18387813	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0132 a0001c0001t0004g0132	1	434	0.0023	29	c.41 others(40): Show c.4173_*4174insAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	LRRC25	ENSG00000175489.10	transcript	ENST00000339007.4	protein_coding		3323		chr19	TogoVar
LRRC27_chr10_132327193_132386508	132352471	C C	CCTCCGTG others(22): Show CCTCCGTGTGGGGCAGGCGCAGGTGCAGCG	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0002 a0001c0009t0002	a0001c0009t0002g0283 a0001c0009t0002g0283	1	290	0.0035	29	c.107 others(46): Show c.1073+737_1073+738insAGGTGCAGCGCTCCGTGTGGGGCAGGCG C	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132352488	C C	CGCAGGTG others(22): Show CGCAGGTGCAGCGCTCCGTGTGGGGCAGAT	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0287 a0001c0001t0021g0287	1	290	0.0035	29	c.107 others(46): Show c.1073+737_1073+738insAGGTGCAGCGCTCCGTGTGGGGCAGATG C	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358789	G G	GAGCGTGG others(22): Show GAGCGTGGGGAGGAGCCGAGGTGGTGGAGC	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0020 a0001c0002t0020	a0001c0002t0020g0213 a0001c0002t0020g0213	1	290	0.0035	29	c.117 others(48): Show c.1171-2666_1171-2665insCGTGGGGAGGAGCCGAGGTGGTGGAG CAG	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar

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